genome.fa.s8.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  134  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36516518--36516720	61	3.4	59	78	9	191	34	1	26	36	1.68
36516529--36516725	91	2.2	90	83	3	245	34	2	25	38	1.68
36516406--36516724	60	5.4	58	71	20	189	33	4	26	36	1.75
36516551--36516754	91	2.3	91	82	4	225	34	2	24	38	1.70
36517811--36517876	3	22.0	3	96	0	123	31	0	1	66	1.01
36518531--36518614	17	5.0	17	82	2	107	57	3	1	38	1.24
36518530--36518613	6	14.8	6	68	12	52	55	3	1	39	1.25
36518539--36518614	34	2.3	34	90	2	118	59	3	1	35	1.24
36518932--36519434	209	2.4	208	93	1	848	21	22	19	35	1.96
36519241--36519573	173	1.9	168	85	5	454	20	22	18	37	1.94
36521750--36521862	3	37.0	3	91	3	181	0	30	0	68	0.96
36533059--36533101	15	2.8	14	83	16	50	32	0	2	65	1.06
36533026--36533191	80	2.1	78	83	7	203	46	0	1	52	1.08
36538055--36538098	11	3.9	11	79	5	52	38	0	18	43	1.50
36538043--36538100	23	2.5	23	97	2	107	39	0	15	44	1.47
36538769--36538803	15	2.3	15	95	0	61	25	0	20	54	1.45
36538769--36538833	8	8.4	8	73	13	64	24	0	21	53	1.46
36538777--36538833	15	3.7	15	79	9	60	24	0	21	54	1.45
36538777--36538833	16	3.6	16	80	2	71	24	0	21	54	1.45
36541294--36541854	209	2.8	203	90	4	891	42	8	6	42	1.60
36542636--36542677	22	1.9	22	90	0	66	66	0	0	33	0.92
36543033--36543073	18	2.3	18	91	0	64	58	9	4	26	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36544404--36544435	15	2.1	16	94	5	57	43	3	6	46	1.44
36544995--36545066	17	4.3	16	80	5	72	34	4	5	55	1.42
36544987--36545067	34	2.4	34	85	4	101	34	3	4	56	1.38
36545005--36545077	34	2.1	34	87	9	105	36	2	5	54	1.38
36545018--36545084	17	4.0	17	77	7	75	41	2	2	52	1.32
36546822--36546923	30	3.5	30	83	2	118	38	26	4	30	1.77
36546841--36546938	30	3.3	29	80	12	101	32	27	5	34	1.79
36546886--36547080	62	3.3	60	78	14	183	34	24	3	37	1.71
36546953--36547141	86	2.2	88	91	2	303	33	23	3	39	1.72
36546920--36547170	29	8.5	29	72	13	147	33	24	4	37	1.76
36547050--36547171	59	2.1	58	84	1	154	31	24	5	38	1.79
36547138--36547278	60	2.4	57	82	13	162	30	26	11	31	1.91
36547127--36547253	29	4.3	29	71	9	87	33	26	9	30	1.88
36547184--36547278	29	3.2	28	72	10	75	31	24	12	31	1.92
36550044--36550076	14	2.3	15	89	5	50	33	0	21	45	1.52
36558629--36558678	11	4.6	11	82	9	59	46	0	0	54	1.00
36561387--36561440	25	2.2	25	89	0	81	51	1	3	42	1.30
36561529--36561600	31	2.4	31	79	13	87	51	4	0	44	1.20
36561569--36561595	12	2.2	12	100	0	54	48	7	0	44	1.31
36565284--36565317	13	2.6	13	86	13	52	85	0	11	2	0.71
36567203--36567271	29	2.3	29	82	7	86	34	7	24	33	1.83
36567298--36567370	29	2.7	26	85	12	85	42	0	20	36	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36567283--36567592	30	10.6	29	78	12	280	38	0	23	37	1.61
36567283--36567591	59	5.3	57	77	11	281	37	0	23	37	1.62
36568024--36568076	22	2.4	22	78	12	54	5	45	26	22	1.74
36569463--36570034	39	14.7	39	70	8	288	25	18	31	25	1.97
36569477--36569697	116	1.9	117	87	2	329	23	17	34	24	1.96
36569477--36569937	117	3.9	117	74	9	332	24	18	32	24	1.97
36569588--36570073	78	6.2	78	82	1	508	25	18	31	24	1.97
36577948--36577981	15	2.3	15	100	0	68	0	29	32	38	1.58
36582326--36582391	29	2.2	30	86	5	89	40	1	19	37	1.61
36582449--36582645	30	6.7	30	80	10	201	37	2	24	35	1.69
36583949--36583979	13	2.3	14	94	5	55	22	0	0	77	0.77
36587252--36587293	18	2.3	19	79	4	50	35	0	2	61	1.09
36588269--36588318	15	3.3	15	72	10	57	52	2	10	36	1.47
36588261--36588322	30	2.1	30	100	0	124	45	3	14	37	1.61
36589853--36589892	13	3.0	13	85	7	53	37	5	0	57	1.21
36604637--36604839	29	6.9	29	79	8	196	33	2	24	39	1.71
36604637--36604839	59	3.4	58	82	7	232	33	2	24	39	1.71
36604612--36604829	88	2.5	88	81	8	232	33	2	24	39	1.70
36606106--36606136	13	2.4	13	94	0	53	70	0	3	25	1.02
36606867--36606900	11	3.0	11	86	4	50	52	2	0	44	1.16
36606870--36606918	17	2.8	18	84	6	66	53	4	2	40	1.32
36606870--36606918	23	2.1	23	85	7	64	53	4	2	40	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36606868--36606918	6	8.8	6	75	16	54	50	3	1	43	1.31
36607175--36607494	92	3.5	92	95	0	550	33	19	14	33	1.91
36608942--36608989	6	7.5	6	93	4	60	2	14	0	83	0.74
36608947--36608990	7	6.6	7	97	2	74	0	13	0	86	0.57
36614494--36614691	59	3.4	57	77	6	191	35	7	27	29	1.84
36614768--36614868	50	2.0	50	100	0	202	29	7	30	31	1.86
36614830--36614953	29	4.2	29	83	12	137	33	7	25	34	1.83
36614830--36614953	30	4.2	29	84	8	135	33	7	25	34	1.83
36616224--36616263	3	12.7	3	84	10	53	67	0	5	27	1.11
36616902--36616958	11	5.1	11	82	4	69	57	1	1	38	1.19
36616886--36616954	17	4.1	16	80	9	66	53	2	2	40	1.31
36616904--36616960	23	2.5	23	82	2	71	57	1	1	38	1.19
36619085--36619120	17	2.1	18	89	5	56	75	2	8	13	1.15
36620270--36620319	22	2.3	22	83	13	59	48	2	0	50	1.12
36620216--36620372	75	2.1	75	83	9	196	50	1	1	45	1.20
36624205--36624502	30	9.9	30	83	0	317	37	2	20	39	1.67
36624199--36624502	90	3.4	88	85	6	371	36	2	21	39	1.67
36624868--36624929	19	3.4	18	75	14	56	45	3	0	51	1.17
36624932--36624961	15	2.0	15	93	0	51	36	0	3	60	1.14
36625395--36625433	20	2.0	20	85	10	53	15	12	48	23	1.79
36625629--36625712	6	14.3	6	72	18	61	55	0	3	40	1.17
36625629--36625704	17	4.6	17	77	11	86	55	0	3	40	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36625627--36625685	31	1.9	31	96	0	109	52	0	6	40	1.28
36625632--36625731	29	3.4	28	81	5	83	56	2	3	39	1.26
36625644--36625726	23	3.7	22	77	13	73	54	1	3	40	1.26
36626093--36627318	68	17.9	68	93	1	2015	30	20	14	33	1.93
36626093--36627318	273	4.5	272	94	1	2085	30	20	14	33	1.93
36628171--36628201	16	1.9	16	100	0	62	0	0	9	90	0.46
36638903--36639186	30	9.4	30	76	9	229	37	1	21	39	1.64
36638918--36639166	60	4.2	60	94	1	419	36	1	21	40	1.63
36640295--36640356	19	3.4	18	75	14	56	45	3	0	51	1.17
36640822--36640860	20	2.0	20	85	10	53	15	12	48	23	1.79
36641056--36641139	6	14.3	6	72	18	61	57	0	2	40	1.12
36641056--36641131	17	4.6	17	80	11	95	56	0	2	40	1.13
36641054--36641112	31	1.9	31	96	0	109	54	0	5	40	1.23
36641059--36641153	11	8.5	11	73	15	70	55	1	2	41	1.18
36641059--36641158	31	3.4	28	82	8	85	57	2	2	39	1.22
36641071--36641153	23	3.8	21	78	13	87	55	1	2	40	1.21
36647306--36647358	17	3.2	17	76	15	58	35	0	7	56	1.28
36649196--36649446	30	8.6	29	76	13	183	35	24	3	36	1.72
36649187--36649446	59	4.4	59	80	5	269	35	25	3	35	1.73
36649196--36649469	29	9.4	28	75	12	119	35	24	4	35	1.75
36649224--36649503	29	9.6	29	75	13	109	34	25	5	35	1.79
36662945--36663026	40	2.0	40	85	0	110	45	3	3	47	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36663456--36663514	29	2.0	29	90	6	93	40	28	1	28	1.66
36663453--36663512	7	8.4	7	75	10	50	43	28	1	26	1.65
36663453--36663513	22	2.9	22	76	11	65	42	27	1	27	1.65
36663578--36663628	26	1.9	27	88	4	77	45	35	3	15	1.65
36663728--36663761	18	1.9	18	88	5	52	50	0	0	50	1.00
36667296--36667326	10	2.9	11	90	9	55	29	9	0	61	1.28
36667711--36667878	84	2.0	84	96	0	309	11	32	6	49	1.65
36668933--36669128	39	5.0	39	77	1	194	37	22	15	24	1.93
36668939--36669121	78	2.3	79	83	2	244	37	21	15	25	1.93
36668939--36669154	79	2.8	78	82	2	254	37	22	15	25	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163