genome.fa.s8.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  156  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43663183--43663209	2	13.5	2	100	0	54	51	0	48	0	1.00
43667242--43667322	38	2.1	38	93	0	135	40	14	12	32	1.83
43672148--43672230	28	2.9	29	70	13	82	43	1	2	53	1.21
43675633--43675672	21	1.9	21	84	0	53	32	15	2	50	1.57
43676671--43676757	39	2.2	39	95	2	156	39	18	16	26	1.91
43676812--43676896	24	3.5	24	71	9	68	45	1	1	51	1.16
43677469--43677511	17	2.5	17	85	7	52	55	0	4	39	1.20
43684450--43684483	17	2.0	17	88	0	50	58	0	2	38	1.13
43684615--43684942	165	2.0	161	91	7	529	43	4	8	42	1.55
43684814--43684846	13	2.5	13	95	0	57	81	0	0	18	0.68
43687710--43687761	22	2.4	22	87	6	70	50	5	7	36	1.55
43688698--43688727	6	5.0	6	100	0	60	83	0	0	16	0.65
43692610--43692642	14	2.3	15	89	5	50	63	0	0	36	0.95
43704928--43705043	54	2.1	55	91	1	189	46	10	14	28	1.77
43718357--43718399	3	14.3	3	100	0	86	32	0	0	67	0.91
43719941--43720013	2	36.0	2	91	2	119	49	0	1	49	1.09
43736791--43736825	18	1.9	18	88	0	52	42	2	34	20	1.66
43762103--43762218	53	2.2	53	92	1	187	43	0	9	47	1.36
43766119--43766309	76	2.6	76	92	4	311	37	11	7	43	1.69
43766279--43766340	21	3.0	21	75	9	58	33	3	8	54	1.46
43767772--43767810	15	2.4	16	87	8	53	35	0	0	64	0.94
43769683--43769715	12	2.5	14	90	9	52	66	0	3	30	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43788911--43788965	24	2.3	24	79	11	60	72	1	10	14	1.19
43790441--43790504	22	2.9	22	68	6	58	56	4	7	31	1.49
43792669--43792738	32	2.2	33	87	10	101	52	4	14	28	1.60
43793334--43793416	29	2.8	30	75	15	82	31	3	3	61	1.30
43805463--43805489	7	3.9	7	100	0	54	88	0	0	11	0.50
43806427--43806475	24	2.0	24	100	0	98	28	16	12	42	1.84
43811329--43811398	33	2.2	32	82	7	79	61	5	4	28	1.38
43812855--43812924	30	2.4	29	75	11	72	34	4	7	54	1.47
43816719--43816802	6	14.3	6	67	14	50	55	3	1	39	1.25
43816705--43816781	17	4.4	17	80	6	91	57	2	2	37	1.27
43816715--43816783	36	1.9	36	96	0	129	59	4	1	34	1.26
43830184--43830234	20	2.5	20	77	20	52	43	0	0	56	0.99
43831303--43831359	29	1.9	30	86	10	82	29	5	15	49	1.67
43834964--43835006	18	2.4	18	80	7	52	46	2	0	51	1.13
43842539--43842564	4	6.5	4	100	0	52	0	0	73	26	0.84
43847776--43847828	26	2.0	27	88	3	81	56	5	3	33	1.41
43848772--43848828	28	2.0	28	86	3	78	40	1	3	54	1.28
43849166--43849308	75	1.9	78	81	7	177	30	12	9	48	1.72
43849324--43849357	11	3.1	11	84	16	52	26	2	0	70	1.01
43849490--43849711	99	2.2	99	94	0	381	47	10	12	29	1.74
43849734--43850018	150	1.9	149	89	0	444	32	9	10	48	1.69
43851180--43851774	165	3.6	163	81	7	639	30	23	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43862166--43862192	2	13.5	2	100	0	54	48	0	0	51	1.00
43862899--43863018	61	2.0	61	98	0	231	23	20	25	30	1.98
43867269--43867297	3	9.7	3	100	0	58	0	34	0	65	0.93
43871384--43871656	90	3.0	90	95	0	483	16	26	19	38	1.92
43886777--43886816	20	2.0	20	90	0	62	20	15	22	42	1.88
43902780--43902813	16	2.1	17	88	5	52	61	5	0	32	1.20
43904098--43904148	23	2.1	25	82	13	63	52	5	0	41	1.25
43908917--43908943	6	4.5	6	100	0	54	33	18	29	18	1.95
43929901--43929941	16	2.5	17	80	15	50	39	0	0	60	0.96
43954771--43954819	24	2.0	24	96	0	89	55	6	12	26	1.60
43955142--43955177	12	2.8	13	91	8	56	44	0	11	44	1.39
43959629--43959691	28	2.2	28	100	0	126	49	25	9	15	1.75
43968846--43968875	2	15.0	2	92	0	51	50	3	0	46	1.18
43975402--43975460	32	1.9	30	86	6	82	54	0	1	44	1.10
43987285--43987311	2	13.5	2	100	0	54	0	48	0	51	1.00
44004270--44004341	11	6.9	11	75	13	55	68	0	0	31	0.90
44004268--44004344	14	5.3	14	76	14	84	68	0	0	31	0.90
44004280--44004358	36	2.2	36	81	4	88	67	2	1	29	1.12
44004271--44004343	3	25.7	3	77	10	73	68	0	0	31	0.90
44004574--44004602	5	6.0	5	92	8	51	20	0	0	79	0.74
44004574--44004602	9	3.0	10	90	10	51	20	0	0	79	0.74
44004574--44004600	14	1.9	14	100	0	54	18	0	0	81	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44023663--44023687	13	1.9	13	100	0	50	32	0	0	68	0.90
44028382--44028465	42	2.0	42	86	4	116	47	17	0	34	1.48
44034777--44034805	5	5.8	5	100	0	58	20	20	41	17	1.90
44036237--44036305	27	3.1	22	80	19	65	30	8	17	43	1.79
44037008--44037039	3	10.7	3	93	0	55	71	0	28	0	0.86
44042960--44042996	5	7.6	5	88	11	51	37	0	0	62	0.96
44042944--44043001	13	4.2	14	81	16	59	39	0	1	58	1.08
44043897--44043948	24	2.2	24	86	6	70	19	53	7	19	1.68
44043921--44043962	18	2.3	18	87	0	57	21	45	9	23	1.81
44047930--44047956	7	3.9	7	100	0	54	29	0	25	44	1.54
44048006--44048066	29	2.1	29	85	8	81	60	8	3	27	1.41
44051496--44051526	6	5.2	6	92	0	53	19	35	16	29	1.93
44053589--44053693	51	2.1	51	100	0	210	42	7	11	38	1.69
44057680--44057708	9	3.2	9	100	0	58	62	0	13	24	1.32
44060827--44060910	29	2.8	28	79	12	71	58	3	4	33	1.36
44061523--44061577	26	2.0	29	82	10	71	27	7	0	65	1.19
44061988--44062019	16	2.1	16	94	5	57	40	0	0	59	0.97
44062406--44062453	19	2.5	20	80	6	55	16	12	12	58	1.63
44084162--44084189	7	4.0	7	100	0	56	57	0	0	42	0.99
44087298--44087355	26	2.2	26	96	0	107	27	18	13	39	1.89
44091089--44091130	21	2.0	22	81	13	52	47	0	2	50	1.14
44091150--44091182	11	2.8	12	86	9	50	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44092028--44092081	23	2.3	23	87	9	74	29	11	22	37	1.89
44092170--44092225	29	1.9	29	88	0	85	51	7	12	28	1.65
44093203--44093412	84	2.5	83	82	6	230	56	4	15	23	1.57
44093297--44093369	37	1.9	37	83	10	94	54	1	17	26	1.51
44093387--44093452	21	3.1	21	65	8	53	66	4	12	16	1.39
44099951--44099987	6	6.2	6	93	0	65	64	0	2	32	1.07
44104066--44104101	15	2.4	15	90	0	54	30	0	0	69	0.89
44104385--44104450	29	2.2	31	78	10	75	43	12	3	40	1.57
44104770--44104813	3	14.7	3	85	0	61	34	59	0	6	1.24
44108074--44108149	2	38.0	2	100	0	152	50	0	0	50	1.00
44111096--44111157	4	15.5	4	96	0	88	32	0	17	50	1.47
44112851--44112981	65	2.0	65	98	0	253	17	18	22	41	1.90
44117957--44118014	25	2.3	25	82	11	66	29	3	3	63	1.27
44117957--44118013	27	2.2	25	81	9	62	28	3	3	64	1.26
44122568--44122601	17	2.0	17	88	0	50	52	0	0	47	1.00
44128158--44128300	30	4.8	30	85	5	191	40	4	17	37	1.71
44130454--44130879	49	8.7	49	83	2	480	16	24	18	40	1.91
44140430--44140928	258	1.9	258	96	0	917	28	22	17	31	1.97
44142866--44142968	30	3.4	30	86	0	152	41	4	18	34	1.72
44142866--44142980	30	3.8	30	81	4	133	43	4	18	33	1.70
44144329--44144367	18	2.2	18	90	0	60	23	17	46	12	1.83
44149525--44149558	15	2.3	15	95	5	61	29	5	0	64	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44150361--44150390	14	2.1	15	93	6	53	43	13	0	43	1.43
44150346--44150513	47	3.6	46	78	12	191	50	11	7	30	1.66
44150341--44150513	91	1.9	90	86	3	249	50	10	7	31	1.65
44150341--44150478	44	3.1	43	80	13	154	49	11	8	30	1.69
44150466--44150639	32	5.4	32	93	2	296	54	9	4	31	1.54
44153614--44153646	7	4.9	7	96	3	59	27	27	15	30	1.96
44160494--44160675	91	2.0	91	100	0	364	24	17	20	37	1.94
44162141--44162191	26	1.9	27	84	11	70	54	5	0	39	1.24
44162517--44162604	42	2.1	42	86	0	122	40	13	18	27	1.88
44174541--44174619	40	2.0	41	92	2	133	39	15	20	25	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163