genome.fa.s8.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  146  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39752324--39752364	6	6.8	6	94	0	73	36	48	0	14	1.44
39752750--39752786	19	1.9	19	88	0	56	78	2	0	18	0.87
39753185--39753243	24	2.5	24	88	0	82	16	11	20	50	1.76
39753185--39753255	24	3.0	24	85	4	72	23	12	18	45	1.84
39753585--39753665	37	2.2	37	86	4	110	48	0	0	51	1.00
39753585--39753665	9	8.8	9	67	20	51	48	0	0	51	1.00
39763921--39763990	22	3.2	22	81	0	86	18	5	11	64	1.45
39763921--39763990	11	6.4	11	79	0	59	18	5	11	64	1.45
39767682--39767747	13	5.1	13	72	7	53	33	7	24	34	1.84
39767934--39767979	24	1.9	24	82	8	58	52	2	2	43	1.25
39769649--39769677	13	2.2	13	100	0	58	24	34	6	34	1.82
39774015--39774261	129	1.9	129	93	1	424	23	14	18	43	1.87
39786928--39786963	15	2.5	15	90	4	56	55	0	0	44	0.99
39789229--39789272	23	2.0	23	86	13	65	45	18	0	36	1.49
39791597--39792097	257	1.9	257	91	0	813	30	16	35	17	1.92
39792246--39792322	30	2.6	30	81	8	93	35	22	5	37	1.76
39793974--39794011	18	2.1	18	85	9	51	15	13	7	63	1.51
39795892--39796307	132	3.1	130	72	13	333	36	23	13	26	1.92
39795812--39796548	270	2.7	269	81	5	869	35	23	15	26	1.94
39804106--39804130	12	2.1	12	100	0	50	76	8	0	16	1.02
39804139--39804190	27	2.0	27	88	3	79	51	1	1	44	1.23
39804173--39804226	29	1.9	29	81	7	67	68	0	3	27	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39808679--39808743	26	2.5	27	80	9	73	47	0	0	52	1.00
39809838--39809864	12	2.2	12	100	0	54	37	0	0	62	0.95
39809854--39809919	24	2.5	27	80	9	66	43	1	1	53	1.19
39810257--39810292	15	2.3	16	90	4	56	50	2	2	44	1.31
39810325--39810359	17	2.0	18	88	5	54	62	8	0	28	1.24
39810490--39810546	30	1.9	29	85	3	78	43	15	5	35	1.70
39810935--39810978	3	14.7	3	100	0	88	31	0	0	68	0.90
39810977--39811006	3	10.0	3	100	0	60	0	0	33	66	0.92
39812179--39812212	4	8.5	4	100	0	68	50	23	0	26	1.50
39816786--39816819	17	2.1	16	89	10	52	70	0	0	29	0.87
39817464--39817508	19	2.4	18	82	13	56	46	0	6	46	1.29
39822914--39822950	10	3.7	10	92	0	56	40	27	0	32	1.57
39822917--39822950	15	2.3	15	94	0	59	41	29	0	29	1.57
39824913--39824942	15	2.0	15	93	0	51	40	16	6	36	1.75
39826019--39826065	21	2.2	21	85	7	60	40	0	2	57	1.11
39828603--39828659	23	2.6	23	81	10	66	38	3	0	57	1.16
39828751--39828793	2	21.5	2	95	0	77	53	0	46	0	1.00
39831745--39832021	30	9.4	30	65	10	140	32	7	31	29	1.84
39831745--39832060	59	5.4	59	91	0	481	32	7	30	29	1.85
39832042--39832287	30	8.2	30	90	0	375	35	3	24	36	1.72
39831745--39832120	118	3.2	117	84	7	451	32	6	29	30	1.84
39832452--39832756	160	1.9	162	84	8	415	46	14	14	24	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39834284--39834356	6	12.7	6	75	15	57	50	1	4	43	1.29
39834283--39834359	11	6.8	11	74	15	68	49	1	3	45	1.28
39834294--39834348	28	1.9	29	82	10	69	50	1	5	41	1.36
39834304--39834357	28	1.9	28	85	7	74	51	0	5	42	1.25
39834653--39835361	68	10.4	68	92	0	1139	26	19	19	35	1.95
39834653--39835361	137	5.2	137	92	1	1147	26	19	19	35	1.95
39834653--39835361	205	3.5	205	97	0	1303	26	19	19	35	1.95
39847299--39847554	117	2.2	118	90	2	399	32	8	30	29	1.86
39847307--39847554	59	4.2	59	89	4	376	33	7	28	30	1.85
39847536--39847811	30	9.2	30	91	0	426	35	4	24	35	1.76
39847899--39848244	160	2.1	163	82	7	431	44	12	15	27	1.82
39849581--39849621	20	2.0	20	85	0	55	21	19	43	14	1.87
39849664--39849702	12	3.0	13	81	11	53	15	17	28	38	1.91
39849804--39849876	6	12.7	6	75	15	57	50	1	4	43	1.29
39849803--39849879	11	6.8	11	74	15	68	49	1	3	45	1.28
39849814--39849868	28	1.9	29	82	10	69	50	1	5	41	1.36
39849824--39849877	28	1.9	28	85	7	74	51	0	5	42	1.25
39851745--39851783	19	2.1	19	90	0	60	30	15	10	43	1.80
39853333--39853538	78	2.7	76	84	9	278	48	14	10	27	1.76
39859032--39859075	23	2.0	23	86	4	63	15	13	25	45	1.83
39863631--39863718	43	2.0	43	100	0	176	40	9	0	50	1.34
39874978--39875012	16	2.2	16	89	0	52	28	0	2	68	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39875627--39875664	19	2.0	19	90	10	60	68	10	0	21	1.19
39876736--39876791	29	1.9	29	88	0	85	41	7	3	48	1.48
39877193--39877246	17	3.4	17	67	15	51	55	0	3	40	1.17
39877181--39877248	31	2.2	31	94	0	118	55	0	2	41	1.15
39877206--39877261	20	2.8	19	78	13	51	58	0	1	39	1.08
39877344--39877381	18	2.2	18	90	4	60	50	0	0	50	1.00
39877287--39877510	105	2.2	103	90	7	352	33	9	11	45	1.72
39877420--39877455	7	5.1	7	89	0	54	33	2	0	63	1.08
39877559--39877604	11	4.4	11	74	20	53	41	0	0	58	0.98
39877546--39877601	20	2.8	19	86	10	69	42	0	0	57	0.99
39877559--39877625	31	2.2	31	94	5	118	41	1	0	56	1.08
39878013--39878069	29	2.0	29	92	0	96	50	3	3	42	1.36
39886274--39886342	31	2.3	29	80	11	77	40	2	2	53	1.31
39886281--39886342	31	2.0	30	84	9	81	40	3	3	53	1.33
39903679--39903946	43	6.3	42	83	4	272	25	17	26	29	1.97
39903679--39903946	85	3.1	87	84	5	300	25	17	26	29	1.97
39903686--39903946	128	2.0	128	82	4	312	26	18	26	29	1.98
39905463--39905524	27	2.3	27	82	0	79	19	30	29	20	1.97
39905560--39905613	14	3.7	14	75	7	54	66	11	0	22	1.22
39905733--39905864	57	2.4	56	80	8	153	56	5	2	35	1.34
39906543--39906598	27	2.1	27	83	6	69	33	7	39	19	1.79
39906800--39906835	6	6.0	6	93	0	63	19	33	30	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39908809--39908856	17	2.8	17	87	6	62	58	2	2	37	1.22
39911513--39911557	20	2.1	22	88	8	67	2	55	2	40	1.24
39911924--39911970	20	2.4	20	82	10	53	27	4	0	68	1.08
39919293--39919415	23	5.3	23	83	3	122	18	18	20	42	1.90
39919294--39919429	46	3.0	46	78	3	130	17	18	20	43	1.88
39920276--39920310	17	1.9	19	88	11	56	51	5	17	25	1.67
39923590--39923967	29	13.0	28	65	23	126	31	28	3	35	1.76
39923590--39923965	58	6.4	58	82	6	431	31	28	3	35	1.76
39923874--39923965	28	3.2	28	68	27	84	30	30	2	36	1.70
39923590--39923966	117	3.2	115	83	5	483	31	28	3	36	1.76
39931179--39931274	30	3.2	30	72	19	101	32	4	30	33	1.77
39931147--39931408	59	4.5	58	80	7	307	34	3	29	32	1.75
39931123--39931407	29	9.8	28	71	22	139	35	3	27	33	1.74
39934691--39934725	17	1.9	19	88	11	56	25	17	5	51	1.67
39935586--39935707	23	5.3	23	84	0	127	42	20	18	18	1.89
39935572--39935706	46	2.9	46	78	2	119	42	20	18	17	1.89
39947370--39947479	52	2.1	51	83	5	132	38	10	14	36	1.81
39954076--39954207	62	2.1	62	85	0	174	31	15	18	34	1.92
39960667--39960717	20	2.6	19	84	12	59	37	3	1	56	1.29
39960935--39960971	18	2.1	18	100	0	74	45	5	16	32	1.70
39969742--39969797	16	3.8	16	75	24	61	46	0	1	51	1.11
39969751--39969793	15	3.1	15	75	25	58	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39973675--39973729	27	2.0	27	100	0	110	21	18	27	32	1.96
39980315--39980363	16	3.2	15	80	11	55	34	0	0	65	0.93
39980888--39980951	32	2.0	32	90	0	101	18	17	18	45	1.86
39989086--39989132	24	2.0	23	87	4	67	40	2	6	51	1.39
39989935--39989976	20	2.0	21	82	13	52	61	9	0	28	1.27
39992328--39992394	31	2.2	31	86	0	89	35	17	7	38	1.78
39993238--39993269	12	2.6	13	90	9	50	53	12	0	34	1.39
39993682--39993715	3	11.3	3	100	0	68	67	0	0	32	0.91
40001412--40001446	12	2.9	12	91	0	52	11	48	2	37	1.54
40002950--40002980	15	2.1	15	94	5	55	32	16	32	19	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163