genome.fa.s8.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  68  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17714711--17714766	25	2.2	25	83	3	67	76	5	0	17	0.96
17718138--17718182	20	2.3	19	80	3	54	73	4	0	22	1.01
17723219--17723243	6	4.2	6	100	0	50	0	16	16	68	1.22
17726397--17726447	18	2.8	19	85	8	70	13	23	1	60	1.43
17730680--17730731	21	2.5	20	87	6	68	32	21	17	28	1.96
17732882--17732929	14	3.3	14	86	11	69	16	12	2	68	1.29
17732882--17732931	16	3.2	16	91	5	77	16	12	2	70	1.26
17743839--17743982	76	1.9	76	87	5	211	41	15	18	23	1.89
17743940--17744032	48	1.9	48	91	0	150	39	12	23	23	1.89
17743863--17744962	124	8.9	124	88	1	1593	40	17	20	21	1.92
17744184--17744277	48	2.0	48	86	0	134	40	17	21	21	1.91
17744308--17744399	48	1.9	48	84	4	123	40	14	22	22	1.90
17744680--17744771	48	1.9	48	90	0	148	40	14	22	22	1.90
17744803--17744897	48	2.0	48	85	0	127	41	14	21	23	1.90
17744852--17745038	75	2.5	76	92	1	313	39	19	20	20	1.93
17744728--17745162	199	2.2	200	91	1	703	39	17	20	21	1.92
17744604--17745296	323	2.1	324	89	2	1063	40	17	20	21	1.92
17744480--17745409	447	2.1	448	91	0	1504	40	17	20	22	1.91
17744928--17745643	124	5.8	123	88	1	958	40	18	20	21	1.92
17745003--17745095	48	1.9	48	88	0	141	38	13	24	22	1.91
17745127--17745220	48	2.0	48	91	0	152	39	15	23	21	1.92
17745250--17745343	48	2.0	48	91	4	154	42	14	19	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17745498--17745591	47	2.0	48	89	2	145	38	18	24	19	1.93
17746619--17746661	18	2.5	17	88	3	59	72	4	0	23	1.04
17747364--17747513	30	5.0	30	74	11	119	36	22	8	34	1.83
17747365--17747513	60	2.5	60	73	13	146	36	22	8	33	1.83
17747329--17747521	90	2.1	90	86	3	264	36	23	6	33	1.81
17750629--17750677	25	2.0	24	88	4	71	53	2	2	42	1.24
17751105--17751225	52	2.3	52	82	12	133	28	3	4	62	1.32
17762683--17762712	3	10.0	3	100	0	60	33	0	0	66	0.92
17765342--17765499	28	5.6	28	84	0	181	33	18	13	34	1.90
17765342--17765491	56	2.7	56	86	0	210	33	18	13	35	1.89
17770720--17770769	14	3.1	16	83	16	68	58	0	2	40	1.10
17772102--17772235	58	2.3	58	84	1	162	28	9	14	47	1.75
17776529--17776568	21	2.0	20	85	5	53	65	7	5	22	1.38
17783841--17784097	115	2.3	113	88	2	372	30	15	17	36	1.91
17785641--17785670	14	2.2	14	94	5	53	30	23	10	36	1.87
17788089--17788291	36	5.6	36	84	4	230	27	13	22	36	1.92
17788089--17788295	72	2.9	72	84	4	265	28	13	22	36	1.92
17788089--17788295	108	1.9	108	83	5	267	28	13	22	36	1.92
17796382--17796438	17	3.4	17	75	0	69	43	1	35	19	1.61
17796383--17796456	34	2.2	34	87	0	103	47	1	31	20	1.59
17815563--17815812	53	4.7	53	85	5	319	26	14	22	36	1.92
17815563--17815812	107	2.4	107	85	5	346	26	14	22	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17816495--17816551	21	2.7	21	88	0	78	28	15	22	33	1.95
17818384--17818540	45	3.5	45	77	4	145	42	17	24	15	1.88
17831420--17831458	20	2.0	20	94	0	69	33	0	35	30	1.58
17833454--17833490	19	1.9	19	100	0	74	45	5	16	32	1.70
17837270--17837295	12	2.2	12	100	0	52	30	34	7	26	1.85
17851302--17851541	20	11.9	20	86	1	266	12	18	29	40	1.87
17851302--17851541	60	4.0	60	84	4	304	12	18	29	40	1.87
17856667--17856694	13	2.2	13	100	0	56	7	7	25	60	1.48
17863194--17863239	22	2.1	21	81	18	51	56	2	6	34	1.37
17872702--17872739	18	2.1	18	100	0	76	21	21	21	36	1.95
17882489--17882536	13	3.8	12	76	10	51	52	2	29	16	1.56
17885766--17885827	31	2.0	31	96	0	115	32	24	19	24	1.98
17898227--17898297	3	23.7	3	85	5	99	0	32	1	66	1.01
17909760--17909802	21	2.0	21	86	8	61	65	13	6	13	1.46
17920822--17920847	12	2.2	12	100	0	52	30	7	0	61	1.24
17921065--17921099	17	2.0	18	88	5	54	17	0	0	82	0.66
17923726--17923763	5	7.6	5	85	8	51	18	5	0	76	0.97
17923725--17923763	14	2.6	15	80	12	53	17	7	0	74	1.05
17923726--17923763	19	2.0	20	89	5	60	18	5	0	76	0.97
17931184--17931221	15	2.5	15	95	0	67	39	7	13	39	1.73
17938773--17938826	27	2.0	27	100	0	108	44	7	18	29	1.77
17947658--17947723	30	2.2	28	78	21	71	43	7	3	45	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17948308--17948343	18	2.0	18	94	0	63	66	0	2	30	1.06
17949294--17949347	4	14.0	4	75	14	51	20	0	1	77	0.86
17949316--17949352	12	3.2	12	85	11	51	32	0	0	67	0.91
17949421--17949449	14	2.0	15	93	6	51	37	27	6	27	1.82
17949772--17949808	16	2.4	16	90	4	58	29	8	0	62	1.24
17962788--17962931	50	2.9	49	71	15	123	35	20	18	25	1.95
17972291--17972348	29	2.0	30	89	3	91	34	0	10	55	1.34
17972292--17972363	30	2.5	29	84	4	83	36	0	6	56	1.26
17972475--17972535	31	2.0	31	83	6	79	45	9	6	37	1.63
17972649--17972686	18	2.1	19	95	5	69	42	0	0	57	0.98
17972800--17972853	24	2.2	24	78	12	58	35	1	1	61	1.18
17973335--17973360	13	2.0	13	100	0	52	61	0	0	38	0.96
17976555--17976593	16	2.5	15	83	4	51	76	7	0	15	0.99
17976551--17976738	99	1.9	99	84	12	253	66	7	5	20	1.37
17977546--17978108	98	5.7	98	77	5	426	17	22	18	40	1.91
17977620--17978088	147	3.2	146	80	3	415	18	22	17	41	1.90
17977563--17978109	49	11.1	48	70	10	286	17	23	18	41	1.90
17979162--17979232	16	4.5	15	77	17	65	1	19	0	78	0.82
17979162--17979227	6	11.0	6	76	20	59	1	19	0	78	0.82
17979164--17979232	24	3.0	21	74	15	66	1	18	0	79	0.80
17979180--17979227	7	6.7	7	84	11	53	0	20	0	79	0.74
17979225--17979321	43	2.2	43	82	10	108	17	17	13	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17987184--17987226	15	2.9	15	75	3	52	69	9	2	18	1.26
17987216--17987279	19	3.4	19	73	16	53	71	6	3	18	1.20
17987308--17987354	4	12.0	4	78	13	53	70	2	2	25	1.10
17987307--17987349	15	2.9	15	83	10	52	72	2	2	23	1.08
17991580--17991724	30	4.9	30	82	0	148	38	25	12	23	1.90
17991591--17991764	60	2.9	60	76	2	163	40	24	11	23	1.87
17994008--17994046	18	2.2	18	86	9	53	30	12	0	56	1.37
18003073--18003112	14	2.7	15	84	7	55	35	2	0	62	1.09
18003074--18003117	21	2.0	22	87	12	65	31	2	0	65	1.05
18005560--18005599	21	1.9	21	84	0	53	25	0	22	52	1.47
18022203--18022321	50	2.4	50	83	5	134	29	18	31	20	1.96
18024082--18024125	21	2.0	22	86	4	63	25	0	9	65	1.21
18025450--18025516	24	2.8	25	82	8	77	26	23	22	26	2.00
18026113--18026261	58	2.5	59	84	6	205	53	2	1	43	1.20
18032098--18032162	24	2.7	23	76	9	67	50	6	16	26	1.68
18039779--18039819	19	2.2	19	86	8	57	43	2	0	53	1.13
18042973--18043030	2	29.0	2	100	0	116	50	0	0	50	1.00
18044435--18044459	10	2.5	10	100	0	50	16	0	16	68	1.22
18044460--18044491	16	2.0	16	93	0	55	53	0	18	28	1.45
18044948--18045048	24	4.2	24	77	7	98	29	23	20	25	1.99
18044947--18045039	47	2.0	48	85	6	127	30	23	21	24	1.99
18056869--18056913	20	2.2	20	84	7	56	31	13	2	53	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18058367--18058406	17	2.4	17	86	0	53	55	0	0	45	0.99
18060922--18060992	17	3.9	18	75	18	51	63	0	16	19	1.31
18067571--18067628	29	2.0	29	93	0	98	39	18	15	25	1.91
18068239--18068355	59	2.0	59	83	8	148	41	12	2	43	1.56
18069268--18069310	21	2.0	21	81	0	50	69	4	2	23	1.18
18070769--18070834	2	33.0	2	100	0	132	50	0	0	50	1.00
18071392--18071444	26	2.0	26	85	7	72	47	3	18	30	1.67
18074551--18074671	29	4.1	29	76	10	111	37	2	26	33	1.70
18076611--18076665	6	10.0	6	74	18	57	54	1	0	43	1.10
18076595--18076665	17	4.3	15	75	21	54	52	4	1	42	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163