genome.fa.s8.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  131  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35823976--35824178	59	3.5	58	80	8	223	33	24	6	34	1.82
35823964--35824252	117	2.5	116	76	10	261	33	24	5	36	1.79
35825731--35825800	6	12.0	6	83	6	90	55	1	0	42	1.08
35825733--35825810	23	3.4	23	87	5	104	57	2	0	39	1.12
35825712--35825794	17	4.8	17	85	4	112	55	1	0	43	1.07
35826357--35826499	36	3.9	36	87	4	162	23	18	33	24	1.97
35826434--35826560	39	3.3	38	81	4	128	27	24	26	21	1.99
35826805--35827518	49	14.5	50	69	13	214	18	25	17	38	1.93
35826838--35827490	98	6.6	99	82	5	788	18	25	17	38	1.92
35826861--35827490	197	3.2	196	89	1	947	17	25	17	38	1.92
35829394--35829463	6	12.0	6	80	6	72	54	2	0	42	1.15
35829395--35829473	12	6.8	12	75	12	58	55	3	0	40	1.18
35829375--35829491	17	6.4	17	73	16	92	54	3	0	41	1.17
35829408--35829463	23	2.4	23	90	0	85	55	3	0	41	1.17
35829408--35829491	11	7.4	11	74	11	62	55	4	0	39	1.21
35831152--35831222	17	4.2	17	85	0	97	40	2	2	53	1.30
35831126--35831222	51	1.9	51	80	4	115	39	4	6	50	1.47
35831146--35831212	34	2.0	34	90	0	107	34	2	5	56	1.39
35831937--35831968	16	2.0	16	93	0	55	59	0	18	21	1.38
35832866--35833353	29	16.7	28	64	20	132	34	27	4	34	1.77
35832919--35833406	59	8.3	59	80	5	440	33	26	5	34	1.79
35832895--35833406	117	4.4	118	83	5	549	33	26	4	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35832895--35833406	176	2.9	174	83	5	595	33	26	4	34	1.78
35833394--35833451	28	2.2	26	84	6	71	32	25	10	31	1.89
35834684--35834740	29	2.0	29	96	0	105	36	28	12	22	1.90
35836494--35836625	29	4.5	29	74	12	117	34	3	26	35	1.72
35836476--35836625	58	2.6	58	77	10	146	34	2	27	36	1.71
35836600--35836766	60	2.8	60	78	5	176	37	2	21	37	1.69
35836583--35836775	90	2.1	90	85	7	250	37	2	20	39	1.67
35836583--35836778	30	6.5	30	74	9	141	37	2	20	39	1.66
35836446--35836777	60	5.6	56	70	11	173	35	3	23	37	1.71
35837448--35837493	11	3.9	12	85	8	51	10	15	0	73	1.08
35837447--35837493	23	2.0	24	88	12	71	10	17	0	72	1.12
35837447--35837489	21	2.0	23	86	9	63	9	18	0	72	1.11
35838484--35838530	17	2.8	17	93	0	76	59	2	0	38	1.09
35838990--35839562	99	5.8	99	84	1	648	15	32	18	34	1.92
35839004--35839590	148	4.0	148	76	4	414	15	32	17	34	1.92
35839182--35839620	49	8.9	48	70	7	209	15	32	17	34	1.92
35840314--35840392	40	2.0	41	84	2	106	13	25	15	45	1.83
35848166--35848386	30	7.5	29	78	8	171	34	3	23	38	1.71
35848166--35848385	60	3.7	58	78	8	203	35	3	24	37	1.71
35849061--35849111	23	2.1	25	89	7	79	9	15	0	74	1.06
35849061--35849111	12	4.2	12	82	7	59	9	15	0	74	1.06
35849051--35849107	22	2.6	22	81	8	71	8	19	0	71	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35850384--35850444	17	3.6	17	88	0	77	60	1	3	34	1.23
35850610--35850654	14	2.9	15	87	9	56	22	4	0	73	1.01
35857490--35857570	21	3.9	21	72	13	60	25	16	11	46	1.79
35864319--35864742	58	7.2	58	84	4	514	35	2	28	33	1.72
35864312--35864742	116	3.7	116	86	5	591	35	3	28	32	1.74
35864409--35864742	30	11.5	29	63	12	114	35	3	28	32	1.74
35865844--35865898	9	6.4	8	86	12	58	34	1	3	60	1.25
35866561--35866655	6	17.0	6	72	18	80	54	1	1	43	1.14
35866561--35866650	17	5.8	16	72	17	73	54	1	1	43	1.14
35866563--35866651	27	3.3	27	84	4	108	55	1	1	42	1.14
35866580--35866666	28	3.1	28	80	4	79	59	2	1	36	1.17
35866795--35866827	17	2.0	17	94	5	59	66	0	0	33	0.92
35866954--35867213	128	2.0	128	99	0	511	51	8	8	31	1.63
35868055--35868097	18	2.2	20	84	8	54	67	0	4	27	1.10
35870646--35870690	17	2.7	16	86	13	56	66	4	0	28	1.11
35876995--35877064	29	2.3	29	80	4	77	34	8	15	41	1.78
35877016--35877074	29	2.0	30	83	3	75	30	6	15	47	1.71
35891036--35891079	20	2.2	20	84	8	54	59	4	0	36	1.18
35907493--35907563	31	2.2	32	87	2	99	57	7	8	26	1.54
35907421--35907587	87	1.9	85	80	7	194	51	11	9	27	1.69
35907538--35907584	25	2.0	23	83	8	58	57	6	4	31	1.43
35907604--35907646	21	1.9	23	86	13	63	62	6	0	30	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35918539--35918603	31	2.0	33	88	8	98	18	36	0	44	1.50
35920830--35920896	30	2.2	31	84	10	93	38	1	19	40	1.61
35920883--35921039	58	2.7	58	81	7	174	35	1	26	37	1.65
35920990--35921048	31	1.9	31	89	0	91	38	3	27	30	1.73
35920904--35921188	29	9.5	30	72	12	133	36	4	24	34	1.75
35920913--35921159	60	4.2	60	73	13	197	37	4	24	34	1.74
35921111--35921176	30	2.2	30	86	2	87	36	6	25	31	1.81
35921021--35921188	90	1.9	90	83	6	223	38	5	23	32	1.79
35923029--35923065	18	2.1	18	89	0	56	24	27	0	48	1.51
35923828--35923880	2	26.5	2	96	0	79	49	5	0	45	1.26
35925538--35925584	18	2.7	18	90	9	80	59	0	0	40	0.97
35929491--35929522	7	4.4	7	92	7	55	0	12	0	87	0.54
35929491--35929522	15	2.1	15	100	0	64	0	12	0	87	0.54
35933406--35933437	7	4.4	7	92	7	55	0	12	0	87	0.54
35933406--35933437	15	2.1	15	100	0	64	0	12	0	87	0.54
35937321--35937352	7	4.4	7	92	7	55	0	12	0	87	0.54
35937321--35937352	15	2.1	15	100	0	64	0	12	0	87	0.54
35941236--35941267	7	4.4	7	92	7	55	0	12	0	87	0.54
35941236--35941267	15	2.1	15	100	0	64	0	12	0	87	0.54
35955364--35955412	14	3.5	13	86	8	62	4	18	12	65	1.41
35956188--35956808	38	16.1	38	74	9	418	27	17	22	32	1.96
35956230--35956709	77	6.2	77	87	1	613	27	18	22	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35956215--35956709	231	2.1	232	86	4	683	27	17	22	32	1.97
35957013--35957855	99	8.6	99	81	3	761	17	31	16	33	1.93
35957064--35957855	50	16.3	49	75	7	371	17	31	16	34	1.93
35957014--35957870	297	2.9	293	81	4	939	17	31	16	33	1.93
35957545--35957855	140	2.2	142	82	3	394	15	34	17	32	1.91
35958772--35958820	14	3.5	13	83	8	62	0	16	16	67	1.24
35958993--35959050	23	2.7	21	81	7	80	18	1	32	46	1.60
35960304--35960585	41	6.9	40	76	8	203	32	21	25	20	1.98
35960329--35960564	82	2.9	82	79	4	246	33	19	27	19	1.96
35972482--35972546	25	2.5	25	74	18	62	36	3	1	58	1.23
35972495--35972539	21	2.1	21	84	8	56	35	2	2	60	1.22
35972566--35972602	13	2.8	13	83	0	56	67	0	2	29	1.04
35973519--35973826	30	10.3	29	75	11	90	35	22	4	37	1.74
35973541--35973868	89	3.7	90	78	11	263	35	21	3	39	1.72
35973541--35973931	60	6.7	59	73	11	234	34	21	3	39	1.72
35973720--35973931	113	1.9	113	83	7	279	33	23	2	40	1.69
35973844--35973926	29	2.8	29	80	12	96	33	18	3	44	1.67
35981632--35981802	49	3.5	49	83	0	225	38	14	22	24	1.92
35981730--35982762	210	4.9	210	87	0	1397	36	16	22	24	1.94
35983114--35983147	14	2.3	15	85	5	52	50	20	8	20	1.75
35983594--35983647	21	2.5	22	76	11	58	35	3	1	59	1.26
35984918--35985619	201	3.5	201	96	0	1273	36	23	22	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35986051--35986112	17	3.6	17	73	16	65	45	1	4	48	1.33
35987977--35988235	59	4.4	59	87	5	362	33	30	2	33	1.71
35987977--35988234	117	2.2	119	89	2	387	33	30	2	33	1.71
35988107--35988199	29	3.2	29	72	14	100	32	27	1	38	1.64
35989709--35990056	29	11.8	30	77	8	277	35	22	2	39	1.66
35989669--35990056	59	6.6	59	77	10	287	35	22	2	39	1.67
35993941--35994080	50	2.8	50	82	4	158	35	19	23	21	1.96
35994035--35994122	43	2.0	43	89	4	133	35	21	21	21	1.96
35994169--35994296	39	3.3	39	71	14	109	33	23	14	28	1.93
35995646--35995709	28	2.3	28	78	5	67	54	3	14	28	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163