genome.fa.s8.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  145  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39457397--39457442	24	1.9	24	86	8	67	32	21	0	45	1.52
39460920--39460952	2	16.5	2	100	0	66	0	48	0	51	1.00
39460952--39460986	2	17.5	2	100	0	70	48	0	0	51	1.00
39464638--39464671	14	2.2	16	90	10	54	50	2	0	47	1.16
39464641--39464671	16	1.9	16	93	0	53	48	3	0	48	1.17
39466195--39466266	31	2.3	32	83	9	96	44	23	8	23	1.80
39471203--39471251	23	2.2	22	80	16	57	32	10	16	40	1.82
39472186--39472214	10	2.7	11	89	10	51	75	0	24	0	0.80
39478040--39478774	366	2.0	369	98	1	1413	30	15	11	42	1.83
39480246--39480290	19	2.4	19	81	7	56	37	0	4	57	1.19
39481904--39482133	29	7.8	30	69	21	166	33	3	30	33	1.73
39481894--39482144	59	4.3	59	90	3	391	33	3	30	33	1.74
39484080--39484163	6	14.8	6	70	22	58	53	1	1	44	1.16
39484097--39484163	17	4.0	16	84	9	64	55	1	1	41	1.18
39484098--39484166	11	6.2	11	75	12	61	52	1	1	44	1.19
39484099--39484163	28	2.3	28	81	5	78	55	1	1	41	1.18
39484122--39484166	17	2.8	16	86	6	72	53	0	2	44	1.13
39490174--39490227	8	6.4	8	79	10	54	14	3	1	79	0.95
39490176--39490227	22	2.4	21	78	12	61	15	3	1	78	0.98
39491500--39491529	16	1.9	16	93	6	53	46	6	6	40	1.56
39491764--39491808	19	2.4	19	81	7	56	37	0	4	57	1.19
39491808--39491837	14	2.1	14	93	0	51	16	6	3	73	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39492607--39492646	16	2.5	17	84	12	57	15	10	0	75	1.05
39494109--39494134	13	2.0	13	100	0	52	84	0	15	0	0.62
39506137--39506206	35	2.0	34	81	8	79	52	4	0	42	1.20
39506188--39506228	19	2.1	19	86	4	55	63	0	0	36	0.95
39520893--39520917	2	12.5	2	100	0	50	48	0	0	52	1.00
39537123--39537168	22	2.0	24	84	16	62	54	2	2	41	1.25
39537246--39537277	14	2.3	14	100	0	64	53	0	6	40	1.26
39543372--39543430	27	2.3	25	82	5	64	72	5	1	20	1.12
39543455--39543511	19	3.0	18	80	12	53	73	3	1	21	1.07
39543455--39543503	16	3.2	16	80	13	59	75	4	2	18	1.06
39543518--39543546	14	2.1	14	100	0	58	72	6	0	20	1.07
39543483--39543536	19	2.9	18	81	8	54	72	3	1	22	1.10
39545598--39545645	20	2.2	21	78	14	53	41	4	22	31	1.73
39547108--39547191	33	2.6	32	77	15	84	11	35	21	30	1.90
39550533--39550557	3	8.3	3	100	0	50	0	0	64	36	0.94
39550978--39551024	23	2.0	24	87	4	69	61	12	2	23	1.42
39556867--39556891	3	8.3	3	100	0	50	32	0	0	68	0.90
39562263--39562289	2	13.5	2	100	0	54	51	0	0	48	1.00
39562698--39562739	20	2.1	20	82	8	50	47	7	0	45	1.30
39584948--39585005	23	2.4	24	83	11	66	58	0	5	36	1.20
39585953--39585987	2	17.5	2	93	0	61	45	0	54	0	0.99
39602203--39602393	52	3.7	52	87	4	244	31	16	21	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39602203--39602432	104	2.2	104	83	6	279	31	16	20	31	1.95
39602388--39602506	60	2.0	61	81	1	141	32	13	21	31	1.92
39607992--39608031	21	1.9	21	89	0	62	22	12	27	37	1.90
39610918--39610961	23	2.0	22	82	13	54	50	18	6	25	1.71
39623037--39623092	24	2.3	24	96	0	103	8	5	46	39	1.58
39623075--39623124	15	3.5	15	76	15	61	10	2	56	32	1.44
39623051--39623124	21	3.4	21	84	5	76	9	4	51	35	1.53
39623075--39623133	27	2.2	27	93	0	100	13	1	52	32	1.50
39623081--39623139	6	9.3	6	82	10	55	15	1	50	32	1.54
39623075--39623127	21	2.5	21	90	0	79	11	1	54	32	1.47
39623698--39623726	1	29.0	1	100	0	58	0	0	0	100	0.00
39626582--39626632	21	2.4	21	100	0	102	45	0	23	31	1.53
39628190--39628233	12	3.4	13	81	9	54	65	0	0	34	0.93
39628177--39628242	34	1.9	33	82	17	82	63	1	3	31	1.19
39629070--39629104	14	2.5	13	86	13	52	74	5	8	11	1.22
39629981--39630056	26	2.9	26	74	3	73	31	14	10	43	1.79
39632620--39632672	21	2.6	19	80	13	61	56	1	1	39	1.21
39632620--39632672	20	2.6	21	82	11	65	56	1	1	39	1.21
39638529--39638572	19	2.4	19	80	3	54	43	4	4	47	1.44
39638618--39638732	56	2.0	57	81	8	137	38	11	7	42	1.70
39644958--39644993	18	1.9	19	88	5	56	50	5	0	44	1.25
39644953--39645003	19	2.7	19	78	6	59	54	7	0	37	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39650365--39650403	21	1.9	20	94	5	69	61	0	38	0	0.96
39650370--39650410	15	2.6	15	92	7	64	63	0	36	0	0.95
39650450--39650495	20	2.4	19	82	7	56	34	2	2	60	1.21
39653821--39653859	15	2.6	15	91	0	69	0	48	0	51	1.00
39655593--39655694	30	3.4	30	62	9	73	45	10	5	38	1.64
39655727--39655776	16	3.2	16	73	21	52	34	0	6	60	1.21
39655973--39656240	94	2.9	95	87	5	388	48	11	2	37	1.52
39656198--39656242	21	2.2	21	88	4	65	57	13	2	26	1.48
39656577--39656648	6	11.7	6	73	8	56	0	26	0	73	0.83
39656585--39656631	19	2.5	19	86	3	60	0	31	0	68	0.90
39656578--39656653	13	5.8	13	77	19	54	0	27	0	72	0.85
39657301--39657331	14	2.2	14	94	0	53	87	0	12	0	0.55
39658194--39658222	9	3.2	9	100	0	58	44	34	10	10	1.73
39667125--39667166	22	1.9	22	95	0	75	59	4	11	23	1.51
39667160--39667196	17	2.2	17	95	0	65	54	0	27	18	1.44
39667169--39667215	24	2.0	24	91	8	78	48	0	31	19	1.49
39667929--39667973	15	2.9	15	83	3	54	24	20	4	51	1.66
39672231--39672256	8	3.2	8	100	0	52	50	0	23	26	1.50
39673149--39673284	63	2.2	63	94	0	236	36	8	4	50	1.52
39692158--39692203	21	2.2	21	84	7	58	28	0	2	69	1.00
39692157--39692215	27	2.2	28	78	9	68	33	0	1	64	1.04
39692448--39692519	29	2.5	28	84	8	90	31	6	15	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39692393--39692489	50	1.9	50	81	4	115	30	8	14	46	1.74
39692590--39692646	29	2.0	29	89	0	87	26	7	22	43	1.78
39692423--39693376	128	7.5	128	90	0	1469	32	7	15	44	1.74
39692704--39692775	29	2.5	28	82	8	81	30	6	16	45	1.74
39692832--39692903	29	2.5	29	77	8	83	25	8	23	43	1.81
39692423--39693376	256	3.7	256	97	0	1730	32	7	15	44	1.74
39692960--39693031	29	2.5	28	82	8	81	30	6	16	45	1.74
39693098--39693159	29	2.1	29	81	0	79	27	9	19	43	1.82
39693216--39693287	29	2.5	29	93	0	117	27	9	19	43	1.82
39694641--39694683	19	2.3	19	84	8	52	60	2	0	37	1.10
39694648--39694700	28	2.0	25	82	17	63	58	3	0	37	1.16
39696183--39696219	13	2.9	13	88	11	51	78	0	0	21	0.75
39697410--39697456	21	2.2	21	84	0	58	36	14	14	34	1.88
39699711--39699753	19	2.3	19	84	8	52	58	4	0	37	1.19
39705257--39705287	16	1.9	16	93	0	53	12	41	6	38	1.69
39705582--39705625	17	2.6	17	82	10	56	31	0	4	63	1.14
39711881--39711966	26	3.1	27	67	23	70	53	1	0	45	1.07
39711878--39712022	58	2.5	58	86	7	197	52	0	1	45	1.14
39711878--39712015	29	4.7	30	70	18	94	51	0	0	47	1.11
39711997--39712047	24	2.1	24	82	10	59	56	0	5	37	1.23
39717000--39717029	12	2.5	12	94	0	51	16	16	33	33	1.92
39724497--39724532	18	2.0	18	88	0	54	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39724557--39724591	13	2.8	13	91	4	54	28	2	0	68	1.04
39724557--39724592	12	2.9	12	88	8	54	27	5	0	66	1.13
39724871--39724913	14	3.1	13	86	10	50	46	0	0	53	1.00
39729769--39729803	18	1.9	18	94	0	61	42	0	0	57	0.99
39731719--39731812	39	2.4	39	96	0	179	28	22	21	27	1.99
39733800--39733832	15	2.1	16	88	5	50	27	6	0	66	1.15
39739541--39739593	18	2.9	18	77	0	61	33	7	32	26	1.84
39746691--39746728	14	2.7	14	87	0	58	44	13	13	28	1.81
39746910--39746943	16	2.1	17	88	5	52	35	8	0	55	1.31
39746905--39746944	21	1.9	21	84	0	53	37	7	0	55	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163