genome.fa.s8.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  126  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34683818--34683888	28	2.5	28	76	13	74	25	19	28	26	1.99
34685877--34685917	21	2.0	21	85	0	55	19	12	4	63	1.46
34692493--34692525	17	1.9	17	100	0	66	15	30	0	54	1.41
34696918--34696960	24	1.9	21	86	13	59	2	25	6	65	1.30
34698356--34698388	17	1.9	17	100	0	66	54	3	30	12	1.52
34726716--34727149	217	2.0	214	92	1	724	37	19	13	29	1.90
34727528--34727569	3	14.0	3	100	0	84	66	0	0	33	0.92
34733643--34733715	37	2.0	37	89	5	112	35	20	16	27	1.94
34735919--34735975	26	2.1	28	87	6	82	33	24	28	14	1.94
34736060--34736123	30	2.1	30	85	8	85	54	6	0	39	1.26
34736087--34736159	36	2.1	35	87	7	103	46	4	2	46	1.36
34736548--34736595	19	2.5	21	83	12	59	31	0	2	66	1.03
34739459--34739506	7	6.7	7	78	4	51	20	2	25	52	1.58
34739710--34739755	21	2.2	21	84	0	56	23	13	36	26	1.91
34742220--34742248	13	2.3	13	94	5	51	44	0	0	55	0.99
34742603--34742631	12	2.3	13	88	11	51	65	0	0	34	0.93
34742663--34742712	4	13.5	4	80	19	56	0	20	0	80	0.72
34742659--34742712	22	2.4	23	82	11	69	0	22	0	77	0.76
34751911--34751935	2	12.5	2	100	0	50	48	0	0	52	1.00
34762200--34762386	81	2.3	81	83	3	234	25	22	16	35	1.95
34762200--34762386	27	6.9	27	81	2	196	25	22	16	35	1.95
34762355--34762598	123	2.0	122	91	0	398	22	22	19	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34765228--34765282	17	3.2	17	84	5	67	61	1	3	32	1.24
34765533--34765558	13	2.0	13	100	0	52	38	0	7	53	1.30
34766403--34766474	36	2.0	36	86	5	101	44	6	6	41	1.58
34767384--34767432	24	2.1	23	85	11	64	55	6	2	36	1.37
34772430--34772459	15	2.0	15	93	0	51	80	0	10	10	0.92
34774667--34775123	128	3.6	129	86	3	595	25	19	27	27	1.99
34775471--34775575	40	2.6	40	78	0	111	40	18	18	23	1.91
34784914--34784973	24	2.5	24	83	2	77	20	15	15	50	1.79
34785070--34785133	24	2.7	24	95	0	110	32	9	12	45	1.74
34786349--34786391	20	2.1	21	86	4	61	32	23	16	27	1.96
34787142--34787246	40	2.6	40	77	5	124	36	19	30	14	1.91
34787142--34787243	20	5.1	20	71	0	87	36	18	30	14	1.91
34795237--34795342	36	2.9	36	88	2	149	35	12	28	23	1.91
34798847--34798879	17	1.9	17	88	11	50	45	6	24	24	1.75
34811681--34811739	31	2.0	29	83	6	73	44	15	8	32	1.76
34814836--34814880	22	2.0	23	83	12	58	40	0	2	57	1.11
34814930--34815054	57	2.2	57	100	0	250	44	15	17	23	1.86
34821479--34821593	39	2.9	39	89	1	158	23	19	23	33	1.97
34821877--34822060	73	2.5	73	79	6	178	25	29	16	28	1.96
34828081--34828317	51	4.6	51	90	0	357	32	13	24	29	1.94
34830599--34830721	39	3.2	39	72	15	110	25	14	19	40	1.89
34830571--34830821	78	3.2	78	76	9	226	24	15	21	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34830612--34830788	39	4.5	39	81	0	201	24	15	19	40	1.90
34831061--34831231	73	2.3	73	79	2	173	25	29	16	28	1.97
34832221--34832278	24	2.3	24	82	11	64	39	3	0	56	1.16
34833603--34833711	40	2.7	41	77	7	105	55	0	0	44	1.06
34833651--34833709	23	2.4	24	80	8	66	57	0	0	42	0.98
34833945--34833996	24	2.2	24	89	0	77	36	1	7	53	1.41
34836033--34836059	7	3.9	7	100	0	54	0	0	14	85	0.61
34836447--34836550	17	6.2	17	77	2	104	44	1	1	51	1.23
34836456--34836538	6	14.7	6	70	12	59	44	2	2	50	1.28
34836462--34836550	34	2.6	34	96	1	162	44	2	2	50	1.26
34836779--34836841	25	2.5	25	84	0	81	22	49	11	17	1.78
34838522--34838680	59	2.7	59	81	5	196	33	23	4	37	1.75
34838566--34838910	58	5.9	59	83	8	282	32	26	4	36	1.75
34838654--34838905	58	4.3	59	88	3	375	32	26	3	36	1.75
34838566--34838871	29	10.5	29	71	19	169	32	25	4	38	1.75
34838522--34838872	29	12.0	29	71	17	140	32	25	4	37	1.75
34838625--34838906	29	9.7	27	72	20	128	32	27	3	36	1.74
34838654--34838929	117	2.4	116	86	4	349	32	26	3	36	1.75
34848816--34848936	30	4.1	30	72	11	106	37	20	3	38	1.69
34848835--34848966	59	2.2	59	82	1	147	36	21	3	38	1.69
34848860--34849057	30	6.8	29	73	15	104	34	25	4	34	1.77
34848949--34849256	58	5.2	57	84	6	375	33	26	4	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34848948--34849226	29	9.6	27	71	20	163	33	27	3	35	1.75
34848949--34849256	116	2.6	118	87	4	435	33	26	4	36	1.76
34855406--34855520	29	4.0	27	82	10	113	32	4	29	33	1.77
34855435--34855750	30	10.6	30	78	8	297	36	3	24	34	1.74
34855401--34855693	59	5.0	58	80	6	279	35	3	26	35	1.72
34855372--34855698	30	11.1	28	79	9	243	34	3	27	34	1.74
34855435--34855750	59	5.3	59	79	7	268	36	3	24	34	1.74
34857324--34857400	17	4.5	17	81	3	91	57	5	1	36	1.30
34857324--34857400	35	2.2	34	88	2	109	57	5	1	36	1.30
34857324--34857371	6	8.3	6	80	17	57	54	2	2	41	1.24
34857795--34858405	39	15.7	39	69	9	289	27	21	28	22	1.99
34857847--34858366	78	6.7	77	81	2	533	28	20	28	22	1.99
34857795--34858393	78	7.7	75	75	11	372	27	22	28	22	1.99
34858008--34858439	117	3.7	116	70	6	334	27	21	28	22	1.99
34858378--34858499	60	2.0	60	85	0	163	25	22	29	22	1.99
34858438--34858778	78	4.4	78	84	0	385	26	19	29	24	1.99
34858273--34858608	177	1.9	176	80	7	385	27	21	28	22	1.99
34858645--34858857	117	1.8	113	83	9	279	28	17	27	26	1.98
34858436--34858876	39	11.3	40	71	9	180	27	19	28	25	1.99
34861114--34861157	3	15.0	3	95	4	81	0	31	0	68	0.90
34866783--34866814	14	2.3	14	100	0	64	37	28	6	28	1.81
34869438--34869756	30	10.8	29	78	9	295	35	2	22	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34871355--34871421	6	11.7	6	78	15	70	55	2	1	40	1.24
34871354--34871427	17	4.4	17	89	0	112	56	2	1	39	1.22
34871355--34871421	11	5.8	11	78	16	66	55	2	1	40	1.24
34871354--34871427	34	2.2	34	92	0	130	56	2	1	39	1.22
34878753--34878797	24	1.9	23	86	4	63	48	0	11	40	1.39
34882851--34882877	14	1.9	14	100	0	54	0	18	7	74	1.05
34892825--34893211	188	2.0	191	89	1	591	26	10	20	42	1.84
34894971--34895122	27	5.8	25	77	11	112	31	7	42	19	1.78
34894990--34895125	27	5.0	26	88	3	182	31	6	42	19	1.77
34898599--34898681	41	2.0	42	83	2	105	60	15	2	21	1.47
34899322--34899348	14	1.9	14	100	0	54	70	7	0	22	1.12
34900275--34900325	26	2.0	26	84	7	68	45	11	11	31	1.77
34901320--34901377	28	2.0	30	80	12	68	32	8	6	51	1.59
34901903--34902023	60	2.0	60	98	0	233	38	8	22	30	1.83
34902672--34902753	38	2.2	36	81	12	96	69	2	3	24	1.17
34902672--34902752	37	2.2	35	81	16	94	69	2	3	24	1.17
34904422--34904473	25	2.0	26	85	3	70	59	5	0	34	1.21
34904668--34904714	23	2.0	24	83	4	60	29	4	0	65	1.11
34911137--34911175	20	2.0	20	84	0	51	43	7	0	48	1.31
34916403--34916564	78	2.1	79	90	2	254	39	9	8	43	1.66
34919294--34919338	23	1.9	24	86	4	65	42	0	0	57	0.98
34919655--34919744	23	3.9	22	72	16	67	36	2	0	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34919670--34919713	20	2.3	18	88	11	70	36	0	0	63	0.95
34919722--34919760	13	3.0	13	92	0	69	43	0	0	56	0.99
34919898--34919936	21	1.9	21	89	5	62	33	20	7	38	1.81
34921873--34921926	2	27.0	2	100	0	108	50	0	0	50	1.00
34929303--34929338	18	1.9	19	88	5	56	36	0	0	63	0.94
34941264--34941453	82	2.3	83	80	7	192	34	4	13	47	1.63
34941818--34941860	16	2.7	16	88	0	68	41	4	25	27	1.75
34947413--34947451	16	2.4	17	86	4	53	28	0	0	71	0.86
34957593--34957650	31	1.9	29	86	6	80	18	15	5	60	1.53
34959122--34959202	28	2.9	27	89	5	117	27	18	3	50	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163