genome.fa.s8.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  129  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35373347--35373446	41	2.4	42	88	1	148	23	28	20	29	1.98
35381676--35381744	26	2.7	26	77	6	77	36	10	17	36	1.84
35385014--35385094	31	2.6	33	81	13	91	29	7	3	59	1.42
35394613--35394737	23	5.5	22	81	4	106	11	22	24	41	1.86
35394616--35394734	45	2.6	46	76	9	120	11	22	25	40	1.88
35395573--35395598	2	13.0	2	100	0	52	50	0	0	50	1.00
35408041--35408080	21	1.9	21	84	0	53	65	2	2	30	1.19
35412024--35412084	17	3.3	19	76	21	67	50	0	1	47	1.10
35421020--35421084	30	2.2	30	88	0	94	56	18	4	20	1.58
35421155--35421201	22	2.2	22	84	3	60	74	8	6	10	1.22
35422332--35422397	32	2.1	32	100	0	132	34	30	16	18	1.93
35423709--35423765	4	13.8	4	78	14	62	78	0	21	0	0.74
35423706--35423749	9	4.8	9	86	11	54	81	0	18	0	0.68
35423712--35423760	13	3.8	13	82	15	66	81	0	18	0	0.69
35423712--35423764	9	6.2	9	82	12	67	81	0	18	0	0.70
35429515--35429543	12	2.3	13	88	11	51	65	0	0	34	0.93
35429572--35429612	4	10.2	4	87	10	57	2	29	0	68	1.03
35429551--35429610	28	2.3	26	85	8	77	3	31	0	65	1.09
35436278--35436322	7	6.4	7	100	0	90	57	28	13	0	1.36
35436606--35436667	30	2.1	30	96	0	115	19	24	19	37	1.94
35440978--35441644	154	4.3	154	78	11	782	48	16	4	30	1.67
35441132--35441726	318	1.9	316	94	0	1046	46	15	5	31	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35449426--35449455	14	2.1	14	100	0	60	20	6	0	73	1.05
35453773--35453816	19	2.3	19	80	7	54	36	0	4	59	1.18
35463209--35463254	23	2.0	23	95	0	83	21	41	13	23	1.88
35483523--35483576	21	2.6	21	87	0	90	48	9	20	22	1.78
35484924--35484997	26	2.8	26	70	11	71	51	14	8	25	1.70
35486280--35486315	16	2.4	16	90	9	58	36	5	0	58	1.22
35492678--35492708	9	3.6	9	91	8	55	90	0	0	9	0.46
35492678--35492707	8	3.6	8	95	4	51	90	0	0	10	0.47
35493101--35493172	7	10.1	7	78	11	67	1	16	0	81	0.75
35493103--35493173	8	8.8	8	83	9	90	1	15	0	83	0.73
35493105--35493173	24	2.8	24	91	4	102	1	15	0	82	0.74
35494088--35494130	22	2.0	22	82	8	54	2	20	2	74	1.04
35498296--35498525	30	7.8	30	74	11	138	40	5	18	35	1.74
35501587--35501626	19	2.2	19	86	4	55	27	12	0	60	1.33
35501669--35501704	3	12.0	3	100	0	72	33	0	0	66	0.92
35502359--35502390	15	2.1	15	100	0	64	37	25	6	31	1.81
35503049--35503076	7	4.0	7	100	0	56	71	0	0	28	0.86
35508004--35508172	38	4.3	41	78	6	122	17	17	27	37	1.93
35515052--35515414	144	2.5	144	81	9	406	35	8	25	30	1.85
35515363--35515765	30	13.8	29	71	14	181	36	3	25	34	1.75
35515368--35515732	29	12.4	30	76	10	287	36	3	24	35	1.74
35515337--35515742	59	6.9	58	73	13	237	35	4	25	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35516853--35516916	3	21.0	3	76	9	58	40	3	0	56	1.15
35516874--35516916	18	2.4	18	96	0	77	34	4	0	60	1.17
35517749--35517782	13	2.6	13	85	0	50	32	8	20	38	1.84
35517817--35517867	6	8.8	6	80	8	61	54	0	1	43	1.11
35517817--35517867	11	4.4	12	78	9	61	54	0	1	43	1.11
35517818--35517895	17	4.6	17	82	4	95	53	1	3	41	1.27
35518707--35518732	3	8.7	3	100	0	52	0	30	0	69	0.89
35519572--35519673	42	2.5	42	88	1	161	22	28	30	18	1.97
35519871--35519966	40	2.4	40	87	3	131	37	16	19	26	1.93
35521322--35521346	13	1.9	13	100	0	50	24	16	12	48	1.79
35521343--35521382	21	2.0	20	85	5	53	27	15	12	45	1.82
35535254--35535299	21	2.3	21	88	7	69	23	13	17	45	1.83
35541337--35541366	12	2.5	12	100	0	60	0	36	0	63	0.95
35553962--35554042	37	2.2	37	88	0	117	22	19	29	28	1.98
35557592--35557686	38	2.5	38	76	8	113	29	14	25	30	1.95
35557709--35557788	37	2.2	37	88	0	115	25	18	30	26	1.98
35562646--35562833	38	4.9	38	86	5	227	17	19	28	34	1.95
35562739--35562867	40	3.2	40	81	5	120	19	20	26	33	1.97
35566562--35566586	11	2.3	11	100	0	50	28	36	0	36	1.58
35581617--35581649	16	2.0	17	88	5	50	30	9	24	36	1.86
35582999--35583024	13	2.0	13	100	0	52	46	7	30	15	1.74
35591997--35592034	19	2.1	18	90	5	58	28	0	0	71	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35591981--35592064	41	2.1	41	84	6	109	35	0	0	64	0.94
35594272--35594379	54	2.0	54	98	0	207	28	22	2	46	1.66
35594275--35594359	27	3.1	27	62	18	68	30	20	2	47	1.63
35594290--35594380	27	3.4	26	66	18	69	24	24	2	49	1.61
35594634--35594673	8	5.0	8	96	0	71	27	0	0	72	0.85
35595234--35595298	30	2.2	30	91	0	103	56	16	4	21	1.58
35598340--35598659	59	5.4	59	82	6	382	34	1	29	34	1.69
35598380--35598666	29	9.8	29	67	23	129	35	2	28	34	1.69
35598526--35598628	31	3.4	29	71	23	88	37	2	25	33	1.71
35600639--35600699	28	2.2	29	79	8	72	57	4	0	37	1.20
35601016--35601857	201	4.2	201	90	2	1223	18	23	21	36	1.95
35601016--35601857	397	2.1	397	88	2	1213	18	23	21	36	1.95
35614087--35614364	59	4.7	58	78	10	271	35	2	28	33	1.69
35614087--35614382	117	2.5	117	83	8	354	35	2	28	34	1.69
35614087--35614372	58	4.9	57	78	12	278	35	2	28	33	1.69
35614213--35614373	30	5.5	29	71	15	143	37	2	26	33	1.70
35617061--35617101	2	20.5	2	100	0	82	51	0	48	0	1.00
35618187--35618230	14	3.0	14	80	6	52	77	2	4	15	1.04
35619893--35619993	38	2.7	38	78	9	125	32	25	19	21	1.97
35621357--35621450	28	3.3	28	87	1	134	46	19	20	13	1.83
35624650--35624690	16	2.6	16	100	0	82	41	17	12	29	1.85
35632610--35632847	26	9.2	26	69	10	105	27	17	27	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35632601--35632748	78	1.9	78	84	8	203	26	16	27	29	1.97
35632605--35632763	52	3.1	52	85	3	178	27	15	28	28	1.96
35638699--35638759	28	2.2	28	85	5	79	27	11	29	31	1.92
35638843--35638903	28	2.1	29	90	3	97	26	13	24	36	1.92
35638716--35638993	146	1.9	146	89	1	432	36	8	24	30	1.86
35639437--35639498	17	3.6	17	69	4	52	53	9	3	33	1.50
35640089--35641365	91	14.0	91	94	1	2137	32	19	16	31	1.94
35642964--35643035	1	72.0	1	71	0	54	0	13	0	86	0.58
35642964--35643027	7	9.6	7	82	14	82	0	14	0	85	0.59
35642964--35643035	19	3.8	18	87	12	92	0	13	0	86	0.58
35642969--35643032	33	1.9	33	93	6	112	0	14	0	85	0.59
35648580--35648830	118	2.1	118	88	1	378	39	6	24	29	1.80
35648696--35648974	146	1.9	146	81	5	343	39	6	24	30	1.79
35650222--35650293	3	23.7	3	80	8	74	38	2	0	58	1.13
35652027--35652333	59	5.2	58	90	5	422	34	4	28	32	1.77
35651984--35652333	117	3.0	116	87	4	463	34	5	28	31	1.80
35652210--35652304	30	3.2	30	63	24	74	33	7	27	31	1.84
35652463--35652798	162	2.1	162	92	2	550	41	13	19	25	1.88
35654376--35654440	17	4.0	17	78	11	73	53	0	4	41	1.21
35654389--35654458	11	6.5	11	74	12	65	55	0	4	40	1.19
35654747--35655494	76	9.8	76	86	6	929	32	17	16	33	1.92
35663541--35663591	24	2.0	27	81	11	63	43	11	23	21	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35667600--35667913	58	5.4	59	91	2	449	33	3	30	32	1.76
35667600--35667913	117	2.7	117	88	4	438	33	3	30	32	1.76
35667627--35667910	30	9.8	29	70	11	161	33	3	30	32	1.75
35667605--35667939	29	11.5	29	69	23	152	34	3	28	33	1.75
35667834--35667972	29	4.8	29	77	13	110	32	4	27	35	1.76
35669705--35669779	36	2.1	35	85	5	96	12	13	28	46	1.78
35669822--35669891	17	4.3	17	73	10	65	58	0	4	37	1.18
35669804--35669850	22	2.1	22	84	0	58	48	0	4	46	1.21
35669832--35669902	31	2.4	29	88	4	106	59	0	2	38	1.12
35669834--35669904	11	6.5	11	72	15	58	59	0	2	38	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163