genome.fa.s8.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  38  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10056643--10056740	35	2.7	33	81	13	97	72	4	1	22	1.08
10056580--10056740	4	40.0	4	70	20	79	70	4	3	21	1.18
10056815--10056871	30	1.9	30	82	13	73	59	10	10	19	1.59
10063628--10063737	58	1.9	58	85	5	143	49	17	3	30	1.64
10065442--10065479	16	2.4	16	82	4	51	65	5	10	18	1.41
10065467--10065616	4	36.8	4	71	17	87	70	4	4	21	1.23
10065427--10065563	61	2.2	64	82	5	172	68	4	8	18	1.32
10065736--10065781	5	8.8	5	86	9	65	76	2	2	19	1.00
10065736--10065781	16	2.9	15	84	9	65	76	2	2	19	1.00
10065734--10065783	11	4.6	11	78	12	59	74	2	2	22	1.03
10068201--10068225	5	5.0	5	100	0	50	80	0	20	0	0.72
10071685--10071719	17	2.1	17	88	0	52	25	22	5	45	1.74
10072490--10072534	22	2.0	22	95	0	81	17	13	15	53	1.73
10080850--10080981	55	2.4	55	85	0	165	30	8	13	47	1.72
10083101--10083196	29	3.3	28	77	8	102	38	26	3	32	1.72
10083101--10083207	30	3.6	29	76	9	110	38	24	2	34	1.70
10083101--10083242	59	2.4	57	81	9	153	35	26	4	33	1.78
10083189--10083329	59	2.4	58	78	13	137	30	26	8	34	1.86
10085285--10085416	55	2.4	55	87	0	183	49	14	9	27	1.73
10086198--10086240	20	2.2	19	84	12	52	53	2	0	44	1.13
10086721--10086767	13	3.5	14	80	8	53	72	4	2	21	1.12
10086712--10086822	26	4.3	24	69	19	64	72	6	3	17	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10086798--10086865	26	2.6	27	75	11	70	67	4	0	27	1.09
10086712--10086865	4	37.5	4	69	21	52	70	5	2	21	1.21
10086987--10087031	5	8.6	5	82	7	54	73	4	2	20	1.11
10086987--10087031	16	2.9	15	80	9	54	73	4	2	20	1.11
10088794--10088841	25	2.0	24	84	12	62	66	2	16	14	1.34
10094529--10094691	4	40.0	4	69	23	67	69	4	3	22	1.21
10094529--10094691	9	16.9	9	66	25	50	69	4	3	22	1.21
10094587--10094654	15	4.5	15	75	17	61	72	4	1	22	1.11
10094584--10094676	11	8.5	10	73	15	53	70	4	1	23	1.11
10094587--10094667	34	2.4	34	81	8	94	71	4	1	22	1.12
10094819--10094857	5	7.6	5	82	5	51	74	5	0	20	1.01
10100964--10101055	17	5.7	16	83	11	116	42	1	1	55	1.14
10100952--10101055	6	18.0	6	71	18	78	42	0	1	54	1.17
10100952--10101055	11	9.0	11	71	15	68	42	0	1	54	1.17
10100952--10101055	17	6.4	16	77	13	97	42	0	1	54	1.17
10101029--10101071	16	2.6	16	85	3	50	53	0	2	44	1.13
10101415--10101476	26	2.4	26	78	10	72	40	24	9	25	1.85
10101856--10101880	3	8.3	3	100	0	50	64	0	0	36	0.94
10102114--10102153	21	1.9	21	85	10	55	42	0	15	42	1.46
10102981--10103097	58	2.0	59	88	1	173	30	32	4	32	1.77
10104986--10105093	56	1.9	56	84	3	144	49	15	4	30	1.65
10106839--10106980	4	34.8	4	72	13	85	69	4	4	21	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10106818--10106937	65	1.9	63	84	6	161	68	5	7	19	1.33
10106897--10106951	11	4.8	11	82	6	65	72	3	1	21	1.09
10106892--10106951	23	2.6	22	82	12	68	71	3	1	23	1.10
10107055--10107111	30	1.9	30	82	7	71	61	8	10	19	1.54
10107107--10107145	5	7.6	5	85	5	51	74	2	0	23	0.94
10108103--10108197	46	2.1	46	97	0	181	30	4	28	36	1.76
10109608--10109632	5	5.0	5	100	0	50	80	0	20	0	0.72
10118726--10118759	17	2.0	17	88	0	50	23	23	5	47	1.73
10119529--10119570	22	1.9	22	95	0	75	19	11	16	52	1.74
10128683--10128795	59	1.9	58	87	8	167	34	10	15	39	1.81
10129416--10129457	22	1.9	22	95	0	75	19	11	16	52	1.74
10138583--10138695	59	1.9	57	87	8	165	34	10	15	39	1.81
10139907--10140038	55	2.4	55	85	0	165	29	8	14	47	1.73
10142122--10142390	59	4.5	59	83	8	257	33	26	6	33	1.82
10142123--10142330	29	7.0	28	73	16	154	35	26	5	33	1.79
10142162--10142391	59	3.9	58	84	6	261	33	25	6	34	1.82
10142191--10142475	29	9.7	30	70	17	86	32	24	7	35	1.84
10144340--10144453	55	2.1	55	85	3	149	51	11	7	28	1.66
10145253--10145295	20	2.2	19	84	12	52	53	2	0	44	1.13
10145768--10145814	13	3.5	14	80	8	53	72	4	2	21	1.12
10145759--10145869	26	4.3	24	69	19	64	72	6	3	17	1.19
10145845--10145912	26	2.6	27	75	11	70	67	4	0	27	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10145759--10145912	4	37.5	4	69	21	52	70	5	2	21	1.21
10146033--10146077	5	8.6	5	82	7	54	73	4	2	20	1.11
10146033--10146077	16	2.9	15	80	9	54	73	4	2	20	1.11
10152165--10152297	58	2.3	58	89	0	203	46	21	0	31	1.56
10152242--10152325	42	2.0	42	92	0	141	48	19	0	32	1.49
10155044--10155256	59	3.6	58	80	9	211	36	25	4	33	1.76
10155050--10155254	30	7.0	30	79	7	206	35	25	4	34	1.76
10155098--10155293	59	3.3	58	85	4	234	34	26	6	33	1.81
10155364--10155425	28	2.2	28	91	5	99	32	24	11	32	1.90
10160075--10160152	7	10.3	7	73	20	52	79	1	16	2	0.91
10160075--10160146	16	4.6	16	72	16	53	79	1	16	2	0.93
10161151--10161315	50	3.3	50	72	8	154	40	21	24	12	1.88
10161173--10161338	51	3.3	51	74	8	176	39	24	23	12	1.89
10161136--10161363	101	2.3	101	89	1	350	43	21	23	11	1.84
10161488--10161632	77	1.9	76	82	4	184	26	28	17	27	1.97
10161761--10162556	207	3.9	207	90	0	1173	34	18	23	23	1.96
10162915--10162996	6	13.5	6	69	12	51	39	2	6	52	1.39
10162966--10163007	18	2.4	17	84	7	57	47	0	4	47	1.23
10165051--10165312	30	8.9	30	74	14	206	37	26	1	33	1.66
10165020--10165314	30	10.0	30	73	14	179	37	26	2	33	1.70
10165080--10165358	29	9.6	28	72	13	190	37	26	2	32	1.71
10165148--10165397	59	4.2	58	78	10	213	36	25	5	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10165261--10165397	58	2.3	59	88	1	204	35	24	8	32	1.84
10165575--10165624	21	2.5	20	76	17	52	24	18	6	52	1.67
10167202--10167309	4	26.8	4	71	19	64	70	3	4	21	1.21
10167202--10167300	11	9.1	11	66	17	55	70	4	5	20	1.22
10167157--10167309	64	2.4	64	80	11	179	68	4	7	19	1.31
10167257--10167309	19	2.9	19	81	13	60	71	3	1	22	1.12
10169241--10169270	6	4.8	6	95	4	51	53	0	30	16	1.44
10169914--10169938	5	5.0	5	100	0	50	80	0	20	0	0.72
10170882--10170942	6	10.5	6	79	13	74	42	3	1	52	1.27
10170882--10170953	17	4.2	17	78	16	76	43	2	2	51	1.30
10171307--10171439	58	2.3	58	93	0	221	46	21	0	31	1.56
10171384--10171467	42	2.0	42	86	9	118	48	19	0	32	1.49
10174148--10174245	30	3.3	30	84	2	119	39	25	3	31	1.71
10174136--10174227	30	3.1	30	85	4	125	38	28	2	31	1.69
10174353--10174414	28	2.2	28	85	5	81	33	25	9	30	1.88
10179476--10179554	7	10.3	7	73	20	52	79	0	16	3	0.87
10179476--10179551	15	4.9	15	73	13	57	78	0	17	3	0.89
10179487--10179551	17	3.8	17	78	10	62	78	0	16	4	0.91
10179476--10179555	25	3.5	22	78	20	83	78	0	17	3	0.89
10182374--10182533	60	2.7	61	92	1	252	46	13	16	23	1.82
10182401--10182504	31	3.4	31	70	23	94	46	14	17	22	1.84
10182395--10182533	32	4.6	31	72	12	112	45	12	17	23	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10182974--10183007	17	2.0	17	88	0	50	23	23	5	47	1.73
10183780--10183824	22	2.0	22	100	0	90	17	13	17	51	1.77
10188450--10188506	25	2.3	24	82	8	62	43	28	5	22	1.75
10189733--10189788	23	2.3	24	84	9	69	69	7	1	21	1.22
10189755--10189875	4	28.8	4	72	18	68	71	4	4	19	1.22
10189755--10189876	9	14.3	9	68	14	55	71	4	4	19	1.21
10189755--10189802	14	3.5	13	80	2	51	70	4	2	22	1.15
10189814--10189875	23	2.7	23	85	12	74	75	4	1	17	1.05
10191305--10191352	22	2.1	22	81	11	53	58	25	6	10	1.54
10196751--10196783	12	2.5	14	90	9	52	21	3	0	75	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163