genome.fa.s4.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  19  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6487001--6487044	22	2.0	22	86	4	63	36	0	0	63	0.95
6487772--6487805	16	2.1	17	88	5	52	38	0	0	61	0.96
6488472--6488534	25	2.5	24	80	14	65	12	12	1	73	1.18
6489716--6489764	23	2.1	23	82	14	57	57	6	0	36	1.24
6492907--6492951	22	2.0	24	86	8	67	37	0	2	60	1.09
6492913--6492974	33	1.9	32	86	3	88	35	3	0	61	1.12
6499866--6499913	13	3.1	16	80	20	66	54	0	4	41	1.20
6499854--6499920	30	2.2	29	84	10	91	52	1	5	40	1.35
6503291--6503321	16	2.0	16	93	6	55	35	0	0	64	0.94
6525494--6525541	13	3.8	13	79	15	57	37	0	10	52	1.36
6526447--6526502	23	2.4	23	91	5	87	28	5	3	62	1.34
6541997--6542029	5	6.6	5	96	0	57	39	3	0	57	1.14
6542998--6543043	23	2.0	23	100	0	92	26	13	21	39	1.90
6546208--6546241	10	3.4	10	87	0	50	20	2	23	52	1.60
6553315--6553345	3	10.3	3	92	0	53	70	0	29	0	0.87
6559924--6559951	5	5.6	5	100	0	56	82	0	0	17	0.68
6562787--6562821	14	2.3	16	85	14	56	34	2	17	45	1.63
6563050--6563087	18	2.2	17	86	9	51	44	15	7	31	1.75
6563710--6563764	21	2.6	21	82	0	65	41	3	27	27	1.72
6569480--6569533	26	2.1	26	96	0	99	40	20	18	20	1.91
6574553--6574580	5	5.6	5	100	0	56	82	0	0	17	0.68
6575089--6575135	24	2.0	23	84	12	60	57	14	14	12	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6575487--6575549	21	3.0	21	80	0	81	3	44	19	33	1.66
6575507--6575709	86	2.3	87	88	1	300	12	30	17	40	1.86
6577423--6577550	41	3.1	40	77	6	123	32	28	20	18	1.96
6577436--6577594	82	1.9	82	87	5	232	33	27	18	20	1.96
6577436--6577563	41	3.1	40	78	4	139	35	25	18	20	1.95
6577446--6577594	41	3.7	40	76	7	138	32	27	18	22	1.97
6577850--6577924	37	2.0	37	97	0	141	38	4	32	25	1.74
6583242--6583281	21	1.9	21	89	0	62	25	15	30	30	1.95
6587527--6587678	26	5.9	26	65	13	62	57	7	8	26	1.54
6587701--6587731	14	2.2	14	94	0	53	67	0	6	25	1.14
6587741--6587790	25	1.9	26	84	15	68	64	4	4	28	1.30
6588515--6588545	16	2.0	16	93	6	55	80	0	12	6	0.89
6611886--6612209	69	4.9	69	77	9	323	30	27	17	24	1.97
6612048--6612156	57	1.9	57	88	0	164	33	28	15	22	1.95
6612146--6612271	62	2.0	62	82	0	153	31	24	18	25	1.97
6614583--6614627	22	2.0	22	86	0	63	33	6	4	55	1.46
6615913--6615949	19	1.9	20	88	5	58	37	2	24	35	1.70
6616230--6617260	521	2.0	521	99	0	2035	28	21	16	34	1.95
6619224--6619254	13	2.5	13	94	5	55	51	0	0	48	1.00
6625827--6625870	14	3.0	14	78	21	54	34	0	2	63	1.07
6632368--6632408	17	2.3	19	83	12	59	73	0	0	26	0.84
6632371--6632408	18	2.2	18	90	4	60	73	0	0	26	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6636375--6636851	69	7.2	68	77	11	452	31	29	16	22	1.96
6636604--6636714	57	1.9	57	87	0	159	34	28	14	22	1.93
6636705--6636827	62	2.0	62	86	0	174	30	26	18	25	1.98
6636405--6636908	257	1.9	262	81	3	615	30	27	17	24	1.97
6637876--6637948	36	2.0	37	94	2	130	36	0	0	63	0.95
6637880--6637957	36	2.1	36	88	6	113	34	0	1	64	1.02
6640166--6640237	4	19.5	4	82	13	68	75	0	25	0	0.81
6640181--6640268	6	14.5	6	79	13	74	79	0	17	3	0.86
6640179--6640248	23	3.0	23	79	8	79	77	0	22	0	0.78
6640165--6640245	16	5.2	16	77	15	89	74	0	25	0	0.83
6640177--6640255	16	4.8	16	76	17	65	77	0	21	1	0.84
6640398--6640448	24	2.1	24	89	10	77	70	5	23	0	1.09
6640398--6640452	20	2.6	22	88	8	80	67	7	25	0	1.16
6640578--6640621	13	3.6	13	82	11	58	79	0	20	0	0.73
6640760--6640796	7	5.3	7	90	0	56	40	0	0	59	0.97
6640778--6640823	23	2.0	24	86	4	67	41	2	0	56	1.11
6640786--6640829	11	4.0	11	82	8	54	36	2	0	61	1.09
6640974--6641022	18	2.7	19	78	6	57	34	14	4	46	1.63
6640996--6641040	21	2.2	21	88	11	67	35	13	8	42	1.75
6641179--6641241	17	3.5	18	78	6	74	33	14	7	44	1.74
6641179--6641240	18	3.4	18	80	4	72	33	12	8	45	1.72
6641179--6641248	18	3.9	17	78	14	70	31	12	10	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6641178--6641248	36	2.0	36	83	10	92	32	12	9	45	1.75
6641319--6641408	17	5.3	17	79	7	85	32	10	12	45	1.75
6641332--6641389	19	3.1	19	85	7	66	36	10	12	41	1.76
6647171--6647406	114	2.1	115	97	0	447	55	8	2	33	1.42
6648088--6648159	4	19.5	4	82	13	68	75	0	25	0	0.81
6648103--6648190	6	14.5	6	79	13	74	79	0	17	3	0.86
6648101--6648170	23	3.0	23	79	8	79	77	0	22	0	0.78
6648087--6648167	16	5.2	16	77	15	89	74	0	25	0	0.83
6648099--6648177	16	4.8	16	76	17	65	77	0	21	1	0.84
6648320--6648370	24	2.1	24	89	10	77	70	5	23	0	1.09
6648320--6648374	20	2.6	22	88	8	80	67	7	25	0	1.16
6648500--6648543	13	3.6	13	82	11	58	79	0	20	0	0.73
6648682--6648718	7	5.3	7	90	0	56	40	0	0	59	0.97
6648700--6648745	23	2.0	24	86	4	67	41	2	0	56	1.11
6648708--6648751	11	4.0	11	82	8	54	36	2	0	61	1.09
6648911--6648966	27	2.1	27	83	6	69	55	7	0	37	1.27
6648894--6648965	19	3.7	19	83	14	85	59	6	0	33	1.24
6652381--6652411	13	2.5	13	94	5	55	51	0	0	48	1.00
6653389--6653451	29	2.2	29	83	11	76	58	1	4	34	1.29
6664100--6664133	17	2.0	17	100	0	68	17	23	11	47	1.81
6664572--6664659	40	2.2	39	81	2	104	50	25	3	21	1.64
6664734--6664828	9	10.4	9	86	6	129	22	10	27	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6665819--6665888	36	1.9	36	82	5	88	41	35	4	18	1.70
6665870--6665900	14	2.1	15	94	5	55	35	45	0	19	1.51
6667023--6667227	41	5.0	41	83	4	245	29	27	20	21	1.98
6667278--6667410	40	3.3	38	72	9	122	25	18	18	37	1.93
6667278--6667395	40	3.0	41	78	7	138	24	16	18	40	1.90
6672480--6672548	37	1.9	36	82	5	86	57	2	10	28	1.46
6672955--6673005	3	17.0	3	88	8	77	64	0	1	33	1.05
6672955--6673017	20	3.0	20	88	4	81	63	3	1	31	1.19
6672955--6673005	14	3.6	14	84	7	68	64	0	1	33	1.05
6674934--6674960	2	13.5	2	100	0	54	0	0	48	51	1.00
6679236--6679305	32	2.2	32	87	2	97	41	4	7	47	1.50
6680237--6680292	28	2.0	28	100	0	112	25	17	17	39	1.92
6691820--6691872	20	2.6	21	82	11	65	56	7	0	35	1.28
6692175--6692317	59	2.4	59	79	5	146	45	13	18	22	1.84
6692652--6692688	1	37.0	1	88	0	56	0	5	0	94	0.30
6715453--6715514	21	3.0	21	73	0	70	16	24	17	41	1.89
6715382--6715537	42	3.7	42	76	5	111	17	23	16	42	1.88
6721013--6721038	3	8.7	3	100	0	52	0	65	0	34	0.93
6727805--6727833	14	2.1	14	100	0	58	20	0	13	65	1.26
6728951--6729007	27	2.1	28	86	3	80	29	3	3	63	1.28
6729299--6729332	11	3.1	11	86	0	50	26	14	0	58	1.36
6729886--6729957	31	2.5	28	80	12	92	43	4	8	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6730832--6731358	123	4.2	124	87	1	734	29	18	22	29	1.97
6730832--6731358	249	2.1	247	90	1	804	29	18	22	29	1.97
6733512--6733567	29	1.9	29	85	7	78	21	1	28	48	1.60
6733512--6733678	43	3.9	42	80	9	144	26	0	27	45	1.58
6733532--6733676	21	6.8	21	71	10	98	26	0	28	44	1.54
6733614--6733914	7	42.0	7	68	22	91	26	0	26	47	1.52
6733576--6733717	64	2.2	64	80	6	144	28	0	25	46	1.53
6733531--6733721	43	4.5	43	79	11	153	26	0	27	46	1.53
6733580--6733729	21	7.0	22	71	17	82	28	0	24	47	1.52
6733704--6733737	8	4.2	8	88	0	50	23	0	20	55	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163