genome.fa.s8.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  120  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33123820--33124064	92	2.7	92	87	1	339	32	19	16	31	1.94
33124333--33124404	17	4.2	17	75	16	69	44	1	5	48	1.34
33125128--33125199	21	3.3	22	76	7	67	52	2	8	36	1.46
33126299--33126597	29	10.2	29	69	22	87	32	29	3	34	1.75
33126311--33126685	117	3.2	117	90	2	567	32	29	4	34	1.77
33126312--33126685	58	6.4	57	87	5	482	32	28	4	34	1.77
33127939--33128009	33	2.2	33	92	0	115	47	8	16	26	1.75
33132324--33132575	30	8.6	29	80	7	204	36	1	25	36	1.64
33132319--33132575	117	2.2	118	81	4	295	36	1	25	36	1.64
33134206--33134637	50	8.7	49	77	5	357	16	29	18	35	1.92
33134194--33134628	99	4.4	99	78	3	419	15	29	18	36	1.92
33140238--33140703	239	1.9	239	99	0	923	37	19	20	22	1.94
33141281--33141563	59	4.8	59	78	8	263	37	1	24	36	1.66
33141281--33141563	118	2.4	118	81	4	320	37	1	24	36	1.66
33141277--33141573	30	10.1	29	76	10	149	36	2	23	37	1.67
33142517--33142606	17	5.3	17	83	0	108	43	1	3	52	1.25
33143189--33143242	26	2.1	25	86	3	72	53	3	0	42	1.18
33143971--33144198	29	7.7	30	80	6	216	37	25	2	34	1.70
33143971--33144198	59	3.9	58	80	7	194	37	25	2	34	1.70
33144424--33144617	97	2.0	100	81	7	236	34	13	11	39	1.82
33156195--33156423	92	2.5	92	92	1	379	31	16	18	33	1.93
33156196--33156450	92	2.8	91	88	1	375	31	17	18	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33157104--33157164	6	10.7	6	77	10	65	40	1	3	54	1.27
33157104--33157176	17	4.3	17	83	0	92	42	2	2	52	1.30
33157104--33157164	11	5.4	11	79	13	61	40	1	3	54	1.27
33157119--33157177	28	2.1	28	84	12	77	44	3	3	49	1.36
33157295--33157356	21	3.2	21	61	25	55	32	41	3	22	1.70
33157290--33157372	36	2.3	36	100	0	166	33	43	2	20	1.65
33157845--33157871	12	2.2	12	100	0	54	55	0	0	44	0.99
33159028--33159095	30	2.3	30	80	10	77	41	17	2	38	1.65
33159020--33159221	29	6.9	28	75	10	129	36	25	2	35	1.71
33159020--33159217	58	3.4	57	77	6	193	36	24	3	35	1.71
33162534--33162571	14	2.6	15	79	8	51	21	0	18	60	1.36
33167062--33167086	2	12.5	2	100	0	50	52	0	0	48	1.00
33173669--33173741	36	2.0	36	91	0	119	21	16	21	39	1.92
33175801--33175850	22	2.3	20	78	18	55	18	6	6	70	1.29
33175799--33175852	24	2.4	22	81	6	63	18	5	5	70	1.27
33176345--33176387	22	2.0	22	95	0	77	34	34	9	20	1.85
33176704--33176828	66	1.9	66	83	3	162	13	23	18	44	1.85
33180369--33180432	25	2.5	25	94	5	110	34	3	3	59	1.29
33198487--33198515	9	3.2	9	100	0	58	20	13	20	44	1.85
33198487--33198524	18	2.1	18	90	0	58	26	13	15	44	1.83
33198626--33198689	31	2.1	31	93	0	110	25	12	14	48	1.78
33202040--33202103	27	2.4	27	89	0	101	34	21	17	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33203795--33203940	74	2.0	74	93	2	249	28	23	10	38	1.87
33205618--33205678	19	3.2	19	81	9	63	72	1	3	22	1.09
33205618--33205678	18	3.2	19	81	6	61	72	1	3	22	1.09
33206657--33206702	24	1.9	23	86	8	65	56	6	4	32	1.45
33206773--33206806	13	2.6	13	85	0	50	58	5	0	35	1.22
33207329--33207380	20	2.6	19	81	6	59	55	5	0	38	1.24
33210904--33210950	22	2.2	20	81	7	58	29	0	2	68	1.02
33220338--33220689	173	2.0	174	80	5	390	39	19	13	27	1.89
33228767--33228804	13	2.9	13	92	0	67	50	21	5	23	1.69
33229876--33229937	31	2.1	28	82	11	72	43	14	9	32	1.78
33230846--33230912	28	2.3	29	92	5	109	25	11	11	50	1.73
33230912--33231049	59	2.4	57	80	9	136	26	15	9	48	1.76
33231211--33231342	60	2.2	59	82	4	158	49	13	13	23	1.78
33231267--33231321	28	2.0	28	82	3	67	56	7	14	21	1.63
33234367--33234469	28	3.6	28	75	12	102	36	3	23	35	1.73
33234367--33234672	145	2.1	144	82	4	357	37	5	23	32	1.79
33234684--33234888	59	3.4	59	76	7	166	34	5	27	32	1.81
33234689--33234849	88	1.8	88	82	2	207	35	4	26	32	1.78
33234677--33234889	29	7.2	30	77	8	161	34	6	26	32	1.81
33236111--33236142	3	10.7	3	93	0	55	31	0	3	65	1.08
33236912--33236958	16	2.8	17	80	6	60	59	6	0	34	1.23
33236917--33236987	27	2.5	28	82	8	83	57	9	0	32	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33236899--33236953	16	3.4	16	80	5	65	52	3	0	43	1.18
33239712--33239780	36	1.9	36	87	0	102	36	23	8	31	1.85
33241735--33241796	28	2.2	28	88	0	88	24	11	35	29	1.90
33241792--33241869	38	2.1	38	92	0	129	35	7	24	32	1.84
33241830--33242189	59	6.1	59	83	6	444	33	3	28	34	1.73
33241830--33242187	177	2.0	179	87	3	517	34	3	28	34	1.73
33242220--33242554	161	2.1	160	93	1	564	44	13	16	25	1.84
33242220--33242635	161	2.6	161	85	6	483	46	12	16	25	1.81
33243392--33243430	16	2.5	15	84	8	51	41	0	0	58	0.98
33244142--33244212	17	4.2	16	77	10	70	52	5	1	40	1.34
33244142--33244212	34	2.1	34	86	0	97	52	5	1	40	1.34
33244617--33244812	38	5.3	38	64	23	132	32	18	15	33	1.93
33244499--33244857	76	4.9	76	90	7	564	32	18	14	33	1.92
33244740--33244857	38	3.1	39	68	26	115	33	18	14	33	1.91
33244797--33244914	60	2.0	60	100	0	236	33	20	11	35	1.88
33244857--33245310	76	6.0	76	97	0	856	32	18	16	33	1.93
33257468--33257803	29	11.5	28	69	22	185	33	2	29	33	1.73
33257449--33257806	59	6.1	59	84	4	465	32	3	30	32	1.76
33257702--33257818	30	4.0	28	73	16	76	34	3	29	32	1.74
33257877--33258210	162	2.1	162	97	0	632	44	13	17	25	1.85
33259069--33259107	16	2.5	15	84	8	51	41	0	0	58	0.98
33259819--33259887	17	4.1	16	80	10	75	55	4	1	39	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33259833--33259882	23	2.2	23	85	7	66	52	4	2	42	1.31
33259819--33259887	34	2.0	34	88	0	102	55	4	1	39	1.29
33261926--33261977	17	3.0	17	85	2	59	36	1	3	57	1.28
33263781--33263807	4	6.8	4	100	0	54	22	0	25	51	1.48
33276295--33276324	15	2.0	15	93	0	51	30	23	6	40	1.80
33276395--33276444	26	1.9	26	84	8	66	42	20	8	30	1.80
33278468--33279206	368	2.0	368	99	0	1469	36	13	17	31	1.89
33279248--33279302	27	2.0	27	100	0	110	32	14	3	49	1.61
33288506--33288542	16	2.4	16	90	4	58	37	2	5	54	1.38
33312763--33312815	18	2.9	18	85	0	79	18	11	28	41	1.85
33318906--33319093	42	4.5	42	79	2	198	24	25	12	37	1.91
33334360--33334398	15	2.6	15	87	0	51	17	28	10	43	1.82
33334371--33334405	15	2.3	15	95	0	61	11	28	5	54	1.59
33356495--33356529	3	11.7	3	93	0	61	34	37	0	28	1.58
33356525--33356614	45	2.0	45	97	0	171	42	23	2	32	1.66
33366090--33366154	32	2.0	32	100	0	130	35	12	18	33	1.88
33372303--33372369	30	2.2	31	86	7	93	41	11	23	22	1.87
33378004--33378038	16	2.1	16	89	10	52	54	0	0	45	0.99
33379773--33379948	91	1.9	91	100	0	352	26	18	14	40	1.89
33381673--33381715	18	2.2	20	80	12	54	60	0	6	32	1.23
33398100--33398132	16	2.1	16	100	0	66	24	6	6	63	1.40
33409751--33409805	17	3.3	17	82	2	76	54	3	1	40	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33410075--33410763	209	3.3	209	86	2	877	22	20	19	37	1.94
33413384--33413421	16	2.2	17	86	9	51	65	0	13	21	1.26
33417914--33417981	30	2.3	29	80	5	82	36	4	20	38	1.73
33417992--33418137	30	5.0	28	73	19	102	33	4	26	35	1.76
33417933--33418176	59	4.2	59	77	9	219	36	5	26	32	1.79
33417996--33418105	30	3.7	30	78	10	109	35	3	23	37	1.73
33418143--33418274	29	4.5	30	73	9	94	32	6	29	31	1.83
33417946--33418176	58	3.9	58	77	7	225	35	5	25	33	1.79
33417916--33418254	29	11.6	29	68	10	84	34	6	26	32	1.81
33418305--33418390	30	2.9	30	78	3	93	39	6	19	33	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163