genome.fa.s8.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  84  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23333057--23333118	10	6.0	10	72	12	54	4	19	0	75	0.97
23333062--23333118	21	2.7	22	78	13	66	5	19	0	75	0.99
23341143--23341194	24	2.2	24	92	0	86	5	19	5	69	1.30
23344740--23344766	14	1.9	14	100	0	54	70	0	14	14	1.17
23347678--23347720	22	1.9	23	85	4	61	51	4	6	37	1.50
23354561--23354607	21	2.2	21	84	0	58	53	23	8	14	1.69
23360381--23360419	18	2.2	18	100	0	78	23	38	20	17	1.93
23361184--23361255	17	4.2	17	78	0	72	22	20	11	45	1.82
23367761--23367807	21	2.2	21	84	0	58	55	10	31	2	1.46
23377376--23377417	12	3.5	12	81	12	59	4	16	2	76	1.07
23377368--23377423	24	2.3	24	96	0	103	3	19	5	71	1.21
23379012--23379049	19	2.0	19	90	10	60	7	13	5	73	1.22
23383941--23383983	22	1.9	23	85	4	61	48	6	6	37	1.57
23397386--23397440	17	3.2	17	81	0	74	23	16	10	49	1.77
23406028--23406070	22	1.9	23	85	4	61	48	6	6	37	1.57
23409808--23410347	271	2.0	271	94	0	936	29	13	23	33	1.93
23418879--23418903	9	2.8	9	100	0	50	40	0	0	60	0.97
23423522--23423591	20	3.5	20	74	18	65	31	12	27	28	1.93
23426042--23426085	23	1.9	22	86	9	61	2	20	0	77	0.88
23431765--23431805	19	2.2	19	100	0	82	24	4	19	51	1.66
23438672--23438714	19	2.3	19	79	0	50	69	4	4	20	1.25
23440306--23440402	26	3.7	26	85	0	122	19	14	25	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23441375--23441431	21	2.7	21	83	0	78	24	17	40	17	1.91
23441375--23441442	21	3.2	21	81	4	66	25	20	38	16	1.92
23449101--23449138	20	1.9	20	88	0	58	21	23	2	52	1.59
23449369--23449405	14	2.7	14	91	4	58	37	5	0	56	1.22
23449398--23449447	20	2.5	20	84	9	59	36	0	2	62	1.07
23449362--23449491	22	6.0	22	71	21	89	37	1	1	59	1.16
23449480--23449556	39	2.0	39	92	0	127	22	9	1	67	1.26
23449364--23449553	19	9.7	19	66	19	72	32	4	1	61	1.24
23460620--23460650	13	2.4	13	100	0	62	38	6	19	35	1.77
23462107--23462179	32	2.2	33	90	4	112	35	8	28	27	1.86
23463305--23463340	17	2.1	17	94	0	63	27	13	27	30	1.94
23469166--23469372	104	2.0	104	90	1	326	28	10	22	37	1.88
23469341--23469370	15	2.0	15	100	0	60	40	0	26	33	1.57
23476274--23476305	16	1.9	17	93	6	57	46	0	12	40	1.42
23478317--23478354	18	2.2	18	86	9	53	31	0	18	50	1.47
23478324--23478361	17	2.2	17	90	9	60	34	0	13	52	1.40
23480145--23480208	30	2.1	30	91	0	101	40	23	0	35	1.55
23481028--23481057	3	10.0	3	100	0	60	33	0	0	66	0.92
23483299--23483328	2	15.5	2	93	6	53	50	0	0	50	1.00
23484160--23484184	13	1.9	13	100	0	50	16	16	0	68	1.22
23484169--23484285	56	2.1	57	87	9	168	26	18	6	47	1.73
23485876--23486178	110	2.8	110	84	0	408	33	16	20	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23486662--23486761	29	3.4	29	78	10	114	52	10	18	20	1.73
23486661--23486774	58	1.9	59	87	1	167	51	8	18	21	1.72
23486659--23486781	29	4.3	29	75	10	92	51	8	17	22	1.72
23487235--23487305	33	2.2	33	85	7	101	38	2	16	42	1.63
23487432--23487464	14	2.4	14	94	0	57	33	21	12	33	1.90
23497371--23497413	17	2.5	17	80	0	50	55	13	11	18	1.68
23497514--23497558	21	2.1	21	84	8	56	2	26	4	66	1.22
23503414--23503448	18	1.9	18	100	0	70	25	22	28	22	1.99
23503414--23503461	18	2.7	18	90	0	60	25	22	27	25	2.00
23506927--23507023	50	1.9	50	97	0	185	37	9	26	26	1.87
23519559--23519608	20	2.4	21	81	15	52	42	10	0	48	1.37
23526339--23526388	20	2.4	21	81	15	52	42	10	0	48	1.37
23528897--23528971	11	6.7	11	73	19	50	40	1	2	56	1.22
23537764--23537818	20	2.8	20	78	13	60	49	0	1	49	1.11
23541465--23541489	1	25.0	1	100	0	50	100	0	0	0	0.00
23556652--23556746	15	6.3	15	70	4	57	24	31	14	29	1.95
23556650--23556870	60	3.7	61	82	5	184	23	27	14	34	1.94
23556712--23556850	30	4.6	30	90	3	199	22	26	13	37	1.91
23560042--23560244	15	13.5	15	67	12	96	23	27	15	33	1.94
23560042--23560156	30	3.8	30	77	2	108	24	28	15	31	1.96
23560089--23560291	30	6.8	30	79	5	214	22	26	14	36	1.92
23560090--23560303	90	2.4	90	93	1	358	21	27	14	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23561349--23561374	12	2.2	12	100	0	52	42	23	0	34	1.54
23568288--23568318	16	1.9	16	93	0	53	61	0	16	22	1.34
23569112--23569165	26	2.1	26	92	0	90	27	25	20	25	1.99
23569155--23569242	38	2.3	38	81	9	101	34	13	22	29	1.93
23569279--23569371	37	2.5	36	78	5	96	24	13	27	33	1.94
23572024--23572063	15	2.7	15	88	3	55	22	10	0	67	1.20
23573215--23573321	26	4.1	26	73	4	90	31	22	19	26	1.98
23594769--23594802	15	2.2	16	89	5	52	14	11	0	73	1.10
23598658--23598717	29	2.1	28	84	3	75	68	15	3	13	1.34
23599650--23600294	319	2.0	319	99	0	1281	26	17	12	43	1.85
23629958--23629986	3	9.7	3	100	0	58	0	31	0	68	0.89
23644357--23644396	20	2.0	21	85	14	57	40	27	2	30	1.70
23653638--23653689	16	3.2	17	81	13	65	3	23	0	73	1.00
23654255--23654302	18	2.6	18	80	12	53	54	12	14	18	1.71
23660949--23660980	15	2.2	14	94	5	55	18	28	9	43	1.81
23665570--23665613	16	2.8	16	82	6	54	68	0	13	18	1.22
23671565--23671600	16	2.2	17	90	5	56	72	0	2	25	0.98
23671594--23671638	22	1.9	25	86	13	69	64	0	0	35	0.94
23675582--23675747	81	2.0	83	97	2	318	36	11	9	42	1.74
23678227--23678267	3	13.7	3	100	0	82	65	0	0	34	0.93
23684709--23684743	18	1.9	19	88	11	56	54	2	2	40	1.30
23688437--23688471	17	2.1	17	89	5	54	54	5	11	28	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23689221--23689272	27	2.0	26	88	11	79	34	26	15	23	1.94
23690093--23690131	3	13.0	3	100	0	78	33	0	0	66	0.92
23703936--23703962	7	3.9	7	100	0	54	11	29	0	59	1.32
23711159--23711201	20	2.2	20	87	8	61	20	20	4	53	1.63
23713812--23713860	10	4.9	10	77	22	50	79	0	20	0	0.73
23713813--23713860	17	2.7	18	75	21	55	79	0	20	0	0.74
23725904--23725942	3	13.0	3	88	0	51	0	41	0	58	0.98
23733515--23733624	54	2.0	54	98	0	211	29	23	17	30	1.97
23734422--23734475	22	2.5	22	96	0	99	27	31	18	22	1.97
23734617--23734650	17	2.1	17	88	5	52	50	14	0	35	1.44
23737663--23737689	11	2.5	11	100	0	54	40	7	0	51	1.30
23747831--23747857	11	2.5	11	100	0	54	40	0	29	29	1.57
23753932--23754012	38	2.1	38	97	0	153	19	12	25	41	1.87
23754962--23755004	22	1.9	23	90	4	70	27	18	11	41	1.85
23774315--23774379	26	2.5	26	84	0	76	24	18	26	30	1.98
23774335--23774388	26	2.1	26	82	0	63	29	25	22	22	1.99
23779756--23779802	19	2.5	19	89	0	76	63	6	12	17	1.48
23781563--23781605	18	2.4	18	96	0	77	25	0	37	37	1.56
23793595--23793878	52	5.5	51	82	1	316	32	22	17	28	1.96
23793598--23793873	103	2.7	104	83	2	340	32	22	17	27	1.97
23800802--23801097	52	5.7	52	84	3	337	32	24	15	27	1.96
23804552--23804598	24	2.0	24	87	8	69	27	14	8	48	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23812750--23812800	17	3.0	17	86	11	61	17	13	7	60	1.56
23816662--23816741	37	2.2	37	88	0	115	26	30	21	22	1.99
23816715--23816838	37	3.4	37	80	4	135	33	23	14	29	1.94
23816859--23816893	13	2.8	13	91	4	54	31	20	22	25	1.98
23817685--23817715	16	1.9	16	93	0	53	22	16	0	61	1.34
23820277--23820320	10	4.6	10	83	5	56	81	0	18	0	0.68
23820757--23820870	37	3.1	37	82	2	104	33	28	14	23	1.94
23820808--23820899	37	2.5	37	83	5	114	38	25	9	27	1.87
23830395--23830499	37	2.8	37	85	0	120	30	27	15	26	1.96
23830446--23830567	37	3.3	37	81	3	120	32	26	13	27	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163