genome.fa.s8.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  101  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28569244--28569403	31	5.4	30	67	15	91	43	13	20	23	1.86
28569220--28569403	59	3.1	59	81	3	228	43	13	17	25	1.86
28578042--28578116	27	2.8	27	76	11	82	54	2	0	42	1.14
28578045--28578127	27	3.0	26	76	10	78	55	3	0	40	1.17
28584252--28585439	594	2.0	594	99	0	2349	36	13	16	34	1.87
28586238--28586266	15	1.9	15	100	0	58	27	0	24	48	1.51
28587587--28588063	237	2.0	237	100	0	954	24	14	18	41	1.88
28591187--28591269	25	3.4	25	80	6	98	20	3	32	43	1.69
28591164--28591341	48	3.7	47	78	8	164	19	2	33	44	1.65
28591147--28591346	23	8.6	22	76	9	132	19	2	34	44	1.64
28597727--28597776	24	2.1	25	88	7	77	50	8	14	28	1.70
28600407--28600464	3	19.0	3	79	10	55	1	27	0	70	0.97
28602990--28603097	56	1.9	56	92	0	180	32	15	21	30	1.94
28615522--28615889	183	2.0	183	96	0	682	28	20	18	32	1.96
28617794--28617983	94	2.0	96	84	6	253	39	16	16	26	1.90
28618116--28618173	19	3.2	17	77	15	55	65	5	1	27	1.23
28618311--28618715	29	13.8	28	76	10	143	37	3	23	35	1.72
28618377--28618715	30	11.4	29	79	9	303	38	2	23	36	1.66
28618405--28618742	59	5.7	59	78	9	269	39	2	21	36	1.67
28620529--28620606	17	4.6	17	81	7	88	58	5	1	34	1.28
28620531--28620616	35	2.5	33	85	9	109	59	4	1	34	1.26
28621010--28621057	18	2.7	18	87	6	62	70	0	0	29	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28624268--28624329	27	2.3	27	86	5	81	25	14	35	24	1.93
28624870--28624919	14	3.6	13	79	12	55	48	24	0	28	1.52
28624870--28624916	21	2.2	22	78	17	55	48	25	0	25	1.51
28624987--28625035	14	3.3	14	76	15	53	48	28	0	22	1.50
28625080--28625163	26	3.2	26	84	0	96	57	11	0	30	1.35
28625216--28625263	15	3.1	17	69	30	52	50	0	6	43	1.27
28626828--28626889	27	2.3	27	86	5	81	30	35	19	14	1.92
28629385--28629441	11	5.0	11	82	6	69	42	0	1	56	1.10
28629390--28629482	17	5.4	17	83	2	123	44	0	3	52	1.17
28629398--28629486	11	7.7	11	74	8	70	43	0	3	52	1.17
28629398--28629490	6	16.0	6	76	10	95	45	0	3	51	1.17
28631232--28631637	29	14.0	30	77	9	364	36	23	2	37	1.67
28631232--28631636	87	4.7	88	79	8	449	36	23	2	37	1.67
28631693--28631747	16	3.7	14	77	18	58	18	9	1	70	1.22
28631711--28631756	14	3.4	14	75	24	53	17	8	4	69	1.31
28631693--28631752	28	2.1	29	87	12	88	18	10	3	68	1.32
28641281--28641307	3	9.0	3	100	0	54	66	0	33	0	0.92
28643563--28644447	39	22.7	40	66	12	258	25	28	19	26	1.99
28643563--28644473	78	11.7	78	82	1	955	25	28	19	26	1.99
28646628--28646819	30	6.5	30	81	5	176	37	25	2	35	1.68
28646625--28646797	88	2.0	88	80	4	197	36	26	2	35	1.69
28646663--28646819	59	2.7	57	78	9	174	36	24	1	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28647703--28649363	554	3.1	544	75	9	1260	37	12	15	34	1.85
28652109--28652174	27	2.4	28	78	12	73	28	12	24	34	1.91
28652156--28652293	30	4.6	30	76	11	113	44	3	19	31	1.68
28652207--28652337	30	4.3	30	77	9	97	40	2	23	33	1.67
28652160--28652338	91	2.0	89	83	4	225	43	2	21	32	1.67
28654217--28654306	17	5.2	17	79	4	90	52	3	1	43	1.25
28654231--28654290	6	10.3	6	76	7	52	55	3	0	41	1.16
28659960--28659995	17	2.0	19	89	10	58	50	2	11	36	1.53
28660280--28660744	230	2.0	230	91	1	745	38	14	16	31	1.88
28672702--28672733	14	2.4	13	94	5	55	28	18	31	21	1.97
28679927--28679961	16	2.2	16	90	5	54	8	8	34	48	1.64
28681566--28681703	24	5.8	25	73	13	121	42	17	23	16	1.89
28681673--28681827	24	6.5	24	77	4	125	41	15	21	21	1.89
28681566--28681773	48	4.3	49	77	8	151	44	16	21	17	1.87
28688507--28688552	22	2.1	22	87	0	65	21	34	8	34	1.84
28691083--28691129	23	2.0	23	84	8	60	4	4	27	63	1.31
28697879--28697946	2	34.5	2	97	2	129	50	0	0	50	1.00
28699192--28699504	172	1.8	174	83	4	427	44	4	6	44	1.50
28723254--28723317	18	3.4	18	73	24	60	60	6	0	32	1.21
28728083--28728127	11	3.9	11	80	11	54	4	11	0	84	0.76
28729079--28729120	15	2.9	15	85	3	59	61	0	26	11	1.30
28729303--28729339	18	1.9	19	89	10	58	40	0	10	48	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28730363--28730417	26	2.2	25	87	9	76	61	3	0	34	1.13
28736821--28736885	29	2.2	30	81	10	80	43	1	21	33	1.62
28736893--28737199	29	10.4	29	75	6	244	34	3	27	34	1.75
28736893--28737199	59	5.2	59	80	6	313	34	3	27	34	1.75
28736945--28737238	118	2.5	119	83	6	357	35	5	26	32	1.79
28736947--28737238	59	5.0	58	80	7	304	35	5	26	32	1.79
28738938--28739006	6	12.0	6	72	14	56	52	4	2	40	1.36
28738940--28739025	17	5.1	17	84	0	109	56	3	2	37	1.29
28739528--28740031	39	12.9	39	72	14	263	25	19	30	24	1.98
28739558--28740014	78	5.9	78	81	2	497	26	20	29	23	1.99
28752247--28752311	29	2.2	30	83	10	89	41	3	21	33	1.69
28752356--28752607	60	4.3	59	76	10	221	33	4	25	36	1.76
28752377--28752606	30	7.7	30	71	9	114	35	3	25	35	1.74
28752401--28752607	30	6.9	30	72	11	138	34	4	26	34	1.78
28754323--28754407	6	14.8	6	72	14	72	54	3	2	40	1.31
28754324--28754426	17	6.1	17	86	0	143	57	2	1	37	1.25
28766569--28766648	24	3.5	24	84	10	121	31	26	20	22	1.98
28766590--28766631	21	2.0	21	95	0	75	35	23	16	23	1.95
28775003--28775027	2	12.5	2	100	0	50	52	0	48	0	1.00
28778741--28778977	12	19.6	12	75	5	208	40	5	9	43	1.61
28779603--28779636	14	2.4	14	90	0	50	58	2	35	2	1.28
28780079--28780220	70	2.0	70	86	2	196	45	23	4	26	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28781470--28781571	48	2.1	48	92	3	170	35	17	6	40	1.77
28786246--28786347	48	2.1	48	98	0	195	36	19	6	37	1.79
28797574--28797599	7	3.7	7	100	0	52	30	0	53	15	1.42
28797822--28797863	22	1.9	21	85	9	57	47	16	0	35	1.47
28810145--28810188	23	2.0	22	86	4	61	38	0	15	45	1.47
28811535--28811597	32	2.0	32	90	6	101	4	22	12	60	1.51
28838033--28838078	25	1.9	25	86	8	69	32	4	6	56	1.45
28842066--28842108	17	2.5	17	88	7	61	20	4	0	74	1.00
28842066--28842108	6	7.8	5	85	14	50	20	4	0	74	1.00
28842066--28842111	11	4.1	11	84	15	58	21	4	0	73	1.00
28843044--28843077	17	1.9	18	94	5	61	76	0	11	11	1.02
28843072--28843102	15	2.0	16	93	6	55	83	0	12	3	0.75
28843051--28843094	20	2.2	20	88	4	63	84	0	11	4	0.77
28843424--28843450	9	3.0	9	100	0	54	11	11	33	44	1.75
28859351--28859380	13	2.2	14	94	5	53	66	0	30	3	1.07
28859927--28859967	15	3.0	14	76	20	50	51	9	31	7	1.62
28860378--28860416	17	2.4	17	87	12	55	15	17	15	51	1.77
28868711--28868748	11	3.5	11	80	20	53	89	0	10	0	0.49
28876518--28876763	51	4.8	51	89	0	366	30	21	14	33	1.94
28876475--28876763	102	2.8	102	89	2	427	30	21	14	33	1.93
28912160--28912446	145	2.0	145	85	0	385	25	19	18	35	1.95
28917381--28917427	18	2.6	18	100	0	94	61	0	34	4	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28919099--28919147	17	3.0	15	75	18	53	79	0	16	4	0.88
28927495--28927543	22	2.2	22	96	0	89	44	16	16	22	1.86
28959237--28959280	23	2.0	22	86	4	61	45	15	0	38	1.47
28974939--28975069	6	20.4	7	93	6	169	14	12	0	72	1.12
28974939--28975204	6	41.2	6	80	13	162	15	6	3	74	1.17
28975043--28975181	38	3.8	35	83	11	156	15	0	5	78	0.93
28974958--28975203	33	7.6	32	78	12	141	16	5	3	74	1.15
28977073--28977118	25	1.9	25	86	8	69	32	4	6	56	1.45
28979435--28979462	12	2.3	12	100	0	56	25	17	25	32	1.97
28989319--28989354	14	2.6	14	95	0	63	38	5	22	33	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163