genome.fa.s8.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  44  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11049409--11049541	55	2.4	56	86	3	173	29	9	15	46	1.76
11050837--11050917	34	2.4	34	82	0	117	46	19	9	23	1.80
11056181--11056311	55	2.4	55	88	1	183	29	7	14	48	1.72
11057610--11057691	34	2.4	34	79	0	101	47	18	10	23	1.80
11060138--11060267	29	4.4	30	86	9	171	36	24	3	36	1.71
11060138--11060267	59	2.2	59	84	10	169	36	24	3	36	1.71
11060224--11060559	58	5.8	58	80	4	336	30	27	5	36	1.81
11060251--11060389	29	4.8	29	71	14	106	31	27	4	36	1.76
11060265--11060531	29	9.1	29	68	19	108	29	26	5	37	1.80
11060224--11060559	175	1.9	175	85	1	458	30	27	5	36	1.81
11064154--11064200	19	2.4	20	82	3	60	78	8	2	10	1.04
11064154--11064200	10	4.8	10	78	5	60	78	8	2	10	1.04
11065046--11065114	22	3.1	21	79	8	75	78	4	15	1	0.98
11066367--11066589	101	2.2	100	82	5	263	40	20	25	14	1.90
11066641--11066791	40	3.5	40	70	25	126	32	11	16	39	1.84
11066588--11067313	92	7.8	92	87	6	705	33	16	16	32	1.92
11066830--11067317	183	2.7	184	90	4	738	33	19	17	29	1.95
11066830--11067312	92	5.3	92	90	2	733	33	19	17	30	1.95
11067241--11067371	49	2.7	49	89	5	203	35	19	17	26	1.94
11067655--11067690	11	3.2	11	88	4	54	38	2	0	58	1.13
11072091--11072117	2	13.5	2	100	0	54	48	0	0	51	1.00
11074586--11074718	55	2.4	56	87	3	182	29	9	14	47	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11076014--11076095	34	2.4	34	81	0	110	46	19	10	23	1.81
11080541--11080629	46	2.0	45	91	6	144	39	26	10	23	1.87
11083666--11083798	55	2.4	56	87	3	182	29	9	14	47	1.74
11086331--11086444	30	3.8	30	83	6	151	35	26	3	35	1.74
11086513--11086652	63	2.3	59	83	10	176	31	31	4	32	1.77
11086524--11086751	60	3.8	58	78	10	185	29	27	5	37	1.79
11090378--11090426	10	4.8	10	79	2	53	81	6	2	10	0.94
11091269--11091338	22	3.1	21	76	11	68	78	4	15	1	0.98
11091271--11091322	25	2.2	25	86	6	72	82	5	9	1	0.90
11091271--11091333	26	2.4	25	82	12	74	82	4	11	1	0.88
11092594--11092816	101	2.2	100	83	5	272	40	20	25	13	1.89
11092654--11092811	51	3.1	50	69	10	115	40	19	26	13	1.88
11092868--11093150	40	6.4	41	71	22	211	33	10	16	38	1.83
11092908--11093077	53	3.5	53	69	24	172	35	10	15	38	1.83
11092814--11093117	93	3.3	93	97	0	565	34	10	16	38	1.83
11093290--11093715	40	9.5	41	62	22	126	32	20	18	28	1.96
11093191--11093764	92	6.3	92	93	1	947	32	20	17	29	1.96
11093191--11093769	275	2.1	277	93	2	990	32	19	18	29	1.96
11093692--11093823	50	2.7	49	91	3	212	35	20	17	26	1.95
11094107--11094142	11	3.2	11	88	4	54	38	2	0	58	1.13
11096045--11096154	30	3.6	30	83	3	132	36	25	1	36	1.67
11101599--11101731	55	2.4	56	87	3	182	29	9	14	47	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11103028--11103109	34	2.4	34	81	0	110	46	19	10	23	1.81
11108637--11108769	55	2.4	56	87	3	182	29	9	14	47	1.74
11110066--11110147	34	2.4	34	81	0	110	46	19	10	23	1.81
11115421--11115553	55	2.4	56	87	3	182	29	9	14	47	1.74
11116850--11116931	34	2.4	34	81	0	110	46	19	10	23	1.81
11122466--11122598	55	2.4	56	87	3	182	29	9	14	47	1.74
11123894--11123975	34	2.4	34	81	0	110	46	19	10	23	1.81
11128555--11128687	55	2.4	56	87	3	182	29	9	14	47	1.74
11132532--11132673	30	4.7	30	82	7	171	33	26	3	36	1.74
11132631--11132943	59	5.3	59	81	1	297	29	28	6	35	1.82
11132770--11132876	29	3.7	27	73	13	88	28	23	6	42	1.79
11132879--11132943	29	2.2	29	78	13	71	30	30	9	29	1.88
11132859--11132980	28	4.2	29	76	11	90	32	29	7	30	1.85
11136566--11136614	11	4.6	11	77	7	57	79	8	2	10	1.01
11137458--11137527	22	3.1	21	76	11	68	78	4	15	1	0.98
11137460--11137511	25	2.2	25	86	6	72	82	5	9	1	0.90
11137460--11137522	26	2.4	25	82	12	74	82	4	11	1	0.88
11138782--11139004	101	2.2	100	85	4	297	40	21	25	12	1.89
11138839--11138999	51	3.2	49	72	11	137	40	21	26	11	1.87
11139056--11139287	40	5.2	40	66	27	135	34	10	15	39	1.83
11139096--11139265	53	3.5	53	69	24	172	34	11	15	38	1.83
11139002--11139325	93	3.5	93	94	2	546	35	11	16	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11138999--11139913	92	9.9	92	90	4	802	33	17	17	31	1.93
11139281--11139912	92	6.8	92	92	2	948	33	19	17	29	1.95
11139438--11139863	40	9.5	41	62	22	126	32	20	18	28	1.96
11139339--11139917	275	2.1	277	93	2	990	32	19	18	29	1.96
11139840--11139971	50	2.7	49	91	3	212	35	20	17	26	1.95
11140255--11140290	11	3.2	11	88	4	54	38	2	0	58	1.13
11141678--11141733	29	1.9	28	85	7	76	57	0	41	1	1.09
11142211--11142347	30	4.5	30	83	7	161	33	26	3	36	1.74
11142211--11142519	59	5.2	60	79	9	183	31	27	4	36	1.78
11142298--11142508	59	3.6	58	86	1	305	30	29	5	34	1.79
11142298--11142553	117	2.2	117	87	2	354	29	29	5	34	1.81
11142265--11142610	28	11.9	29	71	17	175	30	29	5	34	1.81
11150109--11150240	54	2.4	54	86	5	169	47	14	9	28	1.74
11159827--11159908	34	2.4	34	81	0	110	46	19	10	23	1.81
11165436--11165568	55	2.4	56	87	3	182	29	9	14	47	1.74
11166865--11166946	34	2.4	34	81	0	110	46	19	10	23	1.81
11172467--11172599	55	2.4	56	87	3	182	29	9	14	47	1.74
11173895--11173976	34	2.4	34	81	0	110	46	19	10	23	1.81
11179502--11179634	55	2.4	56	87	3	182	29	9	14	47	1.74
11180842--11180926	34	2.4	35	76	5	91	48	18	10	22	1.79
11183911--11184043	55	2.4	56	87	3	182	29	9	14	47	1.74
11185330--11185411	34	2.4	34	81	0	110	46	19	10	23	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11188879--11189011	55	2.4	56	87	3	182	29	9	14	47	1.74
11190304--11190385	34	2.4	34	81	0	110	46	19	10	23	1.81
11197260--11197341	34	2.4	34	81	0	110	46	19	10	23	1.81
11202869--11203001	55	2.4	56	87	3	182	29	9	14	47	1.74
11204298--11204379	34	2.4	34	81	0	110	46	19	10	23	1.81
11209906--11210034	52	2.4	53	83	5	161	29	8	14	47	1.74
11211324--11211404	33	2.4	33	79	2	99	45	19	11	23	1.82
11212682--11212763	34	2.4	34	81	0	110	46	19	10	23	1.81
11218263--11218395	55	2.4	56	87	3	182	29	9	14	47	1.74
11219687--11219768	34	2.4	34	81	0	110	46	19	10	23	1.81
11227545--11227677	55	2.4	56	87	3	182	29	9	14	47	1.74
11228968--11229049	34	2.4	34	81	0	110	46	19	10	23	1.81
11234579--11234707	55	2.4	55	86	8	171	28	9	14	47	1.75
11237085--11237216	55	2.5	53	86	5	167	28	9	14	47	1.74
11237109--11237216	53	2.0	55	87	3	157	26	10	12	50	1.73
11240204--11240336	55	2.4	56	87	3	182	29	9	14	47	1.74
11241630--11241711	34	2.4	34	81	0	110	46	19	10	23	1.81
11247205--11247337	55	2.4	56	87	3	182	29	9	14	47	1.74
11248634--11248714	34	2.4	34	82	0	108	45	19	11	23	1.82
11250034--11250115	34	2.4	34	79	0	101	47	18	10	23	1.80
11255617--11255722	52	2.0	54	87	7	155	27	10	12	50	1.72
11259987--11260119	55	2.4	56	87	3	182	29	9	14	47	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11261416--11261496	34	2.4	34	82	0	108	45	19	11	23	1.82
11262820--11262901	34	2.4	34	79	0	101	47	18	10	23	1.80
11268394--11268526	55	2.4	56	87	3	182	29	9	14	47	1.74
11269824--11269905	34	2.4	34	79	0	101	47	19	9	23	1.79
11274343--11274384	7	6.0	7	78	10	50	28	0	0	71	0.86
11275123--11275158	6	6.0	6	93	0	63	16	50	13	19	1.79
11286591--11286617	14	1.9	14	100	0	54	51	14	11	22	1.73
11295985--11296032	24	2.0	24	100	0	96	50	0	4	45	1.21
11297160--11297198	20	1.9	21	94	5	71	46	25	15	12	1.81
11298808--11298840	16	2.1	16	94	0	57	36	21	0	42	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163