genome.fa.s4.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  100  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32250446--32250482	16	2.3	17	81	13	51	48	0	0	51	1.00
32251869--32251912	7	6.3	7	100	0	88	56	13	0	29	1.38
32252771--32252999	110	2.1	110	98	1	442	34	17	11	37	1.86
32253067--32253116	11	4.6	11	87	2	75	42	2	34	22	1.65
32264222--32264310	44	2.0	44	97	0	169	35	21	14	28	1.93
32266920--32266996	29	2.6	29	81	4	82	49	14	11	24	1.76
32268910--32268986	29	2.6	29	81	4	82	49	14	11	24	1.76
32271278--32271329	14	3.7	14	75	10	52	25	5	0	69	1.10
32271291--32271347	6	9.2	6	80	14	53	22	3	0	73	0.98
32271780--32271831	1	52.0	1	80	0	59	90	5	0	3	0.55
32271780--32271831	15	3.4	15	86	5	77	90	5	0	3	0.55
32271777--32271831	21	2.6	21	85	2	74	89	7	0	3	0.60
32271782--32271831	10	4.9	10	86	13	66	90	6	0	4	0.57
32280150--32280206	26	2.2	26	90	0	87	35	15	12	36	1.85
32288800--32288880	41	1.9	42	85	5	110	48	2	13	35	1.56
32289559--32289598	20	2.0	21	85	5	55	30	15	30	25	1.95
32302384--32302580	46	4.6	45	80	12	234	34	14	22	28	1.94
32302420--32302494	37	2.0	37	92	0	123	37	14	21	26	1.92
32302384--32302540	83	1.9	83	90	0	251	34	13	22	29	1.92
32307029--32307091	20	3.2	20	73	8	74	15	34	15	33	1.90
32307015--32307134	40	3.0	40	85	3	136	18	29	15	37	1.91
32307029--32307134	40	2.7	40	88	4	153	16	31	16	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32314930--32314961	15	2.1	15	94	0	55	28	12	21	37	1.90
32321579--32321653	23	3.2	23	69	3	60	25	10	16	48	1.78
32323878--32323919	21	2.0	21	100	0	84	33	19	19	28	1.96
32337141--32337172	7	4.4	7	96	4	55	12	0	0	87	0.54
32343411--32343479	26	2.8	25	80	4	68	15	27	20	36	1.93
32347874--32347912	5	7.8	5	97	0	69	35	20	23	20	1.96
32348310--32348349	18	2.2	18	90	0	62	30	7	12	50	1.68
32351542--32351568	3	9.0	3	100	0	54	66	0	0	33	0.92
32359874--32359924	21	2.5	20	75	12	50	66	13	11	7	1.43
32360803--32360898	21	4.7	21	77	10	108	68	3	1	27	1.11
32360986--32361358	132	2.8	132	89	2	532	52	9	13	23	1.70
32361005--32361399	132	3.0	130	82	6	436	51	10	14	23	1.72
32366231--32366270	21	1.9	22	85	10	57	72	2	10	15	1.21
32385875--32386033	53	3.0	53	85	1	221	35	13	24	26	1.92
32399260--32399303	18	2.5	17	81	7	52	47	6	13	31	1.69
32408489--32408520	9	3.4	9	95	4	55	0	12	0	87	0.54
32424585--32424609	10	2.5	10	100	0	50	24	20	8	48	1.76
32427810--32427852	23	1.9	22	81	13	52	58	0	20	20	1.40
32442783--32442826	22	2.0	21	86	4	61	45	2	27	25	1.65
32451683--32451751	32	2.2	32	82	7	88	62	1	4	31	1.24
32451692--32451751	17	3.6	16	69	22	52	58	1	5	35	1.30
32459302--32459699	131	3.0	130	80	2	476	35	14	11	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32459327--32459743	131	3.2	129	74	6	383	34	15	10	39	1.82
32464101--32464130	15	2.0	15	93	0	51	46	0	43	10	1.37
32469087--32469143	3	19.3	3	80	3	62	22	71	0	5	1.05
32469935--32469994	3	20.0	3	89	0	93	28	66	0	5	1.12
32471002--32471026	2	12.5	2	100	0	50	52	0	0	48	1.00
32478500--32478768	51	5.2	51	84	6	351	33	14	23	28	1.94
32478641--32478672	7	4.6	7	96	0	55	40	9	31	18	1.83
32478495--32478767	109	2.6	107	86	5	360	33	14	23	28	1.94
32478827--32478857	15	2.1	15	100	0	62	25	25	6	41	1.79
32482977--32483001	13	1.9	13	100	0	50	32	0	12	56	1.36
32489499--32489529	15	2.1	15	100	0	62	25	12	0	61	1.32
32491398--32491425	13	2.2	13	100	0	56	14	14	0	71	1.15
32496558--32496609	24	2.2	24	89	0	77	55	9	1	32	1.43
32499883--32500018	58	2.3	58	94	0	236	41	11	25	21	1.86
32503407--32503451	19	2.4	19	80	0	54	44	0	4	51	1.21
32503441--32503494	19	3.1	17	77	15	56	44	1	1	51	1.22
32503441--32503486	18	2.6	18	83	10	58	45	2	2	50	1.26
32503444--32503494	17	2.9	18	75	11	52	45	1	1	50	1.24
32504575--32504616	18	2.2	20	87	8	61	66	0	0	33	0.92
32505948--32506335	100	4.0	97	86	8	510	40	1	19	38	1.59
32506060--32506227	44	3.4	50	67	20	136	42	1	19	36	1.62
32506217--32506246	7	4.3	7	91	0	51	13	0	36	50	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32506406--32506820	126	3.3	126	90	0	636	34	16	20	28	1.95
32507398--32507856	243	1.9	243	91	0	756	26	20	28	24	1.99
32510246--32510301	21	2.7	21	83	5	60	8	14	41	35	1.77
32510544--32510586	18	2.4	18	88	0	59	46	6	27	18	1.75
32511216--32511248	7	4.7	7	100	0	66	57	15	0	27	1.38
32521759--32521799	16	2.5	17	88	4	57	46	12	12	29	1.77
32522758--32522786	3	9.7	3	100	0	58	68	0	0	31	0.89
32531352--32531395	22	2.0	22	95	0	79	20	22	20	36	1.95
32551620--32551652	16	2.1	16	100	0	66	36	6	33	24	1.80
32551638--32551733	45	2.2	44	90	5	149	30	4	29	36	1.76
32554271--32554374	49	2.1	49	92	0	172	50	10	8	30	1.67
32557661--32557700	21	2.0	21	95	5	73	57	20	5	17	1.58
32557705--32557731	12	2.2	12	100	0	54	59	25	7	7	1.51
32557712--32557832	45	2.7	45	94	0	206	53	19	8	18	1.69
32557717--32557957	113	2.1	113	97	0	455	55	20	7	17	1.65
32557833--32557906	17	4.8	16	67	23	59	55	20	8	16	1.66
32557761--32557900	68	2.1	68	98	0	271	55	20	7	16	1.64
32557829--32557945	45	2.6	45	100	0	234	56	20	6	16	1.63
32559237--32559262	5	5.2	5	100	0	52	80	0	19	0	0.71
32559309--32559349	17	2.3	18	87	8	57	58	7	29	4	1.46
32572936--32573042	49	2.2	48	85	8	146	6	21	8	63	1.45
32574926--32574991	29	2.4	27	84	5	78	31	21	9	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32577052--32577140	32	2.7	33	75	6	92	37	5	11	46	1.63
32578944--32578974	5	6.2	5	92	0	53	35	0	64	0	0.94
32582415--32582449	15	2.4	15	90	4	54	48	0	8	42	1.33
32583429--32583462	11	3.1	11	91	0	50	11	11	0	76	1.02
32586065--32586108	21	2.1	20	83	8	52	59	2	2	36	1.23
32590087--32590124	14	2.7	14	92	8	60	39	2	0	57	1.12
32590554--32590604	23	2.2	23	82	6	59	17	11	19	50	1.76
32591072--32591169	17	5.4	17	65	17	54	32	3	15	48	1.60
32591087--32591178	17	5.0	18	67	19	64	34	3	16	45	1.63
32591071--32591178	37	2.9	36	91	5	171	32	3	15	48	1.63
32591176--32591256	9	8.6	9	82	10	99	23	9	28	38	1.87
32591179--32591258	20	4.1	20	87	6	119	21	10	28	40	1.85
32591180--32591247	29	2.3	29	87	9	95	20	10	30	38	1.86
32594220--32594415	39	5.0	39	88	2	259	26	34	15	23	1.95
32601652--32601705	16	3.4	16	74	5	56	27	3	7	61	1.40
32601646--32601709	31	2.1	31	87	0	92	29	9	6	54	1.57
32602092--32602141	24	2.0	24	84	7	64	68	2	0	30	1.01
32604885--32604956	31	2.3	31	80	0	81	48	9	18	23	1.77
32621180--32621290	57	1.9	59	87	3	163	25	21	8	45	1.79
32621184--32621304	57	2.1	57	83	6	147	24	20	7	47	1.76
32626960--32627014	27	2.0	27	96	0	101	25	14	9	50	1.72
32628491--32628743	4	62.8	4	87	1	299	42	26	6	25	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32635019--32635222	102	2.0	102	96	0	372	21	27	21	29	1.98
32639866--32639898	17	1.9	17	93	0	57	75	3	9	12	1.14
32652291--32652334	21	2.1	21	95	0	79	61	6	9	22	1.50
32657496--32657547	26	2.0	26	100	0	104	50	15	3	30	1.62
32657531--32657591	31	2.0	31	96	0	113	49	3	4	42	1.40
32664183--32664328	72	2.0	73	97	2	276	33	9	11	45	1.73
32664184--32664296	36	3.1	36	62	18	90	34	7	9	47	1.66
32667369--32667462	36	2.5	35	80	14	100	43	1	23	31	1.61
32667595--32667695	39	2.6	39	80	7	109	22	23	25	27	2.00
32670235--32670269	16	2.1	17	89	5	54	42	8	0	48	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163