genome.fa.s8.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  61  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15529346--15529499	71	2.2	71	87	4	222	26	16	24	33	1.96
15531551--15531599	3	16.0	3	82	4	62	34	4	2	59	1.28
15532031--15532382	148	2.4	140	83	10	433	40	3	9	45	1.56
15548200--15548251	22	2.4	22	77	6	52	73	11	7	7	1.26
15559844--15559893	21	2.4	20	87	12	66	70	2	8	20	1.23
15559837--15559893	19	3.0	19	82	10	64	70	1	7	21	1.20
15565480--15565516	19	1.9	19	94	0	65	43	5	0	51	1.24
15568385--15568418	18	1.9	17	88	5	50	23	11	8	55	1.63
15572155--15572207	26	2.0	26	100	0	106	30	18	7	43	1.78
15575897--15575955	3	20.7	3	80	16	72	72	0	27	0	0.84
15575890--15575955	6	11.0	6	78	12	55	72	1	25	0	0.93
15575890--15575955	18	3.6	17	88	10	87	72	1	25	0	0.93
15575897--15575955	24	2.5	24	88	5	93	72	0	27	0	0.84
15576362--15576399	17	2.2	17	95	0	67	21	13	13	52	1.73
15579028--15579148	39	3.1	39	73	9	129	21	15	22	40	1.91
15578950--15579148	78	2.6	78	84	3	240	23	15	21	39	1.91
15579210--15579292	42	2.0	42	90	4	132	19	40	18	21	1.91
15585684--15585715	12	2.7	12	90	0	55	40	34	12	12	1.81
15589179--15589254	10	7.5	10	75	7	64	34	1	25	39	1.64
15589178--15589254	20	3.8	20	72	8	75	35	1	24	38	1.64
15589178--15589255	30	2.6	30	83	6	95	34	1	24	39	1.64
15590456--15590498	6	7.3	6	89	5	70	53	0	30	16	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15591027--15591067	21	1.9	22	85	5	57	12	48	17	21	1.79
15592963--15593039	32	2.3	34	84	8	106	63	6	3	25	1.36
15593573--15593641	29	2.4	28	81	13	70	68	5	1	24	1.20
15593667--15593880	30	7.2	29	77	6	178	35	6	21	35	1.80
15593667--15593880	89	2.4	90	85	6	274	35	6	21	35	1.80
15594481--15594532	26	2.0	27	92	3	88	67	5	0	26	1.13
15594460--15594532	37	1.9	38	86	2	103	64	5	0	30	1.16
15594660--15594772	44	2.5	44	82	1	127	69	15	5	9	1.34
15594748--15594848	21	4.9	21	70	11	66	70	14	2	11	1.28
15594691--15594783	44	2.1	44	81	0	105	69	16	4	9	1.31
15594769--15594812	19	2.3	19	80	0	52	72	11	4	11	1.25
15595694--15595718	10	2.5	10	100	0	50	28	0	0	72	0.86
15597740--15597783	23	2.0	22	86	4	61	45	11	0	43	1.40
15598237--15598425	39	4.8	39	72	12	129	24	16	25	32	1.96
15598218--15598424	79	2.6	79	90	0	308	25	15	26	32	1.95
15598513--15598622	50	2.2	50	80	3	123	21	21	21	34	1.97
15605861--15606299	32	13.8	32	87	1	578	26	18	16	38	1.92
15607092--15607228	65	2.1	65	90	2	222	30	23	32	13	1.93
15608873--15608902	14	2.1	14	93	0	51	36	16	16	30	1.91
15609064--15609099	18	1.9	19	88	5	56	55	5	0	38	1.23
15609114--15609162	2	25.0	2	95	4	91	48	0	0	51	1.00
15612028--15612074	15	2.9	17	81	9	62	55	0	6	38	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15613804--15613842	16	2.4	16	91	0	60	51	5	7	35	1.53
15623445--15623484	21	1.9	21	89	0	62	40	50	10	0	1.36
15627872--15627903	16	2.0	16	93	0	55	34	0	28	37	1.57
15628214--15628278	30	2.2	30	88	0	94	56	16	3	23	1.54
15628810--15628842	17	2.0	17	88	5	50	42	3	3	51	1.32
15628945--15628997	18	2.9	18	78	13	56	37	3	0	58	1.16
15629765--15629818	19	2.9	19	76	13	58	62	1	0	35	1.06
15631966--15631997	16	2.0	16	93	0	55	53	3	18	25	1.59
15632462--15632700	52	4.6	52	93	0	415	25	15	24	34	1.95
15637808--15637847	22	1.9	22	85	10	57	52	7	27	12	1.66
15639376--15639426	24	2.1	24	88	0	75	54	11	9	23	1.66
15641355--15641419	24	2.7	24	78	0	76	47	6	16	29	1.71
15650744--15650790	20	2.3	21	81	7	60	42	0	40	17	1.49
15652528--15652562	18	2.0	17	88	5	52	51	22	5	20	1.68
15653878--15653969	32	3.0	31	73	26	90	34	4	1	59	1.24
15653899--15653935	18	2.0	19	89	5	58	37	0	0	62	0.96
15654325--15654352	6	4.7	6	100	0	56	85	0	14	0	0.59
15655472--15655538	29	2.3	28	75	10	64	41	14	8	34	1.78
15661886--15661946	20	3.1	20	75	11	63	60	0	0	39	0.97
15661899--15661950	26	2.1	24	85	7	68	63	0	0	36	0.95
15662321--15662391	6	11.8	6	95	0	106	0	56	0	43	0.99
15662321--15662391	4	17.8	4	91	0	106	0	56	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15665355--15665393	9	4.3	9	86	0	51	48	5	7	38	1.54
15665355--15665393	18	2.2	18	95	0	69	48	5	7	38	1.54
15665502--15665540	19	2.2	19	86	9	55	64	7	0	28	1.21
15666925--15666976	24	2.2	24	82	0	59	55	7	5	30	1.52
15668896--15668941	24	1.9	24	90	0	74	58	6	2	32	1.36
15669243--15669298	27	2.0	28	82	3	69	33	16	1	48	1.56
15674845--15674966	52	2.3	53	75	12	126	53	8	3	35	1.47
15678829--15679143	82	3.8	80	77	8	303	41	12	13	33	1.80
15678820--15679128	165	1.9	165	81	6	385	43	12	13	30	1.81
15679590--15679683	6	15.8	6	69	17	63	39	2	3	55	1.28
15679603--15679682	17	4.9	17	84	9	94	37	2	2	57	1.26
15679589--15679644	28	2.0	29	89	3	87	37	1	3	57	1.27
15679624--15679682	31	1.9	31	92	0	100	38	3	1	55	1.26
15679597--15679676	11	6.9	11	72	10	52	37	2	2	57	1.26
15680489--15680520	16	2.0	16	93	0	55	53	0	0	46	1.00
15680496--15680560	19	3.3	19	80	16	71	52	1	1	44	1.19
15680496--15680560	18	3.3	19	80	10	69	52	1	1	44	1.19
15680908--15680963	21	2.7	20	78	13	60	66	1	25	7	1.27
15681654--15681725	30	2.4	30	81	9	76	38	20	5	34	1.76
15681682--15682315	117	5.4	115	88	3	776	34	29	2	33	1.71
15681739--15682316	29	19.8	28	70	19	228	34	29	2	33	1.71
15681709--15682351	59	11.0	58	83	5	733	33	29	3	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15684540--15684583	22	2.0	22	100	0	88	50	13	18	18	1.79
15694189--15694780	76	7.8	76	93	1	938	32	15	18	33	1.92
15695048--15695141	6	15.8	6	69	17	63	39	2	3	55	1.28
15695061--15695140	17	4.9	17	84	9	94	37	2	2	57	1.26
15695047--15695102	28	2.0	29	89	3	87	37	1	3	57	1.27
15695082--15695140	31	1.9	31	92	0	100	38	3	1	55	1.26
15695055--15695134	11	6.9	11	72	10	52	37	2	2	57	1.26
15695952--15696015	16	3.7	16	76	15	65	53	1	1	43	1.19
15696850--15696875	11	2.4	11	100	0	52	26	0	0	73	0.84
15696859--15696909	23	2.2	24	82	3	59	39	7	0	52	1.30
15697020--15697478	30	15.6	28	68	19	235	35	28	2	33	1.70
15697080--15697689	59	10.4	58	85	3	733	33	28	2	35	1.71
15697080--15697689	177	3.5	177	88	1	859	33	28	2	35	1.71
15697228--15697673	29	15.2	28	68	21	152	33	28	2	35	1.71
15702429--15702454	13	2.0	13	100	0	52	46	0	0	53	1.00
15702428--15702460	13	2.4	14	85	15	50	45	0	6	48	1.27
15704146--15704189	20	2.3	19	84	4	52	36	2	9	52	1.46
15708226--15708301	25	3.0	25	77	11	91	25	18	23	32	1.97
15708226--15708299	26	2.9	25	78	11	87	25	18	21	33	1.96
15708226--15708318	26	3.7	24	74	16	80	26	18	22	32	1.97
15708974--15709026	21	2.5	21	81	6	63	24	15	26	33	1.95
15711948--15712054	24	4.5	24	93	0	178	29	23	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15718029--15718139	49	2.3	49	85	0	141	27	28	18	24	1.98
15722883--15722923	17	2.4	17	95	0	73	51	7	31	9	1.62
15730305--15730421	40	2.9	39	74	2	108	29	16	20	34	1.94
15731593--15731647	20	2.6	22	83	13	64	30	36	9	23	1.86
15734153--15734259	54	2.0	54	100	0	214	44	17	13	24	1.84
15737238--15737344	54	2.0	54	98	0	205	44	18	13	23	1.85
15740359--15740418	30	2.0	30	87	6	86	30	20	13	36	1.90
15741564--15741632	29	2.4	30	81	13	74	37	1	23	37	1.64
15741660--15741773	30	3.8	30	77	9	117	36	1	24	36	1.66
15741672--15741798	60	2.1	59	82	7	150	34	3	22	39	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163