genome.fa.s8.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  22  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6022125--6022218	11	8.7	10	76	18	57	51	0	2	46	1.13
6022136--6022250	11	10.1	11	72	15	74	52	0	0	46	1.06
6022130--6022249	17	7.2	16	81	11	109	52	0	1	45	1.10
6022130--6022233	6	17.8	6	73	19	87	51	0	1	46	1.12
6022221--6022261	17	2.4	17	83	0	55	60	2	0	36	1.10
6024071--6024189	30	4.1	29	77	16	113	38	26	2	31	1.70
6024107--6024157	27	1.9	27	92	4	86	33	33	1	31	1.69
6024077--6024184	56	1.9	57	88	1	164	36	27	2	33	1.72
6024167--6024210	20	2.2	20	95	0	79	38	22	2	36	1.67
6025276--6025343	34	2.0	34	88	0	100	22	17	17	42	1.89
6025811--6025888	19	3.8	20	64	21	54	43	3	1	51	1.28
6026944--6027001	18	3.6	18	67	26	56	22	65	0	12	1.25
6026944--6027008	30	2.2	30	94	0	112	21	66	0	12	1.24
6026959--6027011	6	8.8	6	76	0	52	18	66	0	15	1.26
6026959--6027011	18	2.9	18	77	0	61	18	66	0	15	1.26
6027732--6027834	2	52.0	2	96	1	190	51	0	0	48	1.00
6032074--6032100	2	13.5	2	100	0	54	48	0	0	51	1.00
6034072--6034154	30	2.8	28	83	9	85	22	8	13	55	1.65
6034154--6034201	24	2.0	24	87	4	69	35	12	16	35	1.87
6037493--6037544	23	2.3	23	93	0	86	46	5	21	26	1.74
6037866--6037930	33	2.0	33	87	0	94	40	0	24	35	1.56
6038469--6038519	27	2.0	25	82	14	61	47	3	15	33	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6056537--6056570	15	2.3	15	100	0	68	26	23	20	29	1.99
6061338--6061387	25	2.0	26	88	4	75	44	8	4	44	1.52
6067249--6067288	20	2.0	20	85	9	55	30	20	15	35	1.93
6071953--6072003	26	2.0	25	88	3	75	52	7	5	33	1.54
6071953--6071996	13	3.5	13	81	3	54	59	6	2	31	1.36
6079409--6079450	16	2.6	16	96	0	75	38	33	11	16	1.86
6079423--6079508	37	2.3	37	87	0	136	39	32	16	11	1.84
6080352--6080379	2	14.0	2	100	0	56	50	0	0	50	1.00
6081347--6081400	24	2.2	24	93	0	90	25	22	22	29	1.99
6083682--6083898	73	3.0	74	82	2	233	41	30	16	11	1.83
6083684--6083898	37	5.9	37	81	2	238	41	30	16	11	1.83
6086745--6086792	19	2.5	19	82	0	69	60	10	16	12	1.58
6091667--6091800	39	3.3	40	83	7	155	6	7	17	67	1.36
6091656--6091800	20	7.2	19	81	6	146	6	6	19	66	1.38
6091779--6091879	24	4.3	24	75	5	107	7	4	17	69	1.31
6091779--6091930	12	13.2	12	77	6	93	9	5	17	67	1.37
6091803--6091886	34	2.5	35	84	7	111	9	4	16	69	1.33
6091779--6091935	67	2.3	69	80	5	158	9	5	18	66	1.38
6093902--6093935	17	1.9	17	88	5	50	20	14	5	58	1.57
6095984--6096027	13	3.3	14	75	12	56	59	2	2	36	1.23
6100284--6100329	15	3.1	15	73	17	51	28	13	8	50	1.70
6102783--6102822	3	13.3	3	100	0	80	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6102929--6102964	12	2.8	13	91	8	65	16	0	83	0	0.65
6106725--6107764	520	2.0	517	97	0	1954	32	15	15	36	1.89
6112981--6113021	15	2.7	16	85	7	50	0	24	7	68	1.15
6116495--6116532	5	7.6	5	100	0	76	0	60	0	39	0.97
6139241--6139372	72	1.9	70	87	3	192	43	9	5	42	1.59
6139538--6139613	30	2.6	29	83	8	100	61	1	1	35	1.12
6139887--6139920	11	3.2	11	91	8	61	26	0	0	73	0.83
6139887--6139921	10	3.4	10	96	4	61	28	0	0	71	0.86
6139947--6140023	28	2.9	27	77	14	79	37	0	0	62	0.96
6139946--6140007	9	6.7	9	76	12	63	40	0	0	59	0.97
6139942--6140024	18	4.6	18	77	12	82	38	0	0	61	0.96
6140890--6140947	27	2.1	27	84	9	73	46	25	1	25	1.62
6142265--6142327	24	2.6	24	84	0	81	50	7	14	26	1.70
6142720--6142764	22	2.1	22	91	4	74	73	0	0	26	0.84
6143485--6143578	6	15.8	6	69	17	63	39	2	3	55	1.28
6143498--6143577	17	4.9	17	84	9	94	37	2	2	57	1.26
6143484--6143539	28	2.0	29	89	3	87	37	1	3	57	1.27
6143519--6143577	31	1.9	31	92	0	100	38	3	1	55	1.26
6143492--6143571	11	6.9	11	72	10	52	37	2	2	57	1.26
6144415--6144445	12	2.6	12	94	0	53	48	0	0	51	1.00
6144386--6144449	15	4.4	15	73	13	53	48	0	4	46	1.23
6145548--6145743	29	6.8	28	73	12	137	33	28	3	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6145520--6145770	58	4.3	57	87	7	210	34	27	3	35	1.74
6145557--6145770	59	3.7	59	90	6	305	32	29	2	35	1.72
6145576--6145747	29	5.9	28	74	14	143	31	27	2	37	1.72
6145605--6145754	29	5.1	28	76	16	153	33	28	3	34	1.74
6145605--6145765	30	5.4	30	71	18	131	33	27	3	35	1.73
6145605--6145793	59	3.2	57	81	11	213	32	29	4	33	1.77
6145752--6145813	28	2.2	28	85	5	81	33	30	11	24	1.90
6157936--6158526	76	7.8	76	93	0	936	32	15	19	32	1.93
6158795--6158888	6	15.8	6	69	17	63	39	2	3	55	1.28
6158808--6158887	17	4.9	17	84	9	94	37	2	2	57	1.26
6158794--6158849	28	2.0	29	89	3	87	37	1	3	57	1.27
6158829--6158887	31	1.9	31	92	0	100	38	3	1	55	1.26
6158802--6158881	11	6.9	11	72	10	52	37	2	2	57	1.26
6159725--6159755	12	2.6	12	94	0	53	48	0	0	51	1.00
6160822--6160924	28	3.6	29	81	10	115	38	22	2	35	1.69
6160826--6160990	29	5.7	28	71	19	88	36	24	2	35	1.69
6160880--6161075	59	3.4	58	80	9	222	31	30	2	35	1.71
6160992--6161075	29	2.9	29	75	16	84	29	33	3	33	1.75
6160996--6161116	28	4.2	28	72	16	86	30	31	7	30	1.85
6162166--6162199	9	3.8	9	96	0	59	26	11	11	50	1.73
6166894--6166986	34	2.8	34	93	1	152	36	16	9	37	1.81
6169731--6169772	2	21.0	2	100	0	84	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6171338--6171389	26	2.0	26	88	0	77	28	11	13	46	1.78
6173619--6173684	15	4.4	15	71	3	53	45	1	0	53	1.09
6176027--6176063	12	3.1	12	84	0	56	48	32	18	0	1.49
6180968--6181027	21	2.9	20	72	18	52	41	0	6	51	1.28
6192346--6192371	11	2.4	11	100	0	52	0	7	7	84	0.77
6196310--6196339	15	2.0	15	93	0	51	40	10	26	23	1.86
6196567--6196612	20	2.3	20	82	14	51	54	0	8	36	1.32
6198984--6199144	23	6.9	23	83	6	166	40	22	25	11	1.87
6203884--6203921	3	12.7	3	100	0	76	65	0	0	34	0.93
6209806--6209891	43	2.0	43	95	0	154	27	25	4	41	1.75
6210722--6210819	50	1.9	51	85	2	135	33	13	7	45	1.70
6214020--6214078	25	2.3	25	82	8	66	35	0	1	62	1.05
6214739--6215076	166	2.0	166	94	2	599	40	14	17	27	1.88
6220888--6220961	36	2.1	36	92	0	121	39	21	16	22	1.92
6233976--6234048	25	2.9	25	87	4	103	21	49	12	16	1.78
6235772--6235996	30	7.6	29	71	14	111	38	20	2	38	1.67
6235759--6236057	60	5.0	59	79	7	214	37	23	2	36	1.68
6235803--6235996	90	2.2	91	79	10	204	37	22	2	37	1.68
6235893--6236207	58	5.4	58	80	7	307	33	26	3	36	1.72
6235893--6236199	117	2.6	117	81	8	331	34	25	2	37	1.71
6235923--6236199	29	9.4	29	68	19	121	33	25	3	37	1.72
6250208--6250667	200	2.3	200	91	0	740	36	21	22	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6250574--6250704	37	3.2	37	66	22	91	35	17	25	20	1.95
6250559--6250753	86	2.3	86	90	1	293	36	17	24	21	1.94
6250359--6250953	286	2.1	286	87	0	832	36	20	23	20	1.95
6251308--6251348	18	2.3	18	87	4	57	39	0	4	56	1.21
6251322--6251355	17	2.1	17	88	5	52	35	2	5	55	1.39
6259444--6259942	200	2.5	200	87	2	696	36	21	21	20	1.95
6260297--6260337	17	2.4	17	87	0	55	43	0	2	53	1.13
6260307--6260366	17	3.5	17	73	8	50	51	1	1	45	1.21
6260533--6260580	25	1.9	25	86	0	69	22	52	8	16	1.71
6262291--6262428	30	4.6	31	76	9	119	37	21	2	38	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163