genome.fa.s8.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  60  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15219885--15220074	81	2.3	80	84	4	238	41	25	15	16	1.88
15240392--15240728	32	10.3	32	82	4	307	35	15	17	31	1.91
15240420--15240728	96	3.1	96	83	3	339	35	15	17	31	1.92
15243154--15243200	16	2.9	16	84	6	60	72	0	2	25	0.96
15246621--15246653	11	3.0	11	90	0	57	63	3	0	33	1.10
15259876--15259950	24	3.1	24	81	9	89	28	22	21	28	1.99
15259931--15259980	25	2.0	26	92	4	84	22	14	22	42	1.88
15262905--15262956	21	2.5	21	90	0	77	7	44	21	26	1.79
15263788--15264093	32	9.6	32	85	0	198	34	15	17	33	1.91
15263788--15264093	64	4.8	64	84	0	396	34	15	17	33	1.91
15263817--15264092	96	2.9	96	87	1	392	34	15	17	33	1.91
15290222--15290277	29	1.9	29	92	0	94	33	16	12	37	1.86
15291028--15291057	15	1.9	16	93	6	53	26	0	16	56	1.40
15301990--15302020	11	2.8	11	100	0	62	29	38	6	25	1.81
15302744--15302803	31	1.9	31	83	6	77	31	0	6	61	1.22
15302715--15302794	20	3.9	20	75	8	63	37	0	3	58	1.16
15303467--15303537	20	3.5	20	84	9	83	35	0	8	56	1.30
15304019--15304093	29	2.6	29	89	2	98	26	17	12	44	1.83
15304030--15304147	28	4.1	28	79	8	110	22	18	11	46	1.82
15304700--15304809	55	2.0	56	82	7	134	29	19	14	37	1.91
15304793--15305047	59	4.3	59	81	4	266	31	16	13	38	1.87
15304774--15305047	118	2.3	117	80	8	297	30	17	13	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15305108--15305252	59	2.5	58	79	9	159	24	19	17	37	1.93
15305980--15306016	13	3.0	13	84	11	51	64	0	0	35	0.94
15307736--15307785	12	3.8	12	78	19	55	54	0	6	40	1.25
15307905--15307981	34	2.2	35	90	9	129	51	5	1	41	1.32
15307942--15308666	86	8.5	86	93	2	1194	43	6	4	45	1.49
15307942--15308666	171	4.2	171	93	1	1197	43	6	4	45	1.49
15307942--15308666	257	2.8	256	92	2	1197	43	6	4	45	1.49
15308754--15308809	22	2.5	23	80	8	71	35	44	3	16	1.65
15309695--15309731	17	2.1	17	90	5	56	27	0	0	72	0.84
15309848--15309890	20	2.3	18	84	8	50	20	9	4	65	1.40
15310558--15310612	24	2.3	25	78	9	60	25	41	29	3	1.72
15310570--15310610	12	3.4	12	82	0	55	21	46	29	2	1.64
15311159--15311215	17	3.5	17	70	20	50	26	8	3	61	1.42
15311118--15311225	30	3.6	30	85	1	117	26	5	3	63	1.33
15312035--15312362	108	3.0	110	78	12	318	39	14	15	30	1.88
15312144--15312429	59	4.8	57	76	10	263	37	15	17	29	1.91
15315963--15316182	60	3.7	59	83	5	255	25	16	10	47	1.78
15315971--15316206	119	2.0	119	81	4	278	26	16	9	47	1.77
15316431--15316538	31	3.5	31	71	9	96	47	12	17	23	1.81
15318180--15318267	25	3.5	25	84	0	104	25	18	22	34	1.96
15320012--15320063	27	1.9	27	88	0	77	23	11	23	42	1.86
15323567--15323621	26	2.1	27	82	3	67	47	25	5	21	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15329507--15329570	24	2.7	24	85	2	85	26	10	17	45	1.81
15332806--15332895	28	3.3	27	78	6	83	50	28	1	20	1.55
15338270--15338317	2	24.0	2	100	0	96	50	0	0	50	1.00
15354089--15354152	26	2.6	25	73	11	60	67	6	0	26	1.14
15354353--15354383	11	2.9	11	95	4	55	74	9	0	16	1.07
15355566--15355593	3	9.3	3	100	0	56	67	0	0	32	0.91
15358238--15358515	81	3.4	81	74	13	237	33	11	10	44	1.75
15364217--15364488	29	9.3	29	77	13	222	36	27	1	34	1.66
15364249--15364478	58	3.9	57	81	10	252	36	28	1	33	1.66
15364267--15364479	116	1.8	117	86	5	315	35	29	1	33	1.67
15364218--15364488	87	3.1	87	80	9	286	36	27	1	33	1.66
15365736--15365781	19	2.3	20	82	14	60	2	17	13	67	1.33
15367609--15368155	50	11.0	50	73	7	337	35	17	31	15	1.92
15367609--15368170	99	5.7	100	76	6	419	35	17	30	15	1.92
15367903--15368135	49	4.7	49	76	2	198	33	18	33	14	1.91
15367806--15368177	148	2.5	147	76	6	385	35	18	31	14	1.91
15369194--15369240	3	15.7	3	100	0	94	68	0	0	31	0.90
15370340--15370565	87	2.6	86	81	6	251	38	26	2	32	1.71
15370340--15370575	58	4.1	57	77	13	214	38	27	2	32	1.70
15370253--15370565	29	10.7	29	78	11	191	36	26	2	34	1.71
15371724--15371769	13	3.3	14	80	14	51	58	2	2	36	1.22
15373190--15373219	9	3.3	9	90	0	51	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15386412--15386499	30	2.9	29	83	5	95	30	7	15	45	1.75
15392109--15392154	19	2.3	20	78	14	51	50	6	2	41	1.40
15400247--15400292	19	2.3	20	78	14	51	50	6	2	41	1.40
15410801--15411136	45	7.5	46	81	5	368	25	15	25	33	1.95
15410614--15411135	42	12.0	43	77	10	331	25	16	24	33	1.96
15410780--15411128	135	2.6	134	84	2	436	24	16	24	34	1.95
15411244--15411669	95	4.5	95	69	13	254	25	26	16	31	1.96
15411233--15411742	93	5.4	94	68	13	269	24	26	17	31	1.97
15411238--15411745	188	2.7	188	82	3	637	24	26	17	31	1.97
15412890--15412956	10	6.9	10	75	14	61	0	17	0	82	0.68
15412887--15412970	8	10.5	8	76	19	77	2	14	0	83	0.75
15412890--15412962	26	2.9	26	84	10	89	1	16	0	82	0.75
15412900--15412968	22	2.9	23	73	21	52	2	14	0	82	0.78
15412892--15412970	34	2.4	33	85	10	99	2	13	0	83	0.75
15425058--15425120	28	2.2	28	91	0	99	52	1	6	39	1.37
15428690--15428728	17	2.2	18	90	9	62	30	0	0	69	0.89
15429077--15429141	27	2.5	26	80	14	80	69	0	0	30	0.89
15429110--15429147	15	2.4	16	86	4	51	65	0	0	34	0.93
15429100--15429147	16	3.1	15	80	14	53	68	0	0	31	0.90
15429076--15429151	27	2.8	26	77	20	75	67	0	0	32	0.91
15429431--15429490	28	2.1	29	84	9	79	51	0	1	46	1.10
15436124--15436161	18	2.1	18	90	0	58	28	26	26	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15437614--15437649	14	2.6	14	90	0	54	16	2	69	11	1.29
15437808--15437867	30	2.0	30	93	0	102	36	0	43	20	1.52
15440695--15440739	6	7.5	6	87	0	63	46	2	31	20	1.62
15446194--15446232	6	6.5	6	84	0	51	46	2	30	20	1.64
15455544--15455669	62	2.0	62	98	0	243	33	21	17	27	1.96
15470003--15470039	19	1.9	19	89	10	58	48	0	29	21	1.50
15473711--15473736	13	2.0	13	100	0	52	30	0	46	23	1.53
15478270--15478299	15	1.9	16	93	6	53	40	0	0	60	0.97
15485026--15485125	49	2.0	49	88	3	148	39	17	23	21	1.92
15485132--15485300	45	3.7	44	79	8	167	30	21	28	18	1.97
15485655--15485785	44	2.9	43	80	10	138	35	21	19	24	1.96
15497177--15497210	17	2.0	17	100	0	68	29	35	5	29	1.81
15497177--15497215	17	2.5	15	88	12	53	28	33	5	33	1.79
15501226--15501289	24	2.7	24	95	0	110	35	6	10	46	1.64
15501238--15501282	14	3.5	14	74	22	53	37	6	8	46	1.61
15501854--15502033	43	4.2	43	81	5	190	23	28	22	25	1.99
15501896--15502033	43	3.2	43	88	1	206	23	28	21	26	1.99
15501854--15502033	85	2.1	85	83	4	220	23	28	22	25	1.99
15502008--15502050	17	2.5	17	96	0	77	18	39	20	20	1.93
15501965--15502093	59	2.1	61	90	2	199	19	31	23	25	1.98
15502164--15502192	15	1.9	15	100	0	58	48	34	3	13	1.60
15502409--15502562	66	2.3	66	89	0	236	15	24	16	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15503890--15504179	112	2.5	116	84	5	358	41	1	4	52	1.33
15504090--15504116	4	6.8	4	100	0	54	25	0	0	74	0.83
15504059--15504213	50	3.0	50	77	10	134	40	1	3	54	1.27
15508594--15508815	41	5.4	40	90	3	318	14	35	23	25	1.94
15508636--15508793	24	7.5	23	60	27	64	13	36	25	24	1.92
15508594--15508815	123	1.8	123	90	2	356	14	35	23	25	1.94
15511111--15511151	7	5.9	7	100	0	82	0	70	0	29	0.87
15519663--15519767	53	2.0	53	90	3	167	51	1	19	27	1.57
15527212--15527252	18	2.2	19	87	12	59	46	4	7	41	1.53
15528247--15528428	40	4.6	40	85	1	197	29	18	24	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163