genome.fa.s8.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  148  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40339802--40339870	32	2.2	32	84	5	86	24	11	17	46	1.81
40349342--40349366	7	3.6	7	100	0	50	32	12	12	44	1.78
40360115--40360173	27	2.1	29	84	6	77	38	1	3	55	1.26
40370670--40370694	9	2.8	9	100	0	50	68	12	12	8	1.40
40377115--40377166	2	26.0	2	96	0	95	1	50	0	48	1.12
40383716--40383766	15	3.3	15	78	13	50	50	29	7	11	1.67
40393050--40393080	14	2.2	14	100	0	62	51	12	12	22	1.74
40393942--40394128	52	3.6	52	89	1	277	22	14	26	36	1.93
40393992--40394073	26	3.2	26	61	19	62	21	15	29	32	1.95
40398585--40398653	24	2.9	23	82	8	75	52	1	0	46	1.09
40400761--40400927	82	2.0	82	95	2	300	25	9	25	39	1.86
40403910--40403959	26	2.0	26	81	11	61	52	2	0	46	1.12
40428769--40428817	23	2.2	22	82	7	62	61	0	0	38	0.96
40434396--40434435	21	1.9	21	85	10	55	20	0	40	40	1.52
40450379--40450480	50	2.0	50	98	0	195	26	9	26	37	1.87
40457271--40457334	13	4.8	13	80	1	65	17	18	18	45	1.86
40459752--40459819	2	34.0	2	96	0	127	50	1	0	48	1.10
40464550--40464648	19	4.8	22	74	18	79	6	6	20	67	1.34
40464550--40464648	22	4.8	21	75	16	82	6	6	20	67	1.34
40464541--40464671	59	2.1	63	81	9	162	7	6	19	67	1.37
40464623--40464698	23	3.3	23	76	10	84	6	3	18	71	1.24
40466558--40466617	28	2.1	28	84	6	77	31	5	3	60	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40482311--40482360	17	2.9	18	78	21	63	48	0	6	46	1.27
40482313--40482371	8	7.1	8	73	19	50	45	0	5	49	1.24
40482324--40482357	15	2.1	17	89	10	54	44	0	5	50	1.26
40504414--40504569	60	2.6	59	79	8	136	40	14	4	41	1.66
40511971--40512004	2	17.0	2	100	0	68	0	0	50	50	1.00
40521058--40521085	3	9.3	3	100	0	56	64	0	0	35	0.94
40524618--40524744	23	5.5	22	79	9	123	43	22	22	11	1.85
40527181--40527239	31	1.9	31	85	0	82	38	10	5	45	1.60
40549026--40549131	52	2.0	53	83	5	135	28	22	9	39	1.85
40549170--40549223	19	2.9	19	89	8	76	46	3	9	40	1.54
40549433--40549507	13	5.5	13	71	12	51	60	4	0	36	1.16
40549444--40549528	42	2.0	44	88	6	131	54	4	0	41	1.21
40555358--40555481	60	2.1	59	82	5	146	41	10	8	39	1.69
40556936--40557046	52	2.1	52	80	3	125	38	2	10	47	1.53
40558971--40559012	19	2.3	19	83	4	59	61	4	0	33	1.17
40561288--40561312	6	4.2	6	100	0	50	80	0	0	20	0.72
40564394--40564419	12	2.2	12	100	0	52	69	7	0	23	1.14
40568342--40568370	15	1.9	15	100	0	58	24	0	0	75	0.80
40568338--40568372	15	2.3	16	85	14	56	22	0	0	77	0.78
40580237--40580310	38	2.0	38	89	2	114	35	5	27	32	1.79
40580274--40580454	59	3.0	58	82	9	222	33	3	30	32	1.76
40580361--40580454	29	3.2	30	74	7	102	35	2	27	35	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40582411--40582447	6	6.3	6	87	6	58	54	0	0	45	1.00
40582414--40582451	17	2.3	16	95	4	67	57	0	0	42	0.98
40582411--40582479	27	2.4	28	80	9	77	57	2	0	39	1.13
40586819--40586872	23	2.3	23	93	0	90	38	16	9	35	1.81
40595045--40595085	20	2.0	20	90	0	64	36	2	2	58	1.24
40595142--40595184	19	2.3	19	80	11	54	37	0	0	62	0.95
40597491--40597584	46	2.0	47	95	4	172	35	19	17	28	1.94
40600669--40600769	38	2.6	40	71	10	100	21	19	28	29	1.98
40602482--40602528	22	2.2	22	88	3	69	17	19	12	51	1.77
40602490--40602541	21	2.4	22	93	3	88	19	15	17	48	1.82
40602746--40602841	45	2.1	45	84	3	122	37	5	15	41	1.70
40611278--40611328	21	2.4	22	87	9	70	70	1	0	27	0.98
40611280--40611328	22	2.2	22	85	7	64	73	2	0	24	0.94
40621670--40621730	3	20.3	3	93	0	104	29	0	3	67	1.07
40632084--40632114	2	15.5	2	100	0	62	0	48	0	51	1.00
40641587--40641618	14	2.3	14	100	0	64	50	6	0	43	1.27
40654498--40654544	3	15.7	3	100	0	94	68	0	0	31	0.90
40656294--40656356	10	6.5	10	76	7	58	63	1	3	31	1.19
40656202--40656396	9	21.1	9	66	19	82	61	3	3	31	1.31
40656361--40656450	41	2.2	41	82	7	103	54	2	3	40	1.29
40657450--40657499	10	5.0	10	78	7	57	66	0	2	32	1.03
40666128--40666155	4	7.0	4	100	0	56	50	25	25	0	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40668686--40668718	16	2.0	17	88	5	50	51	0	0	48	1.00
40668793--40668847	29	1.9	27	82	10	65	50	9	0	40	1.34
40669898--40669978	29	2.7	29	81	9	92	46	14	7	30	1.72
40671504--40671544	18	2.2	19	87	12	59	65	9	2	21	1.34
40671553--40671595	22	2.0	22	90	0	68	53	6	16	23	1.67
40673526--40673595	25	2.8	25	74	22	67	60	0	2	37	1.12
40673537--40673598	32	1.9	32	84	12	83	62	0	1	35	1.05
40673542--40673589	25	2.0	25	88	12	73	62	0	2	35	1.07
40682154--40682234	32	2.6	32	84	2	101	43	7	18	30	1.78
40682175--40682243	32	2.2	32	87	10	97	46	7	20	26	1.76
40684039--40684228	21	9.6	20	73	16	123	47	0	52	0	1.04
40684079--40684228	3	50.0	3	75	7	99	46	0	54	0	1.00
40684040--40684221	15	12.1	15	67	17	85	48	0	51	0	1.04
40684037--40684228	24	8.2	24	77	11	157	47	0	52	0	1.04
40684037--40684228	18	10.8	18	72	7	151	47	0	52	0	1.04
40686996--40687063	34	2.0	33	83	11	84	36	0	1	61	1.05
40693460--40693505	24	1.9	24	86	8	67	56	4	0	39	1.19
40693691--40693766	38	2.0	37	82	12	93	56	0	2	40	1.13
40711187--40711244	21	2.8	21	89	5	82	36	24	10	29	1.88
40711188--40711256	21	3.3	21	83	0	66	33	28	8	28	1.87
40716077--40716200	23	5.4	23	81	7	101	12	21	20	45	1.84
40716072--40716195	48	2.7	46	80	7	144	12	21	21	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40723286--40723408	23	5.3	23	83	5	113	11	24	21	43	1.85
40723288--40723408	46	2.6	47	82	5	138	11	23	21	42	1.85
40723319--40723458	69	2.0	66	84	10	174	13	22	20	43	1.86
40750355--40750394	15	2.6	16	80	4	55	70	0	0	30	0.88
40753160--40753198	5	7.8	5	94	0	51	10	0	43	46	1.37
40761677--40761718	20	2.1	20	90	0	66	64	0	26	9	1.24
40762124--40762179	26	2.2	25	84	9	69	23	8	0	67	1.18
40768886--40768952	9	7.2	9	76	20	59	32	1	1	64	1.12
40770084--40770123	16	2.4	16	87	4	53	2	35	0	62	1.09
40799911--40799950	21	2.0	21	85	5	55	65	0	0	35	0.93
40813615--40813653	19	2.1	18	85	4	51	51	2	0	46	1.14
40814156--40814182	8	3.4	8	100	0	54	59	11	0	29	1.32
40816765--40816824	29	2.0	32	83	9	81	46	0	5	48	1.24
40816763--40816832	16	4.4	16	72	18	58	50	0	4	45	1.21
40818482--40818540	31	1.9	31	93	6	102	27	13	27	32	1.94
40822823--40822978	61	2.6	61	77	14	137	50	8	11	28	1.69
40828609--40828644	2	18.0	2	100	0	72	50	0	0	50	1.00
40833917--40833959	19	2.1	20	83	12	52	53	0	13	32	1.41
40834913--40834959	17	2.7	17	90	3	67	38	8	23	29	1.84
40835069--40835142	29	2.6	29	91	0	112	24	24	21	29	1.99
40837821--40837845	5	5.0	5	100	0	50	80	0	0	20	0.72
40838674--40838710	18	2.1	17	95	5	65	59	8	0	32	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40838877--40839047	58	2.9	59	81	7	197	24	14	10	50	1.73
40838964--40839067	29	3.6	29	75	14	106	26	14	11	47	1.78
40838877--40839064	59	3.2	59	80	8	206	24	14	11	50	1.75
40844408--40844433	8	3.2	8	100	0	52	23	15	0	61	1.33
40844502--40844535	12	3.0	12	91	8	54	70	0	0	29	0.87
40846884--40846916	17	2.0	17	88	5	50	57	12	27	3	1.49
40848577--40848613	17	2.2	17	90	0	56	43	8	0	48	1.32
40850326--40850516	59	3.2	59	85	0	256	35	3	28	31	1.75
40850403--40850726	88	3.7	86	73	19	271	34	4	29	31	1.77
40850391--40850663	147	1.9	147	92	0	456	34	4	28	31	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163