genome.fa.s8.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  20  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5643618--5644012	30	13.4	29	77	9	248	38	2	25	33	1.70
5643558--5644020	60	7.8	59	78	7	312	38	3	25	33	1.72
5643562--5644012	29	15.2	28	77	7	292	38	3	25	32	1.72
5643735--5644042	30	10.3	30	79	9	258	40	1	23	33	1.65
5644892--5644996	6	18.0	6	71	16	78	51	0	4	42	1.29
5644936--5645000	12	5.5	12	83	9	89	55	0	3	41	1.15
5644935--5644990	11	4.9	11	85	8	76	57	0	3	39	1.16
5644964--5644996	17	1.9	17	93	0	57	57	0	3	39	1.14
5644935--5645000	23	2.8	23	97	2	123	54	0	3	42	1.15
5645503--5645652	39	3.8	39	79	0	156	25	21	30	22	1.99
5645485--5645650	78	2.1	78	85	2	217	25	18	31	24	1.98
5647944--5647970	3	9.0	3	100	0	54	0	33	0	66	0.92
5652052--5652176	17	7.3	17	82	4	153	39	0	4	55	1.27
5652080--5652160	6	14.0	6	72	12	62	38	1	4	55	1.29
5652175--5652211	15	2.6	15	87	8	51	51	13	5	29	1.63
5654031--5654132	32	3.2	32	82	10	138	38	20	3	37	1.71
5654032--5654147	32	3.7	32	79	5	103	39	20	3	36	1.70
5654116--5654219	29	3.6	27	72	21	86	35	25	0	38	1.63
5654142--5654362	29	7.5	30	66	21	105	33	29	0	36	1.64
5654116--5654362	59	4.2	59	86	3	324	33	28	1	36	1.65
5654166--5654362	29	6.7	30	69	17	128	32	30	1	36	1.65
5654144--5654392	59	4.2	57	82	8	261	32	29	2	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5658801--5658847	19	2.5	19	86	3	69	82	6	10	0	0.82
5658801--5658854	24	2.2	24	90	6	83	83	7	9	0	0.82
5659671--5659713	13	3.4	12	83	6	50	79	4	16	0	0.90
5661001--5661143	51	2.8	50	72	15	132	39	18	25	16	1.91
5660989--5661212	101	2.2	101	83	3	272	43	20	22	12	1.86
5661052--5661207	51	3.1	51	72	12	133	43	21	23	11	1.85
5661210--5661529	94	3.4	94	92	4	488	34	11	16	38	1.84
5661493--5662579	92	11.8	92	94	1	1817	33	18	17	30	1.94
5661509--5661651	46	3.1	46	60	15	105	34	17	17	30	1.93
5661456--5662579	370	3.0	369	94	1	1909	33	18	18	30	1.94
5661456--5662579	462	2.4	462	96	0	2040	33	18	18	30	1.94
5662292--5662441	40	3.5	40	68	25	117	33	17	18	30	1.94
5663183--5663307	17	7.3	17	82	4	153	39	0	4	55	1.27
5663211--5663291	6	14.0	6	72	12	62	38	1	4	55	1.29
5663306--5663342	15	2.6	15	87	8	51	51	13	5	29	1.63
5665147--5665257	30	3.6	31	78	10	120	38	21	2	36	1.68
5665147--5665263	32	3.8	32	78	12	118	40	22	2	35	1.68
5665232--5665330	29	3.5	27	74	20	94	35	25	1	38	1.63
5665258--5665361	29	3.5	30	71	21	94	33	28	0	36	1.64
5665232--5665478	59	4.2	59	84	3	306	34	28	1	36	1.67
5665232--5665484	117	2.2	116	83	6	323	33	29	1	35	1.69
5665256--5665455	29	6.8	28	65	21	81	32	31	1	35	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5668065--5668163	39	2.5	40	86	3	146	32	18	19	30	1.95
5673034--5673111	39	2.0	40	89	5	122	34	8	23	33	1.86
5678185--5678219	18	1.9	18	88	0	52	48	8	5	37	1.58
5679489--5679536	24	2.0	24	91	4	78	37	6	2	54	1.38
5679528--5679590	17	3.7	17	72	8	56	34	3	9	52	1.50
5679562--5679616	17	3.4	17	76	16	55	47	1	1	49	1.23
5680346--5680394	3	16.0	3	82	4	62	61	0	2	36	1.08
5680346--5680395	19	2.7	19	84	3	66	62	0	2	36	1.07
5681513--5681822	29	10.7	29	77	9	276	38	25	2	34	1.69
5681603--5681817	115	1.9	113	91	1	349	38	26	1	33	1.67
5681530--5681846	173	1.8	174	82	4	417	36	26	2	34	1.70
5686090--5686148	4	15.2	4	79	10	61	77	0	22	0	0.76
5686079--5686150	21	3.2	21	80	14	90	77	0	22	0	0.76
5686078--5686171	46	2.1	43	88	5	134	77	1	21	0	0.83
5686078--5686171	23	4.2	23	84	8	90	77	1	21	0	0.83
5686986--5687075	13	7.0	12	71	16	56	82	4	10	3	0.93
5687021--5687066	18	2.6	18	92	0	74	84	4	4	6	0.85
5687332--5687536	106	1.9	107	92	1	349	23	21	10	44	1.83
5688064--5688418	51	7.1	50	72	12	248	39	21	26	12	1.89
5688064--5688398	148	2.3	149	81	4	392	38	21	26	13	1.91
5688253--5688454	100	2.0	99	84	8	241	41	20	23	14	1.90
5688865--5690083	205	6.0	206	87	2	1609	35	20	22	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5690465--5690527	17	3.7	17	72	8	56	34	3	9	52	1.50
5690499--5690553	17	3.4	17	76	16	55	47	0	1	50	1.11
5691249--5691297	3	16.0	3	87	4	71	63	0	2	34	1.06
5692432--5692648	29	7.4	29	79	11	185	35	24	3	35	1.74
5692469--5692649	59	3.1	59	88	1	265	35	24	3	35	1.74
5692480--5692649	29	5.8	29	82	8	209	37	25	2	34	1.71
5694523--5694582	14	4.3	14	76	14	52	58	8	0	33	1.28
5697041--5697068	3	9.3	3	100	0	56	67	0	0	32	0.91
5709904--5709983	39	2.0	40	88	7	119	32	17	18	31	1.94
5723922--5724019	49	2.0	49	87	0	142	34	15	7	42	1.74
5727104--5727290	52	3.6	52	86	4	243	27	14	23	34	1.94
5732843--5733063	29	7.7	28	75	10	162	35	26	3	34	1.73
5732841--5733058	58	3.8	58	80	8	205	36	25	3	34	1.72
5732839--5733058	87	2.5	88	78	5	227	35	25	3	35	1.72
5732980--5733076	29	3.4	28	79	9	115	38	31	3	26	1.72
5732984--5733077	28	3.3	28	75	12	102	38	31	3	26	1.72
5734073--5734125	26	2.0	28	85	7	74	41	0	5	52	1.25
5736415--5736450	3	11.7	3	94	5	63	33	2	0	63	1.08
5744607--5744799	49	3.8	49	84	11	260	33	16	7	42	1.76
5744682--5744770	29	3.1	29	75	18	112	37	14	11	37	1.82
5747896--5748082	52	3.6	52	84	4	243	26	15	25	33	1.95
5754475--5754623	52	2.9	52	87	0	199	26	18	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5761043--5761105	24	2.6	24	87	0	90	49	11	14	25	1.76
5762685--5762748	24	2.7	24	85	0	92	53	9	12	25	1.68
5767018--5767880	250	3.4	250	81	5	1076	41	15	9	33	1.79
5771952--5772102	40	3.8	40	83	1	187	35	20	17	26	1.95
5772044--5772119	40	1.9	40	83	0	98	35	21	17	26	1.95
5772192--5772293	51	2.0	51	94	0	177	31	12	15	40	1.85
5775415--5775453	16	2.4	16	95	0	69	38	7	25	28	1.83
5775623--5775734	58	1.9	58	87	7	165	51	1	0	46	1.11
5775727--5775777	24	2.1	24	82	10	59	56	0	5	37	1.23
5784110--5784151	17	2.4	18	80	15	52	52	0	23	23	1.47
5786331--5786365	18	1.9	18	88	0	52	17	14	40	28	1.88
5797574--5797607	6	5.5	6	86	6	50	32	2	0	64	1.08
5803330--5803370	20	2.0	20	100	0	82	24	26	9	39	1.86
5806060--5806126	23	2.9	23	95	0	116	29	29	22	17	1.97
5812556--5812588	5	6.8	5	93	6	59	15	0	0	84	0.61
5812556--5812646	24	3.8	24	68	11	69	19	3	2	74	1.06
5812576--5812623	18	2.8	18	77	22	59	20	4	4	70	1.21
5813589--5813617	12	2.3	13	94	5	51	82	0	17	0	0.66
5813631--5813842	105	2.0	105	96	0	388	16	18	14	50	1.79
5816104--5816155	26	2.0	26	100	0	104	26	11	30	30	1.92
5820741--5820820	33	2.4	34	85	8	103	37	5	18	38	1.73
5826447--5826679	41	5.7	41	84	1	281	33	21	28	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5826458--5826679	81	2.7	82	85	0	302	33	21	28	16	1.95
5829036--5829060	12	2.1	12	100	0	50	16	16	0	68	1.22
5834324--5834447	25	4.7	26	70	14	74	57	3	4	34	1.36
5834342--5834458	29	4.2	29	68	18	77	55	2	5	35	1.38
5834306--5834472	82	2.0	82	96	0	307	55	2	6	35	1.41
5839595--5839631	5	7.6	5	88	11	51	37	0	0	62	0.96
5839592--5839636	15	3.2	14	82	17	58	37	0	0	62	0.96
5841803--5841846	14	2.9	15	80	10	54	4	20	15	59	1.54
5842027--5842056	15	1.9	16	93	6	53	33	6	10	50	1.62
5842677--5842703	3	9.0	3	100	0	54	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163