genome.fa.s8.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  103  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29362192--29362425	60	4.0	57	76	12	197	38	24	2	35	1.68
29362474--29362743	146	1.8	146	84	6	368	31	22	7	38	1.82
29362696--29362757	28	2.2	28	82	5	72	35	27	9	27	1.88
29375454--29375555	11	9.1	11	73	11	66	40	0	3	54	1.25
29375454--29375512	17	3.5	17	88	2	93	40	1	1	55	1.20
29375454--29375555	45	2.3	45	86	6	136	40	0	3	54	1.25
29375437--29375524	34	2.6	32	79	15	97	37	2	5	54	1.37
29375470--29375537	28	2.4	29	85	4	86	38	1	5	54	1.34
29376308--29376338	3	10.7	3	93	6	55	67	0	0	32	0.91
29376308--29376408	9	10.6	10	70	21	51	58	0	4	36	1.20
29377543--29377683	59	2.4	58	80	4	140	36	24	3	35	1.73
29377543--29377714	29	5.9	29	76	7	134	36	26	4	33	1.75
29377737--29378002	146	1.8	145	84	7	360	30	25	8	35	1.86
29382693--29382905	67	3.1	66	67	21	177	44	5	6	44	1.51
29382673--29383355	138	5.0	138	87	3	968	46	5	6	40	1.55
29382760--29382979	71	3.2	69	65	23	163	47	6	6	39	1.56
29382673--29383355	272	2.5	273	87	4	971	46	5	6	40	1.55
29383334--29383481	75	2.0	75	81	10	178	31	12	7	47	1.69
29383684--29383717	18	1.9	17	88	5	50	47	11	32	8	1.71
29386472--29386514	22	2.0	21	86	4	59	48	27	4	18	1.68
29398387--29398430	12	3.8	12	84	3	63	4	36	0	59	1.18
29413522--29413883	180	2.0	180	95	0	652	38	12	23	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29420960--29421059	38	2.7	38	81	10	118	30	11	23	36	1.89
29422071--29422368	159	1.9	159	82	2	384	29	21	23	25	1.99
29423875--29423928	26	2.1	26	89	0	81	33	24	14	27	1.94
29423998--29424125	36	3.5	36	80	5	123	23	17	28	29	1.97
29424030--29424125	37	2.6	36	84	11	115	22	17	31	28	1.97
29441313--29441353	16	2.5	17	88	4	57	58	2	36	2	1.24
29442057--29442122	34	1.9	34	84	6	89	19	19	13	46	1.83
29442065--29442122	17	3.4	17	75	0	53	20	17	13	48	1.81
29442663--29442709	17	2.8	16	84	12	58	78	2	12	6	1.02
29442662--29442707	24	1.9	24	82	8	58	78	2	15	4	1.01
29446077--29446493	138	3.0	137	87	4	590	45	5	8	40	1.57
29451157--29451355	103	1.9	103	90	0	317	29	18	17	35	1.94
29455685--29455711	10	2.7	10	100	0	54	40	7	29	22	1.81
29484173--29484223	21	2.4	21	90	0	75	39	23	13	23	1.91
29484939--29485060	25	4.9	25	75	2	93	34	25	15	24	1.95
29485002--29485068	25	2.7	24	81	4	71	32	23	19	23	1.97
29490436--29490495	7	8.7	7	87	8	52	53	0	36	10	1.35
29490438--29490477	14	2.9	14	96	3	73	45	0	40	15	1.46
29490438--29490477	21	2.0	20	95	5	71	45	0	40	15	1.46
29491892--29491965	16	4.6	16	71	6	60	56	18	8	16	1.64
29497675--29497709	18	1.9	18	88	11	54	22	11	2	62	1.41
29501250--29501327	22	3.6	21	75	13	77	57	14	11	16	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29504549--29504617	29	2.4	30	78	7	79	40	0	4	55	1.20
29506022--29506111	18	5.0	17	69	20	58	40	1	2	56	1.19
29506051--29506103	17	2.9	17	78	18	54	39	1	0	58	1.09
29506022--29506101	37	2.2	35	86	8	108	40	1	1	57	1.15
29510414--29510465	14	3.6	15	79	10	63	38	1	1	57	1.21
29510982--29511024	14	3.0	15	86	10	63	74	13	11	0	1.07
29511160--29511186	2	13.5	2	100	0	54	48	0	0	51	1.00
29512076--29512146	27	2.7	27	82	2	81	26	12	1	59	1.42
29512129--29512190	27	2.2	28	85	8	81	20	11	3	64	1.40
29514979--29515024	24	1.9	24	91	8	76	32	26	13	28	1.93
29515658--29515836	42	4.2	43	87	4	222	29	25	9	35	1.87
29521151--29521189	15	2.7	14	88	7	60	76	0	20	2	0.90
29522393--29522686	98	3.0	99	79	8	314	34	19	20	25	1.96
29522693--29522876	82	2.3	80	84	1	233	35	25	14	24	1.93
29522693--29522859	40	4.1	40	83	3	208	36	25	14	22	1.93
29522891--29523131	93	2.6	94	80	6	285	36	22	12	27	1.91
29522864--29523133	47	5.8	46	80	6	251	37	21	12	28	1.90
29522905--29523176	47	5.8	46	78	5	217	36	23	13	26	1.92
29523402--29523445	22	1.9	23	86	9	63	79	9	0	11	0.93
29523711--29523749	15	2.6	14	88	11	60	76	10	12	0	1.01
29537233--29537287	28	2.0	27	83	13	69	23	10	25	40	1.87
29537247--29537300	28	1.9	28	88	0	81	16	11	27	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29540590--29540703	29	3.9	29	77	2	120	53	15	11	19	1.72
29540582--29540709	29	4.4	29	72	13	109	53	14	11	20	1.71
29540653--29540739	29	3.0	28	81	5	77	50	9	14	25	1.73
29541092--29541129	19	2.0	20	89	5	60	65	0	5	28	1.14
29542219--29542253	3	11.7	3	93	0	61	62	0	2	34	1.10
29543485--29543616	29	4.4	30	80	4	133	50	11	14	24	1.75
29543441--29543616	29	5.8	30	76	6	122	51	9	14	23	1.72
29543469--29543623	60	2.6	59	82	5	195	51	10	14	23	1.73
29544014--29544070	27	2.2	26	90	3	87	38	3	19	38	1.69
29549705--29550054	179	2.0	179	83	2	452	26	15	14	44	1.84
29550039--29550614	219	2.6	217	81	5	610	34	8	12	44	1.73
29550866--29550903	17	2.2	18	85	4	51	50	0	2	47	1.15
29551061--29552661	216	7.4	213	75	9	1128	31	10	12	46	1.75
29551061--29552629	427	3.6	426	76	9	1024	31	10	11	46	1.75
29552498--29552844	181	1.9	183	83	2	457	33	9	13	42	1.78
29552679--29553932	218	5.8	216	77	7	982	32	10	12	44	1.76
29553390--29553929	215	2.5	218	77	7	508	33	9	12	45	1.74
29553940--29556297	219	10.8	217	74	8	1554	30	11	12	45	1.77
29570259--29570304	18	2.6	18	77	19	51	58	0	39	2	1.10
29570262--29570319	27	2.1	28	83	3	73	60	0	36	3	1.14
29575482--29575517	17	2.2	17	90	5	56	55	11	13	19	1.68
29586935--29587007	26	2.8	26	68	4	67	28	9	17	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29600772--29600812	19	2.2	19	90	0	64	70	2	24	2	1.11
29601540--29601586	6	7.5	6	80	17	51	78	0	17	4	0.90
29601540--29601586	13	3.8	12	76	20	51	78	0	17	4	0.90
29602982--29603012	7	4.4	7	100	0	62	41	45	0	12	1.42
29605210--29605251	12	3.5	12	78	12	50	0	33	2	64	1.07
29611313--29611368	18	3.1	18	84	5	69	21	19	28	30	1.98
29616808--29616886	39	2.0	39	92	0	131	43	17	13	25	1.86
29617409--29618293	208	4.1	214	79	6	782	30	10	13	46	1.76
29620648--29621170	217	2.4	218	79	6	576	31	11	11	45	1.76
29620691--29621758	589	1.8	592	80	7	1290	30	10	11	47	1.74
29621287--29622047	217	3.5	214	80	8	748	31	9	11	46	1.73
29623109--29624088	219	4.5	217	79	6	928	29	11	13	45	1.78
29623151--29623951	445	1.8	437	83	6	1058	29	11	13	46	1.77
29624983--29625077	49	2.0	48	91	2	154	30	5	11	52	1.59
29625213--29625579	77	4.8	77	84	1	441	33	11	9	45	1.73
29633817--29633862	15	3.1	15	90	6	67	52	6	15	26	1.67
29644541--29644573	12	2.7	12	95	4	57	57	0	42	0	0.98
29645141--29645193	3	17.7	3	96	0	97	32	32	1	33	1.69
29645205--29645269	3	21.7	3	85	0	85	4	0	24	70	1.06
29645202--29645269	18	3.8	18	88	0	100	5	0	23	70	1.09
29645196--29645272	6	12.8	6	85	0	73	9	0	20	70	1.14
29645639--29646026	150	2.6	149	85	4	498	44	2	10	41	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29645893--29646000	50	2.1	50	84	1	135	46	2	7	43	1.46
29645638--29646060	148	2.8	144	78	11	424	44	2	10	42	1.52
29647029--29647508	240	2.0	239	89	3	741	36	6	15	42	1.72
29650696--29650744	12	4.1	12	81	0	62	22	30	2	44	1.64
29658870--29658906	13	2.8	13	100	0	74	78	0	8	13	0.96
29658843--29658910	10	6.5	10	72	21	59	77	1	10	10	1.05
29659311--29659600	42	6.9	42	81	4	318	22	18	23	35	1.96
29659943--29659987	3	15.0	3	90	0	72	33	4	0	62	1.15
29660547--29660608	32	2.0	32	84	6	83	30	6	11	51	1.63
29660422--29660762	138	2.4	141	79	12	349	42	3	9	44	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163