genome.fa.s8.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  28  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7488093--7488521	117	3.7	117	86	4	589	32	27	3	36	1.73
7494338--7494386	17	2.6	19	78	15	57	55	2	0	42	1.11
7494345--7494386	17	2.3	18	88	12	59	57	2	0	40	1.12
7494395--7494433	20	2.0	20	95	5	71	35	2	5	56	1.35
7505224--7505301	30	2.8	28	88	7	113	29	12	8	48	1.72
7505440--7505598	59	2.7	59	82	1	183	46	15	15	22	1.83
7510881--7511000	59	2.0	59	91	0	195	36	0	25	37	1.62
7510885--7511013	59	2.2	59	88	1	186	37	1	25	34	1.66
7510920--7511012	30	3.1	29	68	10	80	38	1	25	34	1.63
7510884--7511032	59	2.5	59	83	6	160	37	2	24	35	1.70
7512577--7512636	23	2.7	23	76	2	68	60	8	1	30	1.36
7512673--7512730	23	2.5	23	83	10	75	22	18	25	32	1.97
7514157--7514217	17	3.6	17	84	0	77	57	4	3	34	1.36
7514668--7515116	48	9.3	48	69	8	248	16	24	19	39	1.92
7514667--7515118	97	4.7	96	85	2	586	16	24	19	39	1.92
7526652--7526782	60	2.2	58	80	10	140	35	6	24	32	1.82
7526735--7526817	29	2.8	30	70	21	75	36	3	27	32	1.74
7526734--7526987	59	4.4	59	77	9	236	37	3	26	32	1.74
7526710--7527045	58	5.8	57	77	10	240	38	2	25	33	1.71
7526923--7527094	30	5.9	29	73	13	113	40	1	24	33	1.66
7526951--7527116	30	5.6	30	72	14	121	37	1	24	36	1.66
7526941--7527102	58	2.7	58	83	6	191	40	1	22	35	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7528251--7528285	9	3.8	9	85	7	52	40	0	0	60	0.97
7529020--7529093	17	4.4	17	80	0	85	52	4	2	40	1.34
7529020--7529093	34	2.2	33	87	4	103	52	4	2	40	1.34
7534460--7535855	691	2.0	694	87	2	2039	42	12	11	33	1.78
7540523--7540571	15	3.1	15	79	8	53	53	0	0	46	1.00
7541362--7541424	24	2.6	24	89	0	99	23	14	11	50	1.74
7547246--7547275	14	2.1	14	93	0	51	56	0	13	30	1.37
7547569--7547639	32	2.2	32	81	16	85	22	25	18	33	1.96
7551109--7551158	12	4.0	13	82	14	61	62	6	0	32	1.20
7551107--7551158	26	2.0	26	85	10	72	61	5	0	32	1.20
7556872--7556911	21	1.9	21	84	0	53	40	15	0	45	1.46
7558877--7558935	24	2.5	24	85	0	82	47	11	13	27	1.78
7558890--7558939	24	2.1	24	96	0	91	56	10	12	22	1.65
7569264--7569309	23	2.0	23	95	0	83	39	19	13	28	1.89
7569350--7569382	4	8.2	4	100	0	66	51	24	0	24	1.48
7575626--7575660	2	18.0	2	94	5	63	51	0	0	48	1.00
7578885--7579064	92	2.0	92	98	0	351	27	20	17	34	1.95
7580631--7580670	20	2.0	20	100	0	80	25	20	15	40	1.90
7582763--7582805	19	2.3	19	84	8	52	58	4	0	37	1.19
7582751--7582828	31	2.6	31	81	15	85	60	3	0	35	1.15
7583801--7583931	69	1.9	68	87	1	190	20	23	22	33	1.97
7584883--7584933	24	2.1	24	96	0	93	21	11	9	56	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7586870--7586920	24	2.1	24	100	0	102	23	11	7	56	1.61
7588429--7588485	30	1.9	30	85	0	78	43	1	3	50	1.29
7591063--7591119	30	1.9	29	85	3	78	47	12	8	31	1.72
7591063--7591127	29	2.2	30	83	2	78	47	12	7	32	1.69
7610274--7610328	12	4.7	12	79	4	58	70	12	3	12	1.28
7610234--7610294	32	2.0	30	84	12	79	63	21	4	9	1.43
7610316--7610399	17	4.8	16	73	15	60	69	13	7	10	1.37
7610665--7610709	17	2.7	17	86	3	56	42	0	6	51	1.28
7611566--7611595	10	3.0	10	95	0	51	63	0	0	36	0.95
7612643--7612718	30	2.6	29	83	4	89	38	21	2	38	1.67
7612668--7612732	29	2.3	28	86	7	87	35	26	1	36	1.66
7612668--7612725	29	2.0	30	89	3	91	34	27	1	36	1.67
7612677--7612866	29	6.5	30	65	22	84	34	26	2	35	1.71
7612676--7612864	58	3.2	56	75	17	188	34	26	2	35	1.71
7624633--7625001	199	1.9	200	90	2	591	36	20	22	20	1.96
7624838--7625169	172	1.9	171	91	0	538	33	20	24	21	1.97
7626462--7626619	29	5.4	29	71	19	121	29	32	4	32	1.77
7626454--7626653	59	3.4	59	86	4	296	33	30	4	32	1.76
7626455--7626671	117	1.9	117	84	3	294	33	29	4	32	1.77
7628100--7628173	10	7.4	10	77	15	73	59	1	0	39	1.06
7629037--7629086	22	2.3	21	83	10	64	54	4	4	38	1.38
7631010--7631041	16	2.0	16	100	0	64	31	12	18	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7633048--7633087	16	2.6	16	92	4	64	35	10	5	50	1.58
7634778--7635010	120	1.9	121	99	0	459	41	3	9	45	1.53
7635131--7635199	29	2.4	28	75	4	66	56	1	11	30	1.44
7638785--7639103	139	2.3	138	82	4	374	41	12	15	31	1.84
7650115--7650151	18	2.1	18	89	0	56	54	0	21	24	1.45
7656152--7656188	3	12.3	3	100	0	74	32	0	0	67	0.91
7682571--7682621	6	8.5	6	78	8	59	43	1	0	54	1.11
7682556--7682598	17	2.4	18	88	3	61	44	2	2	51	1.27
7684489--7684698	30	7.1	29	67	21	109	33	30	3	32	1.74
7684500--7684840	117	2.9	115	76	8	332	33	29	3	34	1.74
7684500--7684844	58	5.9	58	76	9	283	33	29	3	33	1.74
7693168--7693218	25	2.0	25	88	7	77	68	0	0	31	0.90
7693358--7693407	25	2.0	25	85	11	68	44	0	0	56	0.99
7700599--7700623	6	4.2	6	100	0	50	68	0	0	32	0.90
7705347--7705479	67	2.0	67	100	0	266	36	17	18	28	1.93
7709672--7709732	30	2.0	30	90	0	95	39	13	6	40	1.70
7711175--7711563	97	4.0	96	85	5	482	27	10	21	40	1.86
7711175--7711523	193	1.8	194	86	3	506	28	10	21	39	1.87
7715258--7715332	39	1.9	39	91	0	123	41	14	5	38	1.69
7716797--7716832	15	2.4	14	86	13	54	11	0	58	30	1.33
7716805--7716833	15	1.9	15	100	0	58	10	0	62	27	1.28
7718089--7718137	22	2.2	22	82	10	55	34	10	2	53	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7722879--7722971	46	2.0	46	87	4	134	35	12	12	38	1.82
7727610--7727715	53	2.0	53	96	0	194	47	13	6	33	1.68
7730664--7730693	6	5.0	6	100	0	60	16	0	16	66	1.25
7733897--7734041	23	6.5	22	79	8	109	38	24	24	13	1.90
7734102--7734149	24	1.9	26	84	16	66	31	22	0	45	1.53
7734442--7734467	13	2.0	13	100	0	52	53	15	0	30	1.42
7739730--7739775	24	1.9	24	82	8	58	19	4	6	69	1.28
7740923--7740995	9	8.8	9	70	27	63	54	0	0	45	0.99
7740921--7740963	21	2.0	22	90	4	70	48	0	0	51	1.00
7740924--7740995	27	2.5	29	93	6	121	55	0	0	44	0.99
7740948--7740996	16	3.4	16	73	26	63	61	0	0	38	0.96
7741892--7741945	15	4.2	13	77	17	67	53	0	0	46	1.00
7742275--7742314	11	3.5	11	80	12	53	67	0	2	30	1.04
7745371--7745402	3	10.7	3	100	0	64	34	0	0	65	0.93
7750306--7750358	26	2.0	26	100	0	106	50	11	7	30	1.65
7752914--7752952	20	2.0	20	94	0	69	33	7	28	30	1.85
7756697--7756759	34	1.9	32	81	12	74	44	0	6	49	1.28
7764975--7765017	2	21.5	2	95	0	77	51	2	46	0	1.13
7768029--7768060	2	16.0	2	100	0	64	50	0	0	50	1.00
7768599--7768643	3	15.0	3	100	0	90	66	0	0	33	0.92
7770458--7770515	28	2.0	29	83	9	75	24	0	8	67	1.18
7771899--7771927	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7772880--7772908	9	3.0	10	90	10	51	20	0	0	79	0.74
7773473--7773550	31	2.6	30	79	8	86	41	3	7	47	1.50
7773473--7773543	29	2.4	30	85	4	90	40	4	8	46	1.54
7773470--7773560	29	3.0	30	71	14	78	39	5	6	48	1.52
7779405--7779471	20	3.3	20	72	17	59	52	1	0	46	1.09
7779411--7779452	21	2.0	20	86	4	57	47	2	0	50	1.14
7779418--7779473	28	2.0	28	92	3	94	51	1	0	46	1.11
7780144--7780194	9	5.6	9	76	19	52	43	0	0	56	0.99
7780147--7780186	21	1.9	21	94	0	71	47	0	0	52	1.00
7780144--7780244	29	3.4	29	87	5	150	46	0	0	53	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163