genome.fa.s8.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  153  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42251134--42251186	27	1.9	28	88	3	81	54	11	13	20	1.69
42256636--42256731	41	2.3	41	89	3	140	31	6	26	36	1.81
42258405--42258472	33	2.1	33	88	5	102	57	5	13	23	1.58
42262259--42262325	27	2.4	27	92	5	107	38	5	5	49	1.52
42274138--42274172	19	1.9	17	88	11	52	20	11	0	68	1.20
42276690--42276751	31	2.0	31	96	0	115	41	12	17	27	1.86
42285191--42285405	105	2.0	105	96	1	396	35	7	34	22	1.83
42287737--42287771	18	1.9	18	88	0	52	31	14	2	51	1.57
42298104--42298285	52	3.5	52	84	6	242	28	15	23	32	1.95
42314717--42314745	2	14.5	2	100	0	58	0	51	0	48	1.00
42328594--42328674	21	4.0	20	76	16	69	45	0	0	54	0.99
42334493--42334526	11	2.9	11	91	8	50	32	0	2	64	1.08
42344438--42344569	70	1.9	66	81	6	156	34	9	12	43	1.76
42353903--42353939	15	2.4	16	91	8	60	32	0	5	62	1.18
42355281--42355310	13	2.3	13	94	0	51	26	36	16	20	1.93
42358729--42358768	21	1.9	21	100	0	80	25	25	10	40	1.86
42370559--42370592	17	1.9	18	88	5	52	32	32	8	26	1.87
42377745--42377792	23	2.1	23	100	0	96	20	14	16	47	1.82
42380152--42380187	18	1.9	19	88	5	56	30	0	0	69	0.89
42383140--42383178	18	2.2	18	86	9	53	20	23	0	56	1.42
42385895--42385937	21	2.0	21	82	8	52	30	0	25	44	1.55
42386022--42386078	6	9.5	6	96	0	105	49	0	31	19	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42403857--42403900	2	22.0	2	80	0	52	45	2	4	47	1.35
42405021--42405072	22	2.4	22	81	9	61	32	1	1	63	1.16
42443674--42443698	13	1.9	13	100	0	50	48	0	0	52	1.00
42459297--42459350	26	2.1	26	100	0	108	33	22	25	18	1.97
42471089--42471128	21	1.9	21	85	10	55	57	12	15	15	1.66
42476543--42476585	2	22.0	2	95	4	79	51	0	0	48	1.00
42479507--42479554	15	3.1	15	80	11	60	43	0	4	52	1.20
42479513--42479548	17	2.1	18	89	5	56	41	0	2	55	1.14
42495722--42495782	30	2.0	30	96	0	113	57	14	3	24	1.53
42496558--42496605	2	24.0	2	100	0	96	0	50	0	50	1.00
42502473--42502515	16	2.7	16	79	13	61	51	16	13	18	1.77
42506461--42506506	2	23.0	2	100	0	92	50	0	50	0	1.00
42514088--42514124	6	6.3	6	93	3	58	18	13	16	51	1.76
42519292--42519340	19	2.5	19	86	6	62	34	0	2	63	1.06
42519610--42519657	2	24.0	2	100	0	96	50	0	0	50	1.00
42519686--42519730	19	2.5	17	83	16	63	33	2	2	62	1.20
42519746--42519830	18	4.4	18	73	16	73	45	1	3	49	1.26
42520672--42520706	18	1.9	19	88	11	56	37	8	0	54	1.31
42523668--42523696	11	2.5	12	94	5	51	41	6	0	51	1.28
42524920--42525065	30	4.9	29	74	17	104	36	24	2	35	1.70
42524993--42525180	59	3.2	59	78	6	193	31	26	5	36	1.80
42525023--42525117	30	3.2	30	70	14	97	32	24	6	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42525015--42525154	29	4.8	28	68	17	88	28	24	7	40	1.81
42525141--42525220	40	2.0	40	82	4	99	40	20	1	38	1.60
42530408--42530464	26	2.2	26	84	6	71	42	0	3	54	1.17
42534365--42534398	16	2.1	17	88	5	52	41	0	0	58	0.98
42540167--42540209	22	2.0	21	81	9	50	46	0	11	41	1.40
42541434--42541503	35	2.0	35	100	0	140	28	2	20	48	1.63
42546523--42546562	20	2.0	21	90	5	64	57	2	7	32	1.40
42546528--42546568	20	2.0	20	86	9	57	56	2	7	34	1.40
42547612--42547654	20	2.1	21	86	4	61	60	6	4	27	1.43
42556287--42556331	3	15.3	3	95	4	83	68	0	0	31	0.89
42556986--42557026	14	3.0	14	82	7	57	48	0	0	51	1.00
42558161--42558201	20	2.0	20	100	0	82	26	19	0	53	1.45
42561153--42561185	12	2.7	13	86	13	52	66	6	0	27	1.15
42562344--42562373	15	2.0	15	93	0	51	33	3	0	63	1.11
42568126--42568236	55	2.0	55	100	0	222	34	19	9	36	1.84
42589026--42589146	57	2.1	58	87	4	174	23	18	9	48	1.76
42590738--42590919	58	3.1	59	92	2	296	32	3	31	31	1.74
42590738--42590926	30	6.5	28	72	19	147	33	3	30	31	1.75
42591863--42591902	21	1.9	21	89	0	62	42	5	5	47	1.47
42592788--42592869	6	13.8	6	74	12	71	54	1	3	40	1.26
42592789--42592880	17	5.6	17	84	7	109	55	2	3	39	1.28
42592789--42592847	31	1.9	31	92	0	100	55	0	5	38	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42596852--42596877	7	3.7	7	100	0	52	30	11	0	57	1.34
42597182--42597289	6	18.0	6	74	14	80	48	0	2	48	1.22
42597197--42597259	31	2.0	31	87	0	90	46	0	3	50	1.17
42597172--42597258	11	7.5	11	71	18	52	42	0	4	52	1.21
42597182--42597288	48	2.2	48	83	6	128	47	0	2	48	1.22
42597209--42597289	31	2.6	30	80	9	83	53	1	1	44	1.16
42598810--42599104	162	1.8	163	87	4	445	23	15	14	46	1.83
42598832--42599150	162	2.0	160	83	6	394	24	16	13	45	1.83
42599249--42599299	25	2.0	25	84	0	66	31	23	3	41	1.73
42599283--42599788	30	17.1	30	66	9	234	30	26	6	36	1.82
42599274--42599788	59	8.7	59	92	0	778	30	26	6	36	1.82
42609016--42609053	20	1.9	20	89	10	60	44	13	2	39	1.57
42620242--42620275	15	2.2	16	89	5	52	32	2	0	64	1.08
42620699--42620755	29	2.0	29	86	13	82	45	1	3	49	1.29
42622091--42622121	3	10.3	3	100	0	62	67	0	32	0	0.91
42649446--42649480	18	1.9	18	100	0	70	40	5	14	40	1.69
42650244--42650285	20	2.0	21	82	13	52	40	4	4	50	1.45
42661911--42661955	3	15.0	3	100	0	90	33	0	0	66	0.92
42666473--42666524	13	3.9	13	80	5	68	42	23	17	17	1.89
42666465--42666525	27	2.3	27	85	8	88	42	24	14	18	1.88
42671936--42672018	32	2.6	32	81	14	116	26	15	6	51	1.66
42673242--42673271	16	1.9	15	93	6	51	33	13	0	53	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42675812--42675843	16	2.1	16	94	5	57	12	12	3	71	1.25
42677845--42677882	17	2.2	18	85	4	51	44	2	2	50	1.30
42683387--42683718	165	2.0	165	100	0	664	35	15	16	32	1.90
42689946--42690089	23	6.2	23	85	9	168	11	26	22	39	1.88
42689946--42690078	71	1.9	69	87	6	196	12	27	22	38	1.89
42690054--42690128	39	1.9	39	91	0	123	12	22	21	44	1.85
42690088--42690181	23	4.0	23	75	16	86	11	25	19	43	1.84
42691271--42691315	23	2.0	23	86	0	63	31	13	20	35	1.91
42703816--42703962	73	2.0	73	98	0	285	23	10	21	44	1.83
42708375--42708409	7	5.0	7	100	0	70	0	42	28	28	1.56
42716669--42716706	4	9.5	4	100	0	76	26	0	23	50	1.50
42719164--42719202	15	2.5	17	84	15	50	25	5	0	69	1.09
42721685--42722811	142	7.9	142	95	0	1975	31	17	23	28	1.97
42725511--42725572	28	2.3	26	75	10	61	64	0	0	35	0.94
42735241--42735683	220	2.0	221	95	2	800	35	17	11	34	1.87
42745138--42745179	16	2.6	16	82	10	50	54	2	0	42	1.13
42751107--42751150	20	2.3	19	81	14	54	31	4	4	59	1.38
42755207--42755239	17	1.9	17	88	11	50	24	12	0	63	1.28
42756834--42756889	28	2.0	27	83	10	69	37	7	12	42	1.70
42757162--42757213	18	2.9	18	80	11	54	67	0	0	32	0.91
42764158--42764199	15	2.8	15	82	7	50	14	33	19	33	1.91
42765300--42765420	30	4.1	30	77	9	113	29	22	4	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42765322--42765475	30	5.1	30	81	9	143	33	20	2	43	1.65
42765402--42765475	31	2.4	32	88	6	116	39	17	1	41	1.58
42773764--42773790	14	1.9	14	100	0	54	40	22	7	29	1.81
42801399--42801435	3	12.3	3	100	0	74	67	0	32	0	0.91
42804413--42804443	7	4.4	7	91	0	53	29	25	0	45	1.54
42809752--42809791	21	1.9	21	89	0	62	25	12	7	55	1.63
42815717--42815768	18	3.0	18	81	10	56	46	1	0	51	1.12
42842890--42842988	20	4.9	20	71	4	83	22	17	9	51	1.73
42845210--42845240	2	15.5	2	100	0	62	51	0	0	48	1.00
42849900--42849934	18	1.9	18	88	0	52	11	11	60	17	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163