genome.fa.s8.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  53  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13184764--13184856	47	2.0	47	95	0	168	16	26	22	34	1.95
13185917--13185947	3	10.3	3	100	0	62	32	0	0	67	0.91
13191383--13191418	10	3.7	10	92	7	65	0	19	0	80	0.71
13191887--13191932	21	2.1	22	92	4	76	43	34	0	21	1.53
13191983--13192037	10	5.4	10	84	2	74	18	29	30	21	1.97
13191981--13192037	20	2.8	20	91	2	96	19	29	29	21	1.97
13192047--13192175	13	10.2	13	76	12	135	16	24	21	37	1.93
13192049--13192172	47	2.9	40	82	15	167	16	25	22	35	1.95
13192047--13192159	27	4.5	27	77	15	134	16	25	22	35	1.95
13192065--13192157	47	2.0	47	95	0	168	16	26	22	34	1.95
13193223--13193267	3	15.3	3	95	4	83	31	0	0	68	0.89
13195310--13195354	23	2.0	23	86	4	65	37	0	4	57	1.19
13195373--13195410	15	2.3	16	86	13	51	31	2	0	65	1.06
13202511--13202535	13	1.9	13	100	0	50	16	8	12	64	1.49
13204987--13205106	30	4.0	30	72	12	93	38	22	1	37	1.64
13215938--13216063	41	3.1	41	78	7	148	44	15	24	15	1.85
13217064--13217203	75	1.9	75	83	7	185	40	14	20	24	1.90
13217206--13217487	123	2.3	123	88	0	411	42	17	18	21	1.89
13217082--13217403	171	1.9	171	86	1	457	40	15	19	24	1.90
13217329--13217421	48	1.9	48	91	0	150	40	18	20	20	1.91
13218322--13218346	11	2.3	11	100	0	50	72	0	0	28	0.86
13219140--13219319	30	6.1	30	76	10	140	36	22	5	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13219211--13219262	26	2.0	26	85	11	70	30	21	7	40	1.81
13223150--13223204	20	2.7	20	82	2	65	38	21	16	23	1.93
13227797--13227964	75	2.3	72	86	6	221	38	19	17	25	1.93
13233985--13234030	20	2.3	21	82	17	62	65	2	2	30	1.16
13242744--13242812	25	2.8	25	84	0	93	23	23	23	30	1.99
13257013--13257084	5	14.2	5	76	2	72	40	2	19	37	1.66
13276256--13276303	12	4.0	12	81	8	62	60	0	37	2	1.09
13276703--13276756	18	3.1	18	75	5	56	22	11	12	53	1.70
13286766--13286806	23	1.9	20	85	14	55	19	19	14	46	1.84
13291246--13291286	23	1.9	20	85	14	55	19	19	14	46	1.84
13295727--13295767	23	1.9	20	85	14	55	19	19	14	46	1.84
13300207--13300247	23	1.9	20	85	14	55	19	19	14	46	1.84
13304685--13304725	23	1.9	20	85	14	55	19	19	14	46	1.84
13312531--13312567	5	7.2	5	96	3	65	0	18	0	81	0.70
13318285--13318335	20	2.6	21	79	14	56	64	0	19	15	1.29
13330282--13330344	19	3.3	19	66	16	58	31	20	25	22	1.98
13330270--13330349	38	2.1	38	100	0	160	35	17	23	23	1.96
13337619--13337662	19	2.2	20	84	4	54	63	2	15	18	1.41
13340638--13340733	17	5.7	17	80	2	104	36	0	7	56	1.27
13340668--13340731	6	11.3	6	72	12	55	43	0	3	53	1.16
13340662--13340745	16	5.1	16	77	8	71	42	2	3	51	1.32
13342196--13342611	29	14.1	29	75	10	253	36	28	4	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13342208--13342635	59	7.2	59	73	11	254	36	28	4	30	1.77
13342251--13342653	29	13.8	29	77	9	288	35	28	4	31	1.76
13354987--13356205	39	31.2	39	70	12	624	25	30	19	24	1.98
13354982--13356256	78	16.3	77	79	5	1138	24	30	19	25	1.98
13355104--13356344	39	31.8	39	70	12	203	24	29	19	25	1.99
13355181--13356345	117	9.9	117	70	9	406	24	29	20	25	1.99
13356749--13356828	17	4.7	17	88	0	115	36	0	5	58	1.20
13356766--13356820	11	4.9	11	80	4	65	40	0	1	58	1.09
13356749--13356828	34	2.4	34	91	0	133	36	0	5	58	1.20
13356766--13356826	6	10.7	6	77	10	65	40	0	1	57	1.08
13356768--13356839	17	4.3	17	87	1	65	43	2	1	52	1.24
13357509--13357542	15	2.4	14	95	5	59	61	0	0	38	0.96
13357509--13357542	7	4.7	7	92	7	59	61	0	0	38	0.96
13358566--13358791	29	7.7	28	78	10	197	36	27	4	30	1.78
13358596--13358786	59	3.3	58	86	5	224	37	27	3	31	1.74
13358789--13358847	28	2.0	29	83	6	75	32	35	1	30	1.68
13358742--13358891	29	5.1	29	70	10	92	35	26	3	34	1.73
13364813--13364860	24	2.0	24	87	0	69	20	14	16	47	1.82
13364951--13365038	23	3.8	23	78	4	88	30	10	17	42	1.82
13367485--13367547	32	2.0	32	93	0	108	22	15	20	41	1.90
13375461--13375515	27	2.0	28	82	7	67	23	3	1	70	1.12
13382329--13382355	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13399566--13399597	4	8.0	4	100	0	64	25	0	0	75	0.81
13401012--13401042	13	2.4	13	100	0	62	16	22	16	45	1.85
13406521--13406547	14	1.9	14	100	0	54	66	0	3	29	1.09
13407267--13407326	22	2.8	20	76	14	57	40	10	1	48	1.47
13407795--13407848	17	3.1	17	84	7	56	44	0	5	50	1.25
13409766--13409807	19	2.2	19	86	0	57	35	0	14	50	1.43
13410729--13410787	18	3.2	18	66	29	52	18	15	6	59	1.58
13410699--13410814	37	3.2	37	96	1	207	18	19	6	54	1.66
13410729--13410787	19	3.2	19	64	22	52	18	15	6	59	1.58
13410747--13410805	18	3.2	18	65	21	50	16	20	8	54	1.68
13410746--13410806	19	3.3	19	67	28	58	16	19	8	55	1.65
13419892--13419973	36	2.2	39	86	6	116	52	2	3	41	1.32
13419892--13419950	18	3.3	18	74	9	66	55	1	3	38	1.26
13426899--13426970	3	25.0	3	75	13	53	61	0	0	38	0.96
13426910--13426996	26	3.6	26	70	17	87	56	0	0	43	0.99
13426901--13427001	46	2.2	46	100	0	202	57	0	0	42	0.98
13428341--13428381	3	14.0	3	94	5	75	68	0	0	31	0.90
13429387--13429417	16	2.0	16	93	6	55	32	19	22	25	1.97
13431449--13431687	52	4.6	52	89	0	370	25	13	23	37	1.91
13438564--13438745	52	3.6	52	87	2	244	26	15	24	32	1.96
13439491--13439530	21	1.9	21	94	0	71	30	15	20	35	1.93
13445112--13445159	20	2.5	20	86	3	62	43	2	0	54	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13446367--13446414	24	2.0	24	87	0	69	37	6	6	50	1.53
13448835--13448907	33	2.2	33	88	7	105	26	2	13	57	1.50
13450186--13450215	15	2.0	15	100	0	60	13	13	13	60	1.60
13456212--13456348	49	2.7	50	82	4	150	45	14	24	14	1.82
13457367--13457598	97	2.4	96	76	6	225	40	17	23	18	1.91
13457367--13457868	49	10.2	49	73	4	251	40	19	22	17	1.91
13457665--13457859	99	2.0	98	84	1	255	38	20	25	16	1.92
13457623--13457900	148	1.9	148	79	3	317	38	20	22	18	1.93
13458464--13458543	32	2.5	32	87	4	117	27	1	21	50	1.57
13458464--13458530	32	2.1	33	94	2	118	26	1	25	46	1.62
13458527--13458578	20	2.7	18	80	13	59	28	3	21	46	1.69
13460374--13460414	13	2.9	14	92	7	66	14	9	9	65	1.46
13460374--13460416	15	3.1	14	90	9	70	13	9	11	65	1.48
13468209--13468719	49	10.4	49	73	4	352	39	18	24	17	1.92
13468213--13468719	147	3.5	144	77	8	447	39	18	23	17	1.92
13468487--13468698	99	2.2	100	82	3	252	40	21	21	16	1.91
13468513--13468745	49	4.7	50	75	5	145	38	20	24	17	1.93
13469313--13469383	33	2.2	33	92	2	117	22	2	18	56	1.54
13475115--13475159	21	2.2	21	84	4	56	57	2	0	40	1.11
13477387--13477495	40	2.7	40	89	0	164	23	19	19	37	1.94
13484696--13484724	3	9.7	3	100	0	58	31	0	0	68	0.89
13485334--13485379	18	2.3	21	85	10	62	41	6	0	52	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13486166--13486213	23	2.2	23	82	14	57	47	6	0	45	1.27
13497129--13497172	22	2.0	22	95	0	79	31	11	18	38	1.86
13499223--13499250	3	9.3	3	100	0	56	32	0	0	67	0.91
13504100--13504338	129	1.8	130	81	6	297	33	9	12	43	1.76
13509253--13509335	24	3.5	24	83	0	103	38	16	22	21	1.93
13510526--13510585	3	20.0	3	77	6	59	66	25	3	5	1.27
13510531--13510585	18	3.1	18	89	5	85	65	25	3	5	1.31
13510835--13510910	7	10.6	7	73	17	50	46	32	1	19	1.59
13510835--13510895	14	4.3	15	74	17	58	47	34	1	16	1.56
13510843--13510895	14	3.8	13	80	11	61	47	35	1	15	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163