genome.fa.s8.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  107  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30249783--30249836	21	2.6	21	84	0	63	25	27	11	35	1.90
30249877--30249932	21	2.5	21	85	8	67	41	32	8	17	1.81
30261716--30261740	11	2.3	11	100	0	50	36	28	8	28	1.85
30263267--30263348	29	2.8	29	76	9	78	35	4	24	35	1.77
30263331--30263409	29	2.7	29	72	16	72	30	2	32	34	1.71
30263402--30263478	29	2.6	30	81	6	86	28	2	22	46	1.65
30265341--30265386	19	2.4	19	89	7	67	23	4	13	58	1.52
30265380--30265416	17	2.2	17	95	0	65	40	0	0	59	0.97
30265808--30266479	200	3.4	200	88	3	1026	20	22	22	35	1.96
30266345--30266592	106	2.3	108	89	4	365	19	22	23	35	1.96
30266996--30267220	100	2.2	99	77	6	236	14	27	17	40	1.88
30268200--30268297	7	14.3	7	72	16	80	0	16	2	81	0.78
30268197--30268261	22	3.0	22	89	8	98	0	18	0	81	0.69
30268197--30268297	13	7.9	13	77	11	93	0	17	1	80	0.81
30268200--30268292	41	2.2	42	84	3	116	0	16	2	81	0.78
30273553--30273654	29	3.5	28	76	11	80	39	3	19	37	1.70
30273554--30273648	30	3.2	30	72	11	88	41	3	20	35	1.68
30273665--30273732	29	2.3	29	85	5	93	32	2	25	39	1.71
30273680--30273743	29	2.2	29	85	2	83	28	3	20	48	1.64
30275588--30275633	19	2.4	20	89	7	69	23	4	13	58	1.52
30275627--30275663	17	2.2	17	90	0	56	37	0	2	59	1.12
30287495--30287529	16	2.2	16	90	10	54	34	14	28	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30292416--30292466	21	2.4	21	86	0	75	56	11	1	29	1.46
30293766--30293797	13	2.3	15	89	10	50	56	9	6	28	1.55
30294265--30294295	15	2.0	16	93	6	55	64	0	9	25	1.24
30296614--30296676	24	2.6	24	87	0	90	25	14	9	50	1.72
30297536--30297566	16	1.9	16	93	0	53	51	0	0	48	1.00
30308929--30308962	6	5.7	6	92	0	59	29	0	20	50	1.49
30310595--30310673	30	2.5	31	77	4	88	44	8	3	43	1.53
30318958--30319075	31	3.9	31	78	14	147	26	16	8	49	1.74
30318968--30319096	31	4.2	31	74	17	101	27	15	9	47	1.76
30318958--30319151	91	2.1	90	83	6	232	26	16	11	45	1.81
30319300--30319430	60	2.2	60	84	2	174	45	14	18	21	1.84
30321979--30322036	21	2.8	21	91	0	98	29	20	20	29	1.98
30325728--30325976	52	4.8	52	84	0	291	30	13	22	33	1.92
30329677--30330047	196	1.9	196	94	0	661	34	11	20	33	1.88
30330018--30330306	52	5.5	52	86	4	375	27	12	22	37	1.90
30331012--30331062	21	2.4	22	81	15	63	27	15	29	27	1.96
30332989--30333034	24	1.9	24	86	8	67	30	4	6	58	1.43
30336679--30336725	11	4.6	10	77	15	51	76	2	17	4	1.04
30359728--30359793	27	2.4	27	82	5	80	37	22	13	25	1.91
30359927--30359982	22	2.5	23	76	2	69	26	26	23	23	2.00
30361436--30361492	27	2.2	26	90	3	87	42	3	5	49	1.42
30363441--30363535	30	3.2	30	96	0	172	56	15	4	23	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30364212--30364254	15	2.6	16	82	10	52	39	6	2	51	1.42
30364381--30364896	105	5.0	103	79	8	519	45	1	12	40	1.50
30364381--30364860	26	18.5	25	66	21	120	45	1	13	40	1.50
30364381--30364834	52	8.8	53	69	19	262	44	0	13	40	1.50
30364382--30364898	205	2.5	204	86	4	682	44	1	12	41	1.50
30364794--30364860	27	2.5	26	87	2	89	47	1	10	40	1.47
30364434--30364921	52	9.4	52	68	21	179	44	1	12	41	1.49
30367708--30367911	52	4.1	51	83	6	238	19	26	17	35	1.94
30367944--30368101	26	6.2	26	75	5	153	18	23	18	39	1.92
30367831--30367992	83	2.0	81	90	3	254	16	29	19	34	1.94
30367708--30367998	24	11.4	24	68	11	123	18	27	18	35	1.94
30367944--30368101	76	2.1	76	87	0	226	18	23	18	39	1.92
30367708--30368101	50	7.7	50	73	13	196	18	25	18	37	1.94
30370428--30370457	16	1.9	16	93	6	53	10	6	10	73	1.25
30371754--30371794	16	2.6	16	84	7	57	17	19	19	43	1.88
30373957--30374098	52	2.7	52	80	7	171	37	16	26	20	1.93
30374800--30374882	39	2.1	39	82	4	96	20	21	38	19	1.93
30377313--30377358	24	1.9	24	86	8	67	47	28	8	15	1.74
30379060--30379107	22	2.2	21	81	3	60	39	10	0	50	1.37
30384853--30384906	21	2.6	21	77	16	58	35	24	7	33	1.83
30386682--30386729	22	2.2	21	77	3	51	37	12	0	50	1.41
30389227--30389298	28	2.6	28	80	2	83	26	18	23	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30389279--30389463	55	3.4	54	81	4	201	27	16	22	34	1.95
30392050--30392300	73	3.4	74	88	3	339	12	20	32	34	1.90
30392050--30392302	110	2.3	111	85	2	332	12	20	32	34	1.90
30392050--30392302	37	6.9	37	87	2	332	12	20	32	34	1.90
30394771--30394800	15	1.9	16	93	6	53	66	3	0	30	1.07
30397455--30397485	13	2.4	13	94	0	53	22	3	29	45	1.68
30402451--30402491	21	2.0	21	85	0	55	26	60	0	12	1.31
30403638--30403794	79	2.0	80	80	8	178	28	14	17	40	1.89
30416014--30416044	15	2.0	16	93	6	55	51	9	32	6	1.60
30422169--30422198	15	1.9	16	93	6	53	63	0	0	36	0.95
30426075--30426103	12	2.3	13	94	5	51	0	27	0	72	0.85
30432105--30432146	11	3.9	11	81	3	50	40	0	4	54	1.21
30432107--30432168	17	3.8	17	80	6	74	40	0	4	54	1.22
30432105--30432146	22	2.0	22	85	4	59	40	0	4	54	1.21
30432111--30432202	27	3.3	27	73	3	76	45	2	4	47	1.34
30432124--30432177	16	3.3	16	79	5	54	42	1	1	53	1.22
30434191--30434276	29	2.9	30	77	18	88	32	31	1	34	1.66
30434257--30434408	29	5.2	29	69	25	113	34	30	3	30	1.74
30434224--30434711	59	8.3	59	78	9	442	33	27	2	35	1.72
30434197--30434681	117	4.1	117	79	7	525	33	27	2	35	1.72
30434193--30434598	30	13.8	30	66	22	143	33	29	2	34	1.72
30440126--30440175	25	2.0	25	84	7	66	38	2	0	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30443178--30443532	70	5.1	70	77	6	308	29	16	24	29	1.97
30443275--30443564	70	4.2	70	79	3	271	27	17	26	28	1.97
30443305--30443563	140	1.9	140	85	0	365	27	17	26	28	1.97
30447241--30447296	13	4.2	13	75	4	58	26	19	33	19	1.96
30447240--30447332	40	2.3	40	81	7	109	33	17	29	20	1.95
30452672--30452725	27	2.0	27	96	0	99	38	18	27	14	1.90
30452824--30452934	54	2.1	54	89	0	168	24	24	19	31	1.98
30462769--30462810	17	2.5	17	80	3	50	0	16	2	80	0.81
30469436--30469577	70	2.0	70	97	0	266	27	11	30	30	1.91
30478994--30479036	19	2.3	19	84	8	61	48	2	0	48	1.14
30483360--30483404	17	2.6	17	92	0	81	24	20	24	31	1.98
30484114--30484169	21	2.7	21	91	5	87	33	12	28	25	1.92
30488845--30488898	21	2.6	21	87	0	72	29	9	31	29	1.88
30495431--30495479	21	2.3	21	77	19	57	24	10	20	44	1.82
30502365--30502418	21	2.6	21	81	0	63	33	9	24	33	1.87
30510560--30510598	16	2.4	17	86	8	62	33	23	0	43	1.54
30510568--30510601	16	2.1	16	100	0	68	41	23	0	35	1.55
30519316--30519373	23	2.4	24	85	8	73	10	5	18	65	1.41
30520194--30520239	22	2.0	22	87	8	65	21	0	2	76	0.90
30520201--30520239	7	5.1	7	87	12	51	23	0	0	76	0.78
30521963--30521989	7	3.9	7	100	0	54	29	29	25	14	1.95
30521951--30521998	14	3.5	14	85	2	62	37	27	20	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30547541--30547581	22	1.9	21	85	5	55	26	17	24	31	1.97
30551821--30552632	406	2.0	406	98	0	1552	46	15	14	23	1.82
30554407--30554448	18	2.3	18	95	0	75	23	19	33	23	1.97
30559097--30559138	17	2.4	17	80	15	50	52	0	23	23	1.47
30561383--30561417	18	1.9	18	88	0	52	14	17	40	28	1.88
30566282--30566323	17	2.4	17	80	15	50	52	0	23	23	1.47
30568646--30568689	22	2.0	24	82	13	58	29	15	11	43	1.82
30588251--30588285	18	1.9	18	88	0	52	60	0	37	2	1.12
30591751--30591798	25	2.0	23	84	8	60	12	39	2	45	1.54
30591763--30591811	24	2.2	23	82	10	57	10	42	0	46	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163