genome.fa.s8.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  155  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43259785--43259814	2	15.0	2	100	0	60	0	50	0	50	1.00
43261058--43261104	23	2.0	23	88	8	69	34	17	2	46	1.59
43263584--43263620	19	1.9	20	88	5	58	54	5	5	35	1.47
43264238--43264276	21	2.0	21	85	10	55	28	5	5	61	1.39
43270050--43270092	22	2.0	22	90	4	70	51	0	0	48	1.00
43286272--43286341	29	2.4	29	88	2	106	42	22	10	24	1.84
43298843--43298871	4	7.5	4	92	7	51	0	20	0	79	0.74
43302440--43302597	82	1.9	82	93	0	271	29	21	18	31	1.97
43308384--43308441	5	11.0	5	83	9	71	20	3	1	74	1.06
43308384--43308441	11	5.5	11	81	2	66	20	3	1	74	1.06
43309019--43309193	92	1.9	91	84	5	233	38	2	10	48	1.50
43309798--43309840	22	2.0	23	86	9	63	32	0	2	65	1.06
43309936--43309969	18	1.9	17	94	5	59	61	5	0	32	1.20
43314682--43314895	106	2.0	106	96	0	392	36	29	10	22	1.88
43319032--43319073	3	14.3	3	95	5	77	35	0	0	64	0.94
43320376--43320412	2	18.5	2	100	0	74	51	0	48	0	1.00
43321663--43321740	33	2.4	33	97	0	147	26	5	17	50	1.67
43325065--43325105	5	8.2	5	100	0	82	19	41	0	39	1.52
43326812--43326860	21	2.3	21	85	0	62	30	28	24	16	1.96
43326931--43326976	21	2.1	22	92	4	76	21	0	34	43	1.53
43331659--43331715	20	2.8	20	94	0	105	49	33	0	17	1.47
43331757--43331808	21	2.4	22	93	3	88	19	28	25	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43331750--43331808	11	5.5	11	81	4	75	18	28	25	27	1.98
43331798--43331862	20	3.2	20	91	0	103	18	20	23	38	1.93
43331798--43331895	7	14.6	7	67	8	51	17	22	24	35	1.95
43331798--43331898	20	5.1	19	72	9	85	16	21	23	37	1.93
43335687--43335728	3	14.3	3	95	5	77	69	0	0	30	0.89
43336777--43336816	14	2.9	14	96	0	71	35	22	27	15	1.94
43336777--43336816	21	1.9	21	94	0	71	35	22	27	15	1.94
43336803--43336850	21	2.3	21	89	7	71	33	25	22	18	1.97
43336777--43336816	7	5.7	7	90	0	62	35	22	27	15	1.94
43336923--43336967	21	2.1	22	91	4	74	22	0	33	44	1.53
43346795--43346835	16	2.5	17	84	4	57	60	0	4	34	1.18
43347723--43347789	29	2.2	32	84	7	86	41	1	11	44	1.50
43363267--43363415	80	1.9	79	85	1	208	38	17	17	26	1.92
43375324--43375468	67	2.2	65	88	9	224	40	0	2	55	1.19
43375349--43375482	67	2.1	67	88	5	204	47	0	2	50	1.13
43379493--43379518	13	2.0	13	100	0	52	69	0	23	7	1.14
43380479--43380537	6	9.0	6	80	12	55	79	1	18	0	0.81
43380459--43380530	8	8.6	8	72	17	58	80	1	13	4	0.92
43380477--43380536	14	4.3	15	76	18	58	81	1	16	0	0.77
43380480--43380537	20	2.8	20	85	10	82	79	1	18	0	0.82
43381462--43381619	50	3.2	50	82	3	192	34	17	25	22	1.96
43381482--43381637	50	3.1	50	75	7	145	37	16	23	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43381692--43382349	80	8.2	80	93	1	1088	32	24	18	24	1.97
43382870--43383026	67	2.4	64	88	8	228	39	0	2	57	1.17
43387096--43387264	39	4.3	39	85	1	196	43	17	14	24	1.86
43387118--43387286	39	4.3	39	82	5	162	42	17	15	24	1.88
43387118--43387286	78	2.2	78	81	6	191	42	17	15	24	1.88
43391512--43391569	19	3.0	20	76	19	61	44	1	5	48	1.35
43400303--43400359	30	1.9	30	88	0	87	66	0	7	26	1.17
43404492--43404551	25	2.3	26	85	8	86	46	15	5	33	1.67
43411516--43411592	35	2.2	35	84	6	95	32	15	0	51	1.44
43418593--43418641	25	2.0	25	88	8	73	51	6	4	38	1.46
43418801--43418830	2	15.0	2	100	0	60	0	50	0	50	1.00
43423516--43423561	18	2.4	20	83	16	62	50	2	2	45	1.26
43442330--43442370	16	2.5	17	80	11	50	43	7	0	48	1.30
43455185--43455251	34	2.0	34	87	0	98	20	32	2	43	1.67
43456468--43456513	23	2.0	22	83	8	56	56	4	4	34	1.39
43460292--43460317	6	4.3	6	100	0	52	46	0	34	19	1.50
43470119--43470168	4	12.5	4	95	0	91	52	22	0	26	1.48
43471255--43471296	20	2.0	21	86	4	59	61	2	0	35	1.09
43472986--43473035	22	2.3	21	83	12	66	34	0	0	66	0.92
43473001--43473044	22	2.1	22	83	8	56	43	0	0	56	0.99
43473001--43473046	21	2.1	22	84	4	58	43	0	0	56	0.99
43473305--43473361	22	2.6	23	83	5	73	70	0	3	26	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43473328--43473383	22	2.7	21	83	5	60	67	0	0	32	0.91
43474671--43474705	16	2.2	16	94	0	61	34	0	0	65	0.93
43490892--43490918	14	1.9	14	100	0	54	14	0	48	37	1.45
43496084--43496116	16	2.0	17	88	5	50	57	6	0	36	1.23
43512973--43513040	32	2.1	32	86	0	91	32	10	11	45	1.74
43516543--43516587	18	2.5	18	77	0	54	60	2	0	37	1.09
43517068--43517097	15	2.0	15	100	0	60	53	13	13	20	1.72
43518664--43518724	23	2.6	24	79	7	72	27	16	18	37	1.92
43518664--43518721	12	5.0	12	78	4	66	27	17	17	37	1.92
43531389--43531468	34	2.5	34	82	8	96	65	0	10	25	1.24
43531378--43531468	30	2.9	30	80	6	92	63	1	8	26	1.30
43531379--43531466	32	2.8	30	73	14	72	63	1	9	26	1.31
43537440--43537600	23	6.9	23	82	6	157	40	22	24	11	1.87
43542401--43542426	2	13.0	2	100	0	52	50	0	0	50	1.00
43542878--43543044	77	2.2	77	97	0	316	28	17	21	32	1.96
43544288--43544312	2	12.5	2	100	0	50	48	0	0	52	1.00
43555811--43555879	30	2.3	31	80	14	74	5	17	2	73	1.15
43558147--43558194	25	2.0	24	84	8	62	31	2	4	62	1.26
43560692--43560720	2	14.5	2	100	0	58	48	0	0	51	1.00
43560890--43560936	22	2.1	22	100	0	94	40	17	21	21	1.91
43561621--43561688	26	2.6	26	76	4	66	50	7	2	39	1.46
43563286--43563328	18	2.3	18	88	4	68	16	27	34	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43569570--43569639	3	23.3	3	94	0	122	1	0	64	34	1.03
43579858--43579918	26	2.3	27	81	16	65	62	1	1	34	1.15
43579874--43579922	20	2.8	17	84	12	55	61	0	2	36	1.08
43580446--43580672	113	2.0	113	94	0	400	30	20	7	41	1.79
43583400--43583434	6	5.5	6	87	12	52	0	65	0	34	0.93
43583400--43583428	14	2.1	14	100	0	58	0	65	0	34	0.93
43592108--43592167	32	1.9	30	86	6	84	55	1	3	40	1.27
43592711--43592744	17	2.0	17	94	0	59	55	0	0	44	0.99
43593838--43593906	30	2.3	30	80	16	72	49	2	0	47	1.16
43594134--43594220	37	2.4	36	86	7	122	18	27	12	41	1.87
43594506--43594576	29	2.3	30	88	9	99	54	0	0	45	0.99
43594506--43594621	33	3.7	32	74	14	105	55	0	0	43	1.05
43597335--43597425	32	2.8	32	81	1	110	29	7	6	56	1.53
43597823--43597848	13	2.0	13	100	0	52	53	7	0	38	1.30
43601811--43601835	1	25.0	1	100	0	50	0	100	0	0	0.00
43602174--43602214	18	2.3	19	80	16	52	26	2	0	70	0.99
43607723--43607756	17	2.0	17	88	0	50	58	2	8	29	1.43
43608796--43608826	2	15.5	2	100	0	62	48	0	51	0	1.00
43615868--43615903	12	3.0	12	91	0	54	22	19	25	33	1.97
43616133--43616178	14	3.2	15	84	9	60	36	0	0	63	0.95
43616148--43616182	15	2.3	16	85	14	56	34	0	0	65	0.93
43616219--43616243	8	3.1	8	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43617028--43617065	17	2.1	19	90	9	62	52	2	10	34	1.50
43617734--43617773	17	2.4	17	87	4	55	45	0	0	55	0.99
43617734--43617778	17	2.7	16	86	6	54	40	2	0	57	1.11
43617734--43617778	8	5.4	8	84	7	54	40	2	0	57	1.11
43624682--43624714	6	5.5	6	100	0	66	33	0	66	0	0.92
43625729--43625755	12	2.2	12	100	0	54	51	0	0	48	1.00
43627825--43627868	21	2.1	21	91	0	70	27	9	6	56	1.55
43628289--43628354	31	2.2	30	84	10	82	46	1	3	48	1.26
43628416--43628473	29	2.0	29	100	0	116	41	13	0	44	1.44
43663157--43663183	2	13.5	2	100	0	54	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163