genome.fa.s8.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  125  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34523349--34523396	9	5.2	9	80	9	53	0	16	0	83	0.65
34523349--34523408	22	2.8	21	90	5	102	0	16	0	83	0.65
34524304--34524345	17	2.4	18	84	11	61	0	16	2	80	0.81
34524388--34524422	10	3.4	10	88	4	52	0	14	0	85	0.59
34525799--34525934	43	3.2	43	77	2	121	31	27	13	27	1.94
34531149--34531188	18	2.2	19	86	8	57	47	2	2	47	1.29
34532587--34532685	41	2.4	41	94	0	171	14	33	25	27	1.94
34534436--34534652	109	2.0	110	92	0	364	41	15	11	31	1.82
34538485--34538552	35	1.9	35	91	5	111	32	1	4	61	1.24
34538491--34538565	31	2.4	30	75	14	73	32	2	4	61	1.28
34538558--34538591	13	2.6	13	80	0	50	35	0	0	64	0.94
34539872--34539928	17	3.4	17	90	7	89	40	0	3	56	1.17
34540564--34540605	22	1.9	22	95	0	75	59	0	0	40	0.97
34541642--34541873	30	7.9	29	83	8	242	37	25	3	33	1.73
34541642--34541873	60	3.9	59	83	10	282	37	25	3	33	1.73
34542216--34542509	97	3.0	97	91	1	473	27	17	16	37	1.92
34551802--34551834	3	11.0	3	93	0	57	63	0	33	3	1.10
34553280--34553305	13	2.0	13	100	0	52	46	23	7	23	1.78
34553802--34553833	15	2.1	15	100	0	64	56	0	0	43	0.99
34554873--34555164	30	10.0	29	81	8	238	35	26	3	34	1.72
34555275--34555304	15	1.9	16	93	6	53	20	10	0	70	1.16
34555431--34555724	97	3.0	97	91	0	453	28	18	16	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34558851--34558912	31	2.0	31	93	0	106	41	9	11	37	1.74
34560043--34560259	109	2.0	109	92	1	364	41	14	11	32	1.81
34560676--34561424	371	2.0	372	92	0	1250	39	15	20	24	1.92
34562632--34562770	46	3.1	45	85	8	169	25	16	25	32	1.96
34562666--34563052	39	9.4	42	76	11	295	25	16	28	29	1.96
34562710--34563055	81	4.3	81	85	3	428	25	15	29	29	1.96
34562754--34563055	163	1.9	162	87	3	446	25	15	29	29	1.96
34563412--34564083	49	13.7	49	78	2	544	19	26	17	36	1.93
34565055--34565111	7	8.1	7	77	14	64	0	15	0	84	0.63
34565058--34565110	6	8.8	6	84	12	65	0	15	0	84	0.61
34565060--34565112	21	2.8	20	86	13	76	0	15	0	84	0.61
34565057--34565112	16	3.2	16	85	14	76	0	14	0	85	0.59
34566010--34566051	17	2.4	18	84	11	61	0	16	2	80	0.81
34566094--34566123	13	2.2	14	94	5	53	0	16	0	83	0.65
34569080--34569297	109	2.0	109	89	1	330	40	15	10	33	1.81
34573670--34573727	10	5.9	10	85	4	64	8	0	15	75	1.02
34573684--34573727	5	8.8	5	79	0	52	4	0	20	75	0.98
34574154--34574341	46	4.3	43	78	11	165	23	20	23	32	1.98
34574269--34574485	39	5.4	39	77	8	220	24	15	30	29	1.95
34574226--34574485	81	3.2	80	82	3	297	25	15	29	30	1.95
34574888--34575518	98	6.4	98	74	3	437	20	24	17	37	1.93
34574918--34575497	147	3.9	143	74	7	407	20	25	17	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34574836--34575492	49	13.3	49	76	6	317	20	24	17	38	1.93
34575111--34575545	147	3.0	145	73	10	380	20	25	17	36	1.94
34576493--34576552	7	8.7	7	72	17	54	1	18	0	80	0.80
34577452--34577483	16	1.9	17	93	6	57	0	18	0	81	0.70
34577417--34577552	72	1.9	71	80	10	161	10	19	9	60	1.56
34580032--34580300	109	2.5	108	84	8	313	42	13	12	31	1.82
34580087--34580300	109	2.0	109	92	3	360	42	13	11	32	1.81
34582598--34582718	50	2.4	50	79	2	127	34	2	9	53	1.46
34582703--34582736	13	2.6	13	80	0	50	35	0	0	64	0.94
34584019--34584075	17	3.4	17	90	7	89	40	0	3	56	1.17
34584683--34584729	21	2.2	21	92	0	76	59	0	0	40	0.97
34585762--34586134	30	12.7	30	76	10	222	37	24	3	34	1.72
34585769--34586106	59	5.8	59	75	11	241	37	23	3	35	1.72
34585762--34585991	89	2.6	89	82	6	261	39	23	2	34	1.69
34586385--34586678	97	3.0	97	91	0	462	28	18	15	37	1.91
34589932--34589956	8	3.1	8	100	0	50	24	24	12	40	1.88
34594565--34594652	44	2.0	44	100	0	176	29	9	25	36	1.86
34598183--34599060	210	4.2	210	87	1	1176	36	19	22	21	1.95
34599361--34599415	17	3.2	17	82	7	67	40	0	5	54	1.23
34599360--34599434	28	2.6	29	87	4	98	41	1	4	53	1.28
34600051--34600097	21	2.2	21	92	0	76	59	0	0	40	0.97
34601108--34601320	30	7.3	29	75	11	152	35	27	3	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34603023--34603085	14	4.4	13	78	11	54	9	3	9	77	1.09
34603025--34603094	14	4.7	14	74	12	52	7	2	11	78	1.05
34603520--34603746	46	5.3	43	74	13	152	23	19	25	31	1.98
34603513--34603706	46	4.5	41	79	11	153	24	18	24	32	1.97
34603635--34603933	39	7.4	39	78	10	296	26	16	28	28	1.97
34603634--34603936	81	3.7	81	84	4	412	26	16	28	28	1.97
34603635--34603928	163	1.8	162	87	3	439	26	16	27	28	1.97
34604293--34604973	49	13.9	49	80	2	560	19	26	16	37	1.93
34605417--34605613	108	1.8	108	88	0	304	36	12	21	29	1.91
34605934--34605968	7	5.1	7	86	6	54	0	11	0	88	0.51
34605936--34605969	14	2.3	15	95	5	61	0	8	0	91	0.43
34606942--34606978	13	2.8	14	84	12	51	0	18	0	81	0.70
34606951--34606980	16	1.9	15	93	6	51	0	13	0	86	0.57
34609915--34610130	109	2.0	109	93	1	371	40	16	11	31	1.83
34610389--34610453	26	2.6	25	78	4	67	69	6	7	16	1.33
34613621--34613836	109	2.0	109	93	1	371	40	16	11	31	1.83
34614095--34614159	26	2.6	25	78	4	67	69	6	7	16	1.33
34618501--34618557	5	11.6	5	84	3	53	10	0	10	78	0.95
34618501--34618558	10	5.9	10	83	4	64	10	0	12	77	0.99
34618985--34619093	46	2.4	44	83	7	121	23	21	20	34	1.96
34619100--34619316	39	5.4	39	75	9	159	25	15	29	29	1.96
34619100--34619319	82	2.7	81	85	4	293	25	15	29	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34619667--34620346	49	13.9	47	78	6	376	20	24	17	37	1.93
34619662--34620325	98	6.8	98	76	5	493	20	25	17	37	1.93
34619662--34620334	147	4.6	148	79	5	623	19	25	17	37	1.93
34622266--34622307	17	2.4	18	88	11	70	0	16	0	83	0.65
34622348--34622383	10	3.5	10	85	7	54	0	13	0	86	0.58
34622347--34622380	16	2.0	16	88	11	50	0	17	0	82	0.67
34624921--34625134	109	2.0	109	91	1	349	40	14	12	32	1.83
34629088--34629197	50	2.2	50	83	3	132	34	2	9	53	1.47
34630499--34630572	17	4.4	17	87	5	105	41	0	4	54	1.19
34631201--34631243	18	2.4	18	88	0	68	58	0	0	41	0.98
34632249--34632433	30	6.2	29	80	11	178	37	24	2	35	1.68
34632241--34632433	60	3.2	59	83	9	230	37	24	2	35	1.68
34632235--34632447	90	2.4	89	82	7	252	36	25	2	35	1.69
34632774--34633066	97	3.0	96	88	1	424	28	18	16	36	1.92
34641258--34641293	3	12.0	3	93	0	63	63	2	33	0	1.08
34643455--34644229	210	3.7	210	87	1	1043	37	19	21	20	1.94
34644594--34644688	6	15.8	6	70	16	63	45	1	2	51	1.20
34644594--34644683	17	5.4	17	79	11	105	44	1	2	52	1.20
34645306--34645346	12	3.4	12	82	0	55	56	0	0	43	0.99
34646357--34646449	30	3.1	30	87	7	129	39	23	2	34	1.67
34646357--34646485	30	4.4	30	83	9	124	36	23	3	37	1.71
34646379--34646506	30	4.3	29	83	3	105	35	23	4	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34646379--34646533	30	5.3	29	79	9	97	34	23	4	36	1.76
34646849--34647142	97	3.0	97	90	0	471	28	17	15	38	1.90
34651985--34652057	27	2.7	27	72	8	69	41	17	17	23	1.90
34652184--34652238	26	2.1	26	93	0	92	43	27	10	18	1.83
34655797--34655846	16	2.8	19	73	17	61	52	10	12	26	1.70
34656129--34656269	47	3.0	47	100	0	282	36	19	17	27	1.93
34671957--34672008	15	3.7	14	78	12	54	59	5	5	28	1.44
34680624--34680900	40	6.9	40	82	3	297	37	28	18	15	1.91
34680636--34680895	80	3.3	79	86	2	340	37	27	18	16	1.92
34680622--34680901	120	2.3	121	85	2	350	37	28	18	15	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163