genome.fa.s8.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  128  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35145804--35146205	58	6.9	57	79	7	328	35	24	3	36	1.73
35146164--35146223	28	2.1	28	84	6	77	36	25	8	30	1.85
35146280--35146328	23	2.2	23	82	10	57	24	4	2	69	1.17
35151385--35151422	16	2.4	16	91	4	60	28	7	15	47	1.74
35154043--35154466	59	7.3	59	85	2	547	34	2	28	34	1.71
35154043--35154465	175	2.4	175	85	3	559	34	2	28	34	1.71
35154043--35154466	116	3.6	117	85	2	561	34	2	28	34	1.71
35154038--35154491	29	15.6	28	66	21	167	33	3	28	33	1.74
35154043--35154524	175	2.8	169	78	7	473	34	3	27	34	1.75
35155246--35155277	15	2.1	16	94	5	57	43	18	25	12	1.85
35156324--35156412	6	15.0	6	74	14	78	49	0	4	46	1.22
35156345--35156395	11	4.8	11	76	9	52	50	0	7	41	1.31
35156333--35156412	31	2.5	32	89	8	126	51	0	5	43	1.23
35156339--35156412	17	4.6	17	83	11	102	52	0	5	41	1.24
35160498--35160527	2	15.0	2	100	0	60	50	0	0	50	1.00
35164085--35164173	23	3.8	23	77	4	81	28	11	19	41	1.85
35164138--35164183	23	2.0	23	83	8	58	41	10	17	30	1.84
35166401--35166725	160	2.0	160	92	1	535	24	26	21	27	1.99
35169119--35169171	26	2.0	26	96	0	97	33	20	7	37	1.81
35170701--35170747	21	2.3	20	85	3	58	36	14	0	48	1.44
35172182--35172207	2	13.0	2	100	0	52	50	0	0	50	1.00
35175228--35175448	84	2.6	84	80	6	218	40	11	24	23	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35175223--35175418	41	4.6	41	80	7	169	37	12	25	25	1.90
35175265--35175448	82	2.2	82	81	5	210	41	10	23	23	1.86
35176134--35176177	21	2.1	21	91	8	72	27	13	22	36	1.92
35176141--35176190	21	2.4	21	86	0	73	32	12	26	30	1.92
35179490--35179812	160	2.0	159	95	0	574	26	20	11	42	1.86
35189347--35189384	3	12.7	3	100	0	76	68	0	0	31	0.90
35195400--35195456	29	2.0	29	83	13	73	59	5	3	31	1.36
35195400--35195459	31	2.0	29	87	6	84	60	5	3	31	1.35
35197094--35197169	24	3.2	23	80	16	68	27	1	3	67	1.17
35197130--35197178	6	7.7	6	82	8	53	26	0	0	73	0.83
35197116--35197184	27	2.6	27	77	9	79	26	0	2	71	1.00
35208971--35209021	24	2.1	24	92	0	84	25	21	25	27	1.99
35209003--35209052	25	2.0	26	88	11	77	22	12	30	36	1.90
35209764--35209803	21	1.9	21	94	0	71	27	17	22	32	1.96
35211860--35211954	47	2.0	47	100	0	190	25	21	16	36	1.94
35217887--35218159	130	2.1	128	93	2	467	26	11	18	43	1.84
35218176--35218239	26	2.6	24	76	11	76	67	9	9	14	1.42
35219036--35219092	30	1.9	30	82	7	71	42	5	1	50	1.35
35220887--35221008	42	2.9	42	91	0	208	40	18	12	28	1.87
35221808--35221885	30	2.6	30	83	2	93	39	8	16	34	1.80
35238491--35238536	24	2.0	23	83	12	58	54	2	2	41	1.25
35269741--35269786	23	2.0	25	83	12	62	34	4	4	56	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35270120--35270216	20	4.9	19	72	13	79	27	13	10	48	1.75
35270313--35270342	14	2.1	14	93	0	51	43	0	3	53	1.17
35270659--35270697	18	2.2	18	85	0	51	17	15	10	56	1.66
35270772--35270817	19	2.3	21	88	7	69	23	21	2	52	1.58
35270747--35270850	20	5.3	19	71	15	68	24	18	4	52	1.64
35270714--35270878	40	4.2	40	73	4	138	20	16	7	55	1.65
35270845--35270885	21	2.0	21	85	4	57	17	21	12	48	1.79
35271252--35271317	21	3.2	20	74	20	64	19	12	4	63	1.45
35271376--35271427	22	2.4	21	81	6	59	11	11	11	65	1.48
35271577--35271627	20	2.5	20	84	6	68	25	7	5	60	1.47
35271956--35272002	21	2.3	20	85	3	58	59	6	14	19	1.56
35274654--35274702	17	2.7	18	84	12	64	38	2	2	57	1.22
35274644--35274700	20	3.0	19	72	25	57	38	1	1	57	1.19
35276087--35276147	26	2.4	28	81	13	69	45	1	4	47	1.34
35289365--35289403	17	2.3	17	86	8	53	46	5	0	48	1.24
35299700--35299753	19	2.8	20	78	21	69	55	0	1	42	1.10
35302700--35302745	17	2.6	18	82	6	58	36	2	4	56	1.31
35302695--35302767	16	4.8	16	75	14	73	39	1	6	52	1.37
35303497--35303544	3	16.0	3	80	0	51	60	0	2	37	1.09
35303495--35303549	18	3.0	18	81	10	67	58	0	1	40	1.09
35303500--35303543	15	2.9	15	86	0	61	59	0	2	38	1.10
35304733--35304883	29	5.2	28	68	11	90	34	22	3	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35304715--35304883	58	2.9	58	83	11	211	33	23	2	40	1.70
35306110--35306135	12	2.2	12	100	0	52	26	26	15	30	1.96
35316428--35316848	49	8.6	50	70	14	259	38	18	26	15	1.91
35316419--35316661	98	2.5	98	89	1	362	39	18	25	17	1.92
35316410--35316807	98	4.1	97	82	4	358	39	19	25	16	1.91
35316477--35316786	147	2.1	147	81	7	353	38	18	26	16	1.92
35316622--35316841	99	2.2	98	83	4	264	40	18	26	15	1.90
35316477--35316848	148	2.5	148	79	5	362	38	18	27	16	1.92
35317325--35317380	29	2.0	28	82	10	69	35	1	7	55	1.38
35318129--35318179	3	17.0	3	81	0	57	60	1	1	35	1.19
35319349--35319535	59	3.2	58	83	4	232	29	23	5	41	1.77
35319398--35319501	29	3.6	29	75	16	99	30	22	5	41	1.77
35319349--35319588	59	4.1	58	79	5	225	30	22	5	41	1.76
35322340--35322375	19	1.9	19	88	5	56	47	8	5	38	1.57
35331923--35331957	10	3.5	10	100	0	70	91	0	8	0	0.42
35332065--35332123	20	3.0	20	100	0	118	35	10	10	44	1.72
35337009--35337051	22	2.0	22	85	0	59	67	2	0	30	1.03
35338619--35338953	158	2.1	158	84	4	419	21	23	24	30	1.99
35340244--35340290	24	2.0	23	83	4	58	23	21	17	38	1.93
35341823--35341887	28	2.3	28	75	0	67	29	20	21	29	1.98
35345141--35345183	17	2.5	17	80	0	50	58	4	2	34	1.32
35355615--35355653	17	2.4	16	87	12	53	48	2	12	35	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35359780--35359847	3	24.3	3	74	14	65	69	0	27	2	1.03
35359782--35359844	25	2.5	24	82	7	81	69	0	26	3	1.03
35359783--35359854	22	3.1	22	80	13	67	68	0	27	4	1.08
35359780--35359847	11	6.6	11	73	19	58	69	0	27	2	1.03
35360489--35360531	22	2.0	22	81	4	52	48	2	2	46	1.27
35360530--35360564	11	3.2	11	88	11	54	37	0	0	62	0.95
35361492--35361569	30	2.7	29	78	9	95	51	0	1	47	1.09
35362143--35362171	3	9.7	3	100	0	58	65	0	34	0	0.93
35362680--35362733	25	2.2	25	86	6	74	27	1	3	66	1.19
35364591--35364651	33	1.9	30	83	9	77	29	8	18	44	1.78
35364393--35364682	150	1.9	149	90	2	456	36	11	18	34	1.86
35366824--35366863	20	2.0	20	90	0	62	30	17	17	35	1.93
35366844--35367017	43	4.1	43	92	2	282	20	31	21	25	1.98
35366844--35367017	85	2.1	84	91	3	278	20	31	21	25	1.98
35367086--35367114	15	1.9	15	100	0	58	48	34	3	13	1.60
35367341--35367489	66	2.3	66	92	0	253	17	24	15	42	1.87
35370095--35370161	33	2.1	33	97	2	127	41	8	5	43	1.60
35370183--35370262	8	9.8	8	76	15	67	55	0	1	43	1.08
35370183--35370257	30	2.7	27	85	8	98	54	0	1	44	1.08
35370181--35370262	4	20.0	4	69	14	51	54	0	1	43	1.07
35370213--35370266	26	1.9	29	82	17	62	55	0	0	44	0.99
35370183--35370702	18	28.1	18	65	17	104	48	3	2	45	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35370191--35370405	12	17.6	12	63	18	61	50	2	1	44	1.27
35370336--35370667	94	3.3	94	75	17	294	46	3	3	46	1.36
35370373--35370570	58	3.5	57	74	16	203	46	4	3	45	1.39
35370542--35370702	36	4.6	35	69	16	118	47	2	2	47	1.29
35370573--35371038	113	4.1	113	87	5	622	47	3	3	45	1.35
35370628--35370719	45	2.0	48	83	10	120	51	3	0	45	1.17
35370759--35370803	18	2.4	19	82	14	58	46	0	2	51	1.13
35370872--35370909	18	2.1	18	85	9	51	42	0	5	52	1.24
35370873--35370943	14	5.6	12	76	17	54	43	2	2	50	1.31
35372193--35372225	16	2.1	17	88	11	52	30	6	0	63	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163