genome.fa.s8.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  23  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6262288--6262428	60	2.4	60	84	10	191	36	21	2	38	1.69
6262410--6262576	59	2.8	57	80	5	190	31	25	4	38	1.77
6262381--6262608	29	7.7	30	67	19	95	32	25	4	37	1.76
6263148--6263432	157	1.8	157	81	5	360	31	19	15	32	1.93
6268554--6268587	2	17.0	2	100	0	68	50	0	0	50	1.00
6269624--6269676	17	3.1	16	82	12	61	32	0	1	66	1.03
6270239--6270278	19	2.2	18	82	8	53	47	0	0	52	1.00
6273292--6273339	23	2.2	23	88	7	73	77	6	2	14	1.06
6273283--6273340	21	2.8	20	80	10	64	74	5	1	18	1.10
6273283--6273344	10	6.0	10	73	14	54	74	4	1	19	1.09
6273352--6273480	29	4.4	29	72	13	97	61	2	2	34	1.21
6273495--6273569	37	2.0	37	82	10	91	57	6	2	33	1.39
6273324--6273577	9	26.6	9	65	20	72	59	3	2	34	1.29
6280783--6281000	9	22.9	9	68	19	88	59	4	2	33	1.31
6281444--6281484	21	1.9	21	90	5	64	19	7	0	73	1.07
6285465--6285541	40	1.9	40	83	0	100	41	19	22	16	1.90
6289286--6289334	17	2.9	17	75	0	53	42	14	8	34	1.75
6290054--6290095	11	3.9	10	85	11	57	40	0	2	57	1.12
6292024--6292121	30	3.3	30	77	11	110	32	31	5	30	1.79
6291989--6292129	60	2.4	58	82	3	167	31	28	4	34	1.79
6292036--6292135	30	3.3	30	78	10	105	27	35	6	32	1.81
6293726--6293803	35	2.2	35	82	8	88	41	16	3	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6296511--6296544	10	3.3	10	88	8	50	26	2	0	70	1.01
6298244--6298294	26	2.0	26	84	7	68	35	11	11	41	1.78
6299120--6299167	24	2.0	24	91	0	78	41	16	29	12	1.85
6308912--6308968	6	9.5	6	84	0	60	45	0	29	24	1.53
6308924--6308968	18	2.5	18	100	0	90	44	0	28	26	1.55
6314125--6314165	19	2.2	19	100	0	82	43	4	9	41	1.59
6317683--6317708	6	4.3	6	100	0	52	15	0	0	84	0.62
6317700--6317750	22	2.3	21	81	15	59	17	3	1	76	1.03
6317682--6317746	29	2.2	28	81	10	69	18	3	1	76	0.99
6317688--6317750	13	5.2	12	76	17	60	17	3	1	77	0.97
6318076--6318123	21	2.1	25	81	14	59	22	4	16	56	1.58
6318490--6318683	104	1.9	105	83	5	259	36	12	26	25	1.91
6318528--6318721	104	1.9	104	84	4	266	35	13	25	25	1.92
6319282--6319326	19	2.4	19	81	7	56	37	0	4	57	1.19
6320138--6320184	21	2.2	22	88	3	69	21	8	0	70	1.14
6328893--6328917	11	2.3	11	100	0	50	28	0	0	72	0.86
6329762--6329827	33	2.0	33	96	0	123	37	3	15	43	1.62
6330112--6330285	30	5.8	30	84	4	199	43	17	1	37	1.59
6330117--6330286	61	2.8	60	86	4	216	44	17	1	35	1.59
6341978--6342204	50	4.5	50	85	2	294	38	20	21	19	1.93
6341991--6342204	100	2.1	100	93	1	367	39	21	21	18	1.93
6341978--6342237	50	5.2	50	81	4	256	37	21	21	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6342278--6342549	40	6.9	41	81	8	305	31	24	18	25	1.97
6342259--6342549	39	7.3	40	81	8	292	31	24	17	26	1.97
6342285--6342549	119	2.2	119	85	2	354	32	24	17	25	1.97
6342552--6342674	50	2.5	50	81	7	160	44	16	17	21	1.86
6343920--6343975	22	2.6	22	80	2	60	42	0	16	41	1.48
6344265--6344415	30	5.0	30	82	3	178	43	18	3	35	1.67
6344482--6344523	21	1.9	23	90	9	70	23	0	7	69	1.13
6345451--6345710	96	2.6	97	91	7	396	35	19	18	27	1.95
6351374--6351417	22	2.0	22	95	0	79	27	6	0	65	1.17
6351411--6351441	2	15.5	2	100	0	62	48	0	0	51	1.00
6351367--6351423	28	2.0	28	83	6	71	28	5	0	66	1.13
6351441--6351508	33	2.1	33	94	0	118	26	5	4	63	1.36
6351494--6351534	20	2.0	21	90	4	66	34	2	2	60	1.23
6351969--6352028	9	6.3	9	77	12	50	65	3	0	31	1.09
6351983--6352035	20	2.7	18	81	16	61	71	3	0	24	1.02
6352877--6352917	3	13.7	3	100	0	82	34	0	0	65	0.93
6354054--6354089	19	1.9	18	88	5	54	58	2	0	38	1.13
6355761--6355855	27	3.4	27	88	4	127	37	9	34	17	1.83
6357981--6358024	23	1.9	23	100	0	88	47	9	2	40	1.48
6357986--6358035	23	2.2	23	85	0	64	50	8	2	40	1.43
6359208--6359597	61	6.5	60	78	10	399	29	19	16	34	1.94
6359557--6359637	42	2.0	41	90	4	128	29	11	16	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6363373--6363399	12	2.2	12	100	0	54	59	0	0	40	0.98
6363640--6363781	45	3.4	45	65	25	128	35	4	5	53	1.46
6363761--6363819	30	2.0	29	83	3	73	38	1	0	59	1.08
6363554--6363997	81	5.3	83	86	7	557	37	5	4	52	1.46
6364157--6364191	10	3.5	10	84	0	52	17	40	25	17	1.90
6366435--6366526	30	3.1	30	84	3	96	27	6	4	61	1.39
6367486--6367608	58	2.1	58	86	8	171	32	13	18	34	1.90
6367486--6367608	59	2.1	58	88	5	178	32	13	18	34	1.90
6371267--6371411	37	3.9	37	87	3	220	37	30	21	10	1.87
6371382--6371414	16	2.0	17	88	5	50	33	24	24	18	1.97
6372202--6372351	23	6.4	23	79	11	119	40	22	24	12	1.89
6381271--6381298	13	2.2	13	100	0	56	14	35	0	50	1.43
6382880--6382944	15	4.2	15	74	14	60	64	3	4	27	1.28
6386643--6386688	18	2.4	19	82	7	58	78	0	15	6	0.95
6387288--6387323	18	2.1	18	94	5	65	33	8	0	58	1.28
6390308--6390405	48	2.0	48	100	0	196	39	4	25	30	1.74
6396319--6396344	2	13.0	2	100	0	52	50	0	0	50	1.00
6404267--6404324	28	2.1	27	83	3	71	39	3	3	53	1.35
6418574--6418671	7	14.6	7	72	8	78	35	24	22	17	1.95
6418587--6418671	20	4.2	20	80	3	98	35	24	22	17	1.95
6418573--6418680	13	8.8	13	74	17	97	35	24	23	17	1.95
6418573--6418680	27	4.4	26	71	19	97	35	24	23	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6418733--6418767	15	2.4	15	90	4	54	14	5	31	48	1.67
6418742--6418788	20	2.3	20	88	0	76	14	2	34	48	1.56
6418764--6418793	15	2.0	15	93	0	51	23	0	33	43	1.54
6425659--6425766	13	8.8	13	72	17	88	36	23	22	18	1.95
6425660--6425758	7	14.7	7	72	8	71	36	23	22	18	1.95
6425673--6425758	20	4.2	20	80	2	100	36	23	22	18	1.95
6425659--6425766	27	4.4	26	69	19	88	36	23	22	18	1.95
6425819--6425853	15	2.4	15	90	4	54	14	5	31	48	1.67
6425828--6425874	20	2.3	20	88	0	76	14	2	34	48	1.56
6425850--6425879	15	2.0	15	93	0	51	23	0	33	43	1.54
6431808--6431841	15	2.2	16	89	5	52	67	0	0	32	0.91
6432495--6432624	28	4.4	31	75	15	132	24	20	12	43	1.86
6432809--6432954	58	2.5	60	81	8	169	49	13	13	23	1.77
6433779--6433836	22	2.6	22	76	15	66	41	3	3	51	1.35
6436037--6436076	21	1.9	21	94	0	71	47	0	2	50	1.14
6437624--6437691	23	3.2	23	62	30	60	44	14	19	22	1.86
6445694--6445752	6	9.8	6	73	14	50	38	5	1	54	1.33
6445710--6445736	14	1.9	14	100	0	54	37	11	0	51	1.37
6445789--6445833	14	3.2	14	83	0	63	46	17	6	28	1.73
6446180--6446227	23	2.0	23	84	4	60	52	20	12	14	1.74
6446586--6446621	18	1.9	18	88	5	54	52	0	0	47	1.00
6446967--6447001	17	2.1	17	94	0	61	11	22	25	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6447657--6447682	10	2.6	10	100	0	52	19	7	15	57	1.62
6447604--6447787	75	2.5	75	99	0	359	33	15	9	42	1.78
6447732--6447757	10	2.6	10	100	0	52	19	7	15	57	1.62
6447837--6448206	118	3.1	117	88	3	530	32	26	3	37	1.73
6448014--6448175	29	5.5	28	67	16	87	32	29	2	36	1.71
6447927--6448198	30	9.2	29	66	22	111	32	26	3	36	1.74
6447837--6448211	59	6.4	59	84	3	459	32	26	3	37	1.74
6460167--6460798	92	6.9	92	92	2	1015	36	20	16	26	1.94
6460167--6460798	276	2.3	275	95	0	1129	36	20	16	26	1.94
6461006--6461064	6	9.8	6	73	14	50	38	5	1	54	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163