genome.fa.s8.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  102  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28989723--28989829	46	2.2	48	81	6	119	44	17	9	28	1.80
29008360--29008405	22	2.1	22	91	0	74	78	0	2	19	0.86
29009997--29011724	859	2.0	860	82	2	2114	33	17	17	31	1.93
29022697--29022733	17	2.2	17	90	0	56	21	21	5	51	1.68
29026507--29026540	17	2.0	17	94	0	59	14	14	0	70	1.17
29039865--29039908	23	2.0	22	86	4	61	38	0	15	45	1.47
29052989--29053032	3	14.7	3	90	0	70	65	2	0	31	1.05
29058517--29058554	18	2.2	18	85	4	51	50	5	13	31	1.63
29059536--29059910	191	1.9	193	88	4	560	31	12	12	43	1.80
29074835--29074913	32	2.5	32	91	0	131	41	10	11	36	1.75
29085681--29085734	16	3.6	16	67	23	53	38	18	25	16	1.92
29087028--29087059	12	2.7	12	95	0	55	18	0	34	46	1.49
29099028--29099097	29	2.5	27	80	13	79	71	4	4	20	1.20
29099872--29100039	30	5.5	30	82	4	167	41	21	2	35	1.66
29099913--29100028	62	1.9	61	87	1	169	39	25	1	32	1.66
29099873--29100097	30	7.5	31	78	6	122	37	23	2	36	1.69
29105998--29106060	3	21.3	3	76	20	62	71	0	28	0	0.86
29105997--29106058	9	7.0	9	80	9	74	72	0	27	0	0.85
29109077--29109123	16	2.8	16	81	12	51	46	2	14	36	1.57
29119928--29119991	24	2.6	24	76	9	67	50	15	15	18	1.79
29119817--29120245	92	4.7	92	74	7	306	44	13	19	23	1.86
29127503--29127533	12	2.6	12	94	0	53	29	32	9	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29135802--29135830	2	14.5	2	100	0	58	0	51	0	48	1.00
29137024--29137058	18	1.9	18	88	0	52	65	0	0	34	0.93
29137003--29137058	26	2.1	27	83	9	71	60	1	1	35	1.17
29137837--29137877	21	2.1	19	86	9	55	41	12	17	29	1.85
29138737--29138934	87	2.3	87	78	1	209	35	12	21	30	1.91
29143039--29143083	19	2.3	20	78	17	51	37	2	4	55	1.32
29143894--29143940	21	2.2	21	88	3	67	17	12	2	68	1.31
29146415--29146630	108	2.0	108	96	0	396	39	14	13	32	1.85
29146790--29146845	4	13.8	4	78	17	62	17	3	0	78	0.89
29147637--29147829	104	1.9	101	82	5	244	35	14	24	25	1.94
29149229--29149278	16	3.2	15	80	8	64	16	10	0	74	1.08
29195405--29195472	30	2.3	30	82	9	79	44	1	2	51	1.25
29195950--29196006	27	2.0	27	80	12	62	45	1	3	49	1.29
29197045--29197101	18	3.1	18	83	16	57	33	1	1	63	1.15
29197066--29197101	18	2.0	19	89	10	58	36	0	0	63	0.94
29200328--29200360	15	2.1	16	88	5	50	33	0	9	57	1.30
29201455--29201480	3	8.7	3	100	0	52	30	0	0	69	0.89
29212627--29212674	24	2.0	24	95	0	87	25	18	8	47	1.76
29212629--29212682	24	2.2	24	83	6	65	27	22	7	42	1.80
29216760--29216784	4	6.2	4	100	0	50	24	0	24	52	1.48
29220822--29220899	26	3.0	26	75	7	77	71	3	6	17	1.22
29220960--29221017	19	2.9	19	71	5	53	68	6	3	20	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29220959--29221000	15	2.8	15	82	10	50	73	7	2	16	1.15
29221080--29221190	49	2.3	50	82	7	138	17	14	21	46	1.83
29221120--29221439	98	3.3	96	76	13	316	20	22	16	40	1.92
29221108--29221437	49	6.8	49	70	12	187	20	21	16	40	1.91
29222497--29222522	3	8.7	3	100	0	52	0	30	0	69	0.89
29224512--29225037	265	2.0	265	89	0	811	30	21	15	32	1.94
29224751--29225747	333	3.0	330	91	0	1616	32	18	16	32	1.93
29224754--29225747	330	3.0	329	90	1	1553	32	18	16	32	1.93
29227415--29227444	15	2.1	15	93	6	53	16	0	0	83	0.65
29229915--29229950	2	18.0	2	100	0	72	50	0	0	50	1.00
29233522--29233650	23	5.5	23	78	7	134	11	20	20	46	1.82
29234699--29234743	20	2.3	21	85	11	60	48	15	6	28	1.70
29235543--29235603	22	2.8	22	70	22	56	60	8	6	24	1.49
29235995--29236028	8	4.2	8	88	11	52	85	0	0	14	0.60
29235989--29236028	16	2.5	16	84	12	55	82	0	2	15	0.77
29235978--29236027	19	2.4	22	87	12	70	82	2	2	14	0.86
29236082--29236162	19	4.2	19	71	7	65	70	6	1	22	1.17
29236185--29236238	27	2.0	27	92	0	90	37	29	18	14	1.91
29238857--29238898	17	2.3	18	84	15	52	54	2	4	38	1.34
29239598--29239654	30	1.9	30	85	0	78	29	15	8	45	1.77
29239608--29239677	32	2.3	30	82	5	86	28	15	10	45	1.78
29239900--29240073	60	2.9	59	79	7	172	51	11	14	22	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29240151--29240205	2	28.0	2	88	3	85	47	0	1	50	1.11
29240213--29240260	19	2.6	18	83	6	51	35	4	2	58	1.29
29240224--29240277	18	3.1	17	78	7	63	29	3	3	62	1.29
29240369--29240416	22	2.0	24	84	11	64	50	2	8	39	1.44
29242294--29242498	60	3.4	60	77	9	211	36	21	4	36	1.75
29242303--29242498	90	2.2	90	82	5	227	37	20	4	36	1.74
29242294--29242519	30	7.6	30	72	9	167	34	22	5	37	1.78
29246632--29247218	49	11.9	50	69	9	210	35	17	28	18	1.94
29246632--29247170	99	5.5	98	80	5	529	36	17	28	18	1.93
29246653--29247170	49	10.6	49	68	12	224	36	16	28	18	1.93
29247388--29247683	114	2.6	114	84	2	371	35	16	23	24	1.95
29249431--29249539	30	3.6	30	75	4	94	34	23	8	33	1.85
29249547--29249697	60	2.5	59	80	6	169	29	23	7	39	1.83
29249553--29249696	30	4.8	30	79	4	132	31	22	7	38	1.82
29271091--29271322	116	2.0	116	96	0	428	43	17	9	30	1.80
29273993--29274042	24	2.1	24	100	0	100	48	14	4	34	1.62
29287518--29287555	6	6.3	6	90	0	58	21	13	13	52	1.73
29292694--29292993	154	1.9	154	94	0	528	32	14	16	37	1.88
29293435--29293495	28	2.1	28	81	3	68	24	6	29	39	1.80
29293509--29293658	29	5.2	29	65	20	71	38	0	27	34	1.62
29293475--29293816	59	5.8	59	88	4	476	35	1	27	35	1.66
29293475--29293816	116	2.9	116	88	3	472	35	1	27	35	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29293476--29293795	175	1.8	176	90	0	516	36	1	27	35	1.65
29293534--29293816	29	9.6	28	66	21	118	34	1	27	35	1.66
29293744--29293912	86	2.0	85	83	6	216	34	1	28	34	1.68
29293803--29293912	27	3.9	28	72	10	98	33	1	30	34	1.68
29294888--29294960	26	3.0	23	74	16	58	41	1	2	54	1.23
29295714--29295768	11	5.1	11	80	4	58	56	5	0	38	1.23
29295714--29295768	21	2.5	22	85	2	67	56	5	0	38	1.23
29295968--29296001	12	2.8	12	81	0	50	17	14	8	58	1.61
29296207--29296252	20	2.2	22	80	11	60	43	4	8	43	1.55
29296217--29296261	21	2.2	20	88	4	63	46	4	4	44	1.43
29302980--29303011	2	16.0	2	100	0	64	0	0	50	50	1.00
29303733--29303786	18	3.0	18	94	0	90	24	0	35	40	1.55
29318119--29318164	8	5.8	8	94	0	65	43	17	39	0	1.49
29318119--29318162	16	2.8	16	92	0	79	43	18	38	0	1.50
29319173--29319202	3	10.0	3	100	0	60	33	0	0	66	0.92
29328330--29328384	21	2.6	21	85	2	74	65	3	0	30	1.10
29330143--29330198	24	2.3	24	81	0	67	48	3	14	33	1.61
29330460--29330506	22	2.1	23	92	4	78	48	23	8	19	1.75
29332300--29332356	23	2.5	23	79	0	69	45	21	19	14	1.85
29334953--29335011	24	2.5	24	91	0	100	52	10	11	25	1.69
29335253--29335313	25	2.4	25	78	8	61	55	6	1	36	1.36
29342741--29342793	23	2.2	24	90	6	90	52	15	11	20	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29350895--29350999	53	2.0	53	83	5	135	21	9	8	60	1.55
29354256--29354490	36	6.6	36	78	5	217	36	20	17	25	1.94
29354256--29354490	107	2.2	108	87	1	337	36	20	17	25	1.94
29360113--29360154	17	2.5	17	84	3	59	40	2	2	54	1.26
29360124--29360178	6	9.7	6	75	11	53	41	0	5	52	1.24
29360093--29360197	45	2.3	45	83	6	124	39	1	4	54	1.33
29360127--29360201	11	6.8	11	75	15	59	44	0	4	52	1.20
29360113--29360201	28	3.2	28	81	10	87	42	1	3	52	1.25
29361790--29361814	10	2.5	10	100	0	50	20	52	20	8	1.71
29362192--29362425	29	7.9	29	75	9	181	38	24	2	35	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163