genome.fa.s8.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  149  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40850326--40850581	59	4.4	57	79	7	176	35	4	29	30	1.78
40850532--40850725	59	3.3	59	92	0	316	35	3	28	32	1.73
40850484--40850726	118	2.1	114	81	10	283	33	4	30	32	1.78
40850292--40850727	206	2.1	205	93	0	737	33	5	30	30	1.79
40852592--40852647	17	3.3	16	80	9	58	50	3	0	46	1.19
40856329--40856376	9	4.9	9	79	18	51	64	4	0	31	1.12
40858351--40858396	24	2.0	24	84	12	62	63	0	0	36	0.95
40858349--40858419	29	2.4	30	88	6	101	61	1	0	36	1.05
40858350--40858415	35	1.9	34	81	9	80	62	1	0	36	1.05
40858570--40858596	2	13.5	2	100	0	54	48	0	0	51	1.00
40859830--40859863	2	17.0	2	87	0	50	44	0	55	0	0.99
40866917--40867110	97	2.0	97	86	6	268	39	13	17	29	1.89
40867344--40867424	30	2.8	27	77	15	81	35	8	25	29	1.86
40867383--40867714	30	11.2	28	76	12	184	37	2	23	36	1.67
40867376--40867672	60	5.0	58	79	7	251	36	2	25	36	1.69
40867407--40867714	60	5.2	59	82	7	286	37	1	24	37	1.67
40867399--40867736	90	3.8	86	80	8	272	36	2	23	36	1.68
40867516--40867733	30	7.3	29	82	6	206	39	1	21	37	1.64
40867546--40867737	90	2.1	90	90	3	298	39	2	21	36	1.65
40868376--40868489	50	2.3	49	80	11	133	28	12	5	54	1.59
40868378--40868489	49	2.3	49	81	9	122	28	12	5	53	1.60
40868714--40868740	3	9.0	3	100	0	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40869418--40869527	17	6.4	17	78	1	103	56	4	2	36	1.34
40869840--40870529	209	3.3	209	85	3	897	22	23	18	36	1.95
40872971--40873019	22	2.5	18	77	22	62	40	4	20	34	1.71
40872979--40873024	22	2.1	22	100	0	92	45	4	17	32	1.68
40873175--40873207	6	5.5	6	92	0	57	48	0	30	21	1.50
40879440--40879474	12	2.9	12	86	0	52	22	31	0	45	1.53
40888109--40888179	29	2.4	29	75	13	74	38	15	22	23	1.93
40888159--40888242	30	2.8	30	75	12	75	36	5	23	33	1.79
40888196--40888597	30	13.5	29	78	7	310	35	1	24	38	1.65
40889362--40889478	49	2.3	49	84	11	141	25	14	5	53	1.63
40889669--40889716	9	5.4	9	90	5	53	25	2	0	72	0.95
40889679--40889716	3	12.7	3	94	0	67	28	0	0	71	0.87
40890243--40890268	13	2.0	13	100	0	52	23	23	30	23	1.99
40907748--40907780	17	1.9	17	100	0	66	18	39	12	30	1.87
40917180--40917229	26	2.0	25	84	4	64	40	18	8	34	1.79
40920674--40920706	2	16.5	2	100	0	66	48	0	0	51	1.00
40930284--40930350	25	2.6	26	75	13	66	58	2	1	37	1.23
40930306--40930363	8	6.7	9	72	21	52	60	3	0	36	1.14
40940301--40940396	30	3.2	29	73	14	77	45	1	5	47	1.32
40944223--40944478	132	1.9	132	85	3	354	33	20	22	23	1.97
40952211--40952293	24	3.5	24	81	0	103	50	7	13	28	1.68
40959161--40959197	18	2.1	18	94	0	65	51	0	24	24	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40959161--40959197	12	3.1	12	84	0	56	51	0	24	24	1.49
40959300--40959398	38	2.5	41	75	11	107	24	16	26	33	1.96
40959325--40959403	37	2.1	38	85	2	106	24	16	24	35	1.95
40965429--40965469	16	2.5	17	80	11	59	68	0	0	31	0.90
40965673--40965697	5	5.0	5	100	0	50	20	20	20	40	1.92
40981208--40981241	17	2.1	16	88	5	50	44	0	0	55	0.99
40982930--40982977	18	2.5	18	83	10	60	25	0	6	68	1.12
40983067--40983113	22	2.0	23	84	15	62	57	2	0	40	1.11
40998283--40998334	3	17.0	3	96	4	95	32	0	0	67	0.91
41000490--41000665	91	1.9	91	100	0	352	37	9	3	49	1.53
41005006--41005044	16	2.4	16	82	0	51	33	15	12	38	1.85
41022677--41022709	6	5.3	6	96	3	57	63	0	18	18	1.31
41023933--41023968	18	2.0	18	94	0	63	52	2	0	44	1.15
41026532--41026568	14	2.4	16	86	8	51	56	0	0	43	0.99
41026753--41026806	26	2.1	26	82	6	65	53	0	3	42	1.18
41028079--41028103	5	5.0	5	100	0	50	40	0	40	20	1.52
41030964--41031470	251	2.0	252	93	1	874	26	13	15	44	1.83
41035698--41035730	16	2.1	16	100	0	66	36	12	12	39	1.80
41038336--41038393	29	2.0	29	82	3	71	34	0	12	53	1.38
41043590--41043703	35	3.2	35	63	18	90	37	14	14	33	1.87
41043567--41043711	72	2.0	72	100	0	290	37	15	15	31	1.89
41045913--41045979	31	2.2	31	86	0	89	44	10	7	37	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41048137--41048334	60	3.4	57	86	8	274	33	4	30	31	1.78
41048181--41048334	30	5.2	29	67	24	106	32	3	29	33	1.76
41049471--41049509	20	1.9	20	89	5	60	33	0	7	58	1.26
41049469--41049517	21	2.3	21	82	6	64	32	2	6	59	1.34
41050181--41050260	17	4.5	17	75	16	72	50	1	0	48	1.08
41058724--41058758	3	11.7	3	88	11	54	0	28	37	34	1.58
41065768--41065814	20	2.3	20	82	13	53	36	10	0	53	1.36
41066354--41066705	30	11.9	30	85	5	362	37	1	24	36	1.65
41066358--41066705	88	3.9	89	80	7	370	37	1	24	35	1.65
41066358--41066705	118	3.0	116	80	9	400	37	1	24	35	1.65
41067676--41067742	25	2.6	25	75	17	66	56	1	2	38	1.24
41068197--41068244	19	2.5	19	79	0	60	56	2	6	35	1.36
41068831--41068987	85	1.8	85	87	0	233	26	21	14	38	1.91
41068666--41069149	209	2.3	208	86	1	682	25	20	15	38	1.92
41068962--41069312	161	2.2	160	83	4	436	26	19	15	37	1.92
41069563--41069675	40	2.8	41	85	4	140	30	18	19	31	1.96
41069563--41069682	41	3.0	41	85	3	154	30	17	20	32	1.95
41069881--41070062	49	3.7	50	72	5	163	15	29	18	37	1.91
41070978--41071025	25	2.0	25	91	4	80	2	16	0	81	0.79
41070976--41071034	12	5.1	12	73	20	54	1	16	0	81	0.78
41070976--41071046	34	2.2	33	87	12	103	2	15	0	81	0.80
41070976--41071034	24	2.5	22	84	10	73	1	16	0	81	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41076540--41077020	30	16.4	30	77	8	343	36	3	26	33	1.74
41077982--41078026	21	2.1	21	84	8	56	60	2	2	35	1.22
41085556--41085686	65	2.0	65	96	0	244	41	16	5	36	1.72
41085725--41085777	27	1.9	28	84	3	72	45	24	1	28	1.64
41092575--41092618	23	1.9	23	86	9	63	63	4	4	27	1.33
41095412--41095526	33	3.5	33	96	0	203	24	26	22	26	2.00
41095503--41095604	27	4.3	21	73	21	69	20	28	18	32	1.96
41095528--41095672	27	5.4	27	88	3	193	20	27	18	33	1.96
41098957--41099128	87	2.0	87	89	4	267	33	13	16	36	1.88
41099645--41099683	20	2.0	20	85	10	53	53	5	0	41	1.23
41102926--41102995	32	2.2	32	82	7	79	17	14	4	64	1.44
41111320--41111383	31	2.1	31	100	0	128	35	3	3	57	1.30
41115802--41115862	28	2.1	29	90	9	97	45	27	13	13	1.80
41158366--41158416	27	2.0	26	85	11	70	25	5	9	58	1.52
41161633--41161669	16	2.2	17	86	13	51	43	8	2	45	1.47
41162048--41162111	28	2.3	27	84	10	83	45	0	4	50	1.22
41166019--41166046	2	14.0	2	100	0	56	50	0	0	50	1.00
41167149--41167240	41	2.2	41	80	3	105	35	2	9	52	1.47
41167264--41167433	59	2.9	59	83	1	207	23	17	12	47	1.81
41168371--41168399	2	14.5	2	100	0	58	51	0	0	48	1.00
41169691--41169785	10	10.0	9	72	14	66	57	2	6	33	1.35
41169650--41169782	20	6.9	18	68	16	63	57	2	6	34	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41169907--41169936	14	2.1	14	93	0	51	60	0	6	33	1.23
41179908--41179989	17	4.5	17	74	15	65	48	1	1	48	1.17
41179960--41179993	12	2.8	12	86	13	52	58	0	0	41	0.98
41180678--41180720	18	2.6	16	92	7	68	58	0	2	39	1.11
41181041--41181097	9	6.4	9	77	6	55	75	0	17	7	1.02
41181043--41181092	25	2.0	26	88	4	75	74	0	18	8	1.06
41181039--41181104	26	2.5	26	80	7	80	74	0	19	6	1.03
41181776--41182034	29	8.9	28	71	18	163	31	30	3	33	1.76
41181777--41182034	58	4.4	59	89	2	378	31	31	3	33	1.76
41181777--41182034	117	2.2	117	88	2	376	31	31	3	33	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163