genome.fa.s8.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  52  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12920248--12920358	60	1.9	60	84	3	154	49	12	15	22	1.78
12920317--12920376	32	1.9	31	93	3	102	50	10	15	25	1.74
12929603--12929664	32	2.0	32	87	3	90	45	0	6	48	1.28
12935349--12935444	40	2.4	40	87	1	140	32	18	15	33	1.93
12937063--12937122	31	1.9	31	100	0	120	20	10	20	50	1.76
12944912--12944957	19	2.4	20	71	10	51	63	6	8	21	1.46
12945712--12945759	23	2.0	24	88	4	71	35	4	0	60	1.16
12945708--12945766	6	9.5	6	72	20	50	33	3	0	62	1.12
12945671--12945751	29	2.7	30	79	9	94	35	2	0	61	1.09
12945709--12945778	36	1.9	37	82	8	90	35	2	0	61	1.11
12962852--12963025	62	2.8	62	90	1	269	33	22	13	29	1.93
12962974--12963160	52	3.6	52	92	0	320	35	22	14	26	1.94
12967844--12967884	22	1.9	21	95	5	73	58	7	14	19	1.59
12970568--12970608	21	2.0	21	85	9	57	68	0	2	29	1.03
12970891--12970926	15	2.3	15	90	4	54	55	8	0	36	1.30
12976088--12976129	21	2.0	21	100	0	84	38	23	14	23	1.92
12978781--12978840	30	2.0	30	87	6	86	33	5	13	48	1.64
12980153--12980205	26	2.0	26	96	0	97	39	15	11	33	1.83
12982025--12982083	28	2.2	26	84	6	73	32	3	25	38	1.72
12994016--12994120	50	2.1	50	83	0	129	39	18	22	20	1.93
12994200--12994427	40	5.8	40	73	6	169	31	28	17	23	1.96
12994174--12994426	79	3.2	78	81	3	301	32	27	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12995667--12995725	26	2.2	27	87	6	84	30	0	25	44	1.55
12995667--12995725	28	2.2	26	87	6	82	30	0	25	44	1.55
12998376--12998535	45	3.5	45	82	5	196	25	16	15	43	1.86
13004568--13004604	17	2.2	18	85	9	51	29	0	2	67	1.04
13006325--13006371	20	2.3	20	96	0	85	36	12	0	51	1.40
13009413--13009486	33	2.2	33	92	4	123	37	4	0	58	1.17
13010044--13010095	3	17.3	3	100	0	104	67	0	0	32	0.91
13026122--13026164	22	1.9	23	85	4	61	30	9	6	53	1.59
13027192--13027255	29	2.2	29	78	10	69	53	3	7	35	1.46
13032771--13032837	20	3.3	20	82	0	71	41	16	8	32	1.79
13035968--13035998	6	5.2	6	100	0	62	67	0	32	0	0.91
13035997--13036036	6	6.7	6	85	0	53	25	0	42	32	1.55
13035997--13036036	12	3.3	12	89	0	62	25	0	42	32	1.55
13054890--13054943	20	2.7	20	91	0	81	27	35	9	27	1.87
13057389--13057525	28	4.9	28	79	1	159	42	10	23	23	1.85
13057389--13057562	28	6.2	28	75	5	138	44	10	22	22	1.82
13057382--13057578	55	3.6	56	87	3	256	43	10	21	24	1.83
13057387--13057594	111	1.9	111	82	4	267	43	10	22	24	1.83
13058035--13058074	21	1.9	21	85	10	55	30	7	15	47	1.72
13065525--13065575	20	2.6	20	75	9	52	31	0	5	62	1.19
13066900--13066956	30	1.9	30	85	3	80	50	7	5	36	1.52
13069249--13069298	15	3.4	15	72	25	52	36	0	4	60	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13069512--13069547	10	3.5	10	88	7	54	22	0	0	77	0.76
13069642--13069698	27	2.1	27	86	0	78	33	24	31	10	1.89
13069868--13069931	4	15.2	4	75	15	58	64	0	35	0	0.94
13069872--13069931	18	3.5	18	93	6	99	63	0	36	0	0.95
13073161--13073207	21	2.2	20	88	7	67	27	14	34	23	1.94
13074569--13075120	94	5.9	94	93	3	916	46	12	2	38	1.55
13074569--13075120	189	2.9	189	95	1	988	46	12	2	38	1.55
13075092--13075134	21	2.1	21	91	4	70	55	13	2	27	1.51
13075497--13075540	4	11.8	4	88	9	58	2	18	0	79	0.83
13076278--13076316	20	2.0	20	90	10	62	66	0	2	30	1.05
13079819--13079926	6	18.0	6	75	14	89	49	0	1	48	1.18
13079819--13079895	17	4.4	17	76	15	77	44	0	2	53	1.14
13079809--13079895	11	7.5	11	72	18	61	43	0	3	52	1.18
13079846--13079926	31	2.6	30	80	9	83	53	1	1	44	1.16
13079955--13079988	14	2.4	14	95	0	59	35	32	17	14	1.91
13081448--13081760	162	1.9	163	89	2	488	25	16	12	45	1.82
13096703--13097551	68	12.4	68	91	1	1351	34	18	19	27	1.95
13096703--13097551	205	4.1	205	97	0	1567	34	18	19	27	1.95
13097805--13097867	31	2.0	31	87	0	90	46	0	3	50	1.17
13097804--13097866	11	5.8	11	71	16	51	46	0	3	50	1.17
13097790--13097864	17	4.2	17	76	15	62	44	0	4	52	1.20
13097817--13097897	31	2.6	30	80	9	83	53	1	1	44	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13097800--13097897	6	16.0	6	76	12	83	50	1	2	46	1.19
13097934--13097967	14	2.4	14	95	0	59	35	32	17	14	1.91
13099423--13099735	162	1.9	163	88	3	481	25	16	11	46	1.81
13099833--13099933	30	3.4	28	85	6	130	37	22	4	34	1.76
13099907--13100200	59	5.0	59	87	2	419	32	27	4	35	1.76
13099921--13100271	89	4.0	88	70	11	216	31	27	5	35	1.80
13101527--13101592	30	2.2	30	83	0	78	37	3	33	25	1.72
13105323--13105356	18	2.0	18	88	11	54	50	0	20	29	1.49
13107002--13107054	19	2.8	19	75	16	56	30	0	13	56	1.37
13108174--13108214	16	2.6	16	84	11	57	31	0	0	68	0.90
13109641--13109683	19	2.2	21	84	12	56	55	2	0	41	1.12
13109691--13109746	21	2.6	21	77	5	58	66	1	5	26	1.23
13111006--13111076	7	10.1	7	100	0	142	28	57	0	14	1.37
13112429--13112491	31	2.0	31	88	11	94	36	25	17	20	1.94
13116255--13116484	112	2.1	112	89	0	352	20	18	13	46	1.83
13127005--13127129	64	2.0	64	87	3	180	32	5	4	57	1.40
13127971--13128012	20	2.1	20	86	8	59	35	4	11	47	1.61
13130450--13130480	15	2.1	15	94	5	55	0	22	0	77	0.77
13137413--13137550	23	5.9	22	79	13	118	10	24	23	40	1.87
13137413--13137525	46	2.5	45	80	11	140	10	23	24	40	1.86
13141943--13141978	18	2.0	18	94	0	63	11	38	25	25	1.88
13143380--13143416	18	2.1	18	89	0	56	18	32	16	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13144712--13144803	48	1.9	48	82	8	116	20	13	4	61	1.48
13145198--13145230	3	11.0	3	100	0	66	33	0	0	66	0.92
13149133--13149217	44	1.9	44	87	0	125	41	4	5	48	1.48
13149141--13149209	21	3.2	21	70	22	61	42	4	5	47	1.47
13157495--13157544	16	3.1	16	85	2	64	60	4	0	36	1.16
13157496--13157570	9	8.7	9	72	19	61	62	4	1	32	1.22
13157661--13157693	17	1.9	17	93	0	57	51	0	0	48	1.00
13157675--13157749	19	3.9	18	76	13	69	62	1	2	33	1.17
13158650--13158710	23	2.6	23	89	2	86	49	21	22	6	1.72
13159579--13159668	31	2.9	31	82	8	112	52	2	6	38	1.40
13169564--13169599	10	3.7	10	92	7	65	0	19	0	80	0.71
13170065--13170110	21	2.1	22	92	4	76	43	34	0	21	1.53
13170161--13170214	20	2.6	21	85	2	74	14	25	33	25	1.95
13170161--13170208	10	4.7	10	89	2	69	16	29	31	22	1.96
13170215--13170270	13	4.2	13	77	4	58	19	23	17	39	1.92
13171313--13171343	3	10.3	3	100	0	62	32	0	0	67	0.91
13176779--13176815	10	3.7	10	92	0	65	0	18	0	81	0.70
13177284--13177329	21	2.1	22	92	4	76	43	34	0	21	1.53
13177380--13177434	10	5.4	10	84	2	74	18	29	30	21	1.97
13177378--13177434	20	2.8	20	91	2	96	19	29	29	21	1.97
13177444--13177572	13	10.2	13	76	12	135	16	24	21	37	1.93
13177446--13177569	47	2.9	40	82	15	167	16	25	22	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13177444--13177556	27	4.5	27	77	15	134	16	25	22	35	1.95
13177462--13177554	47	2.0	47	95	0	168	16	26	22	34	1.95
13178615--13178645	3	10.3	3	100	0	62	32	0	0	67	0.91
13184081--13184117	10	3.7	10	92	0	65	0	18	0	81	0.70
13184586--13184631	21	2.1	22	92	4	76	43	34	0	21	1.53
13184682--13184736	10	5.4	10	84	2	74	18	29	30	21	1.97
13184680--13184736	20	2.8	20	91	2	96	19	29	29	21	1.97
13184746--13184874	13	10.2	13	76	12	135	16	24	21	37	1.93
13184748--13184871	47	2.9	40	82	15	167	16	25	22	35	1.95
13184746--13184858	27	4.5	27	77	15	134	16	25	22	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163