genome.fa.s4.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  145  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47779807--47779889	42	2.0	41	92	2	139	24	21	9	44	1.82
47788899--47788989	23	4.1	23	68	11	82	21	25	6	46	1.76
47788886--47788969	42	2.0	42	92	0	141	23	20	9	46	1.80
47792245--47792270	3	8.7	3	100	0	52	30	0	0	69	0.89
47797909--47797956	20	2.5	19	80	6	60	39	0	2	58	1.10
47800907--47800931	6	4.2	6	100	0	50	36	0	48	16	1.46
47803557--47803999	51	8.8	50	76	3	352	29	15	25	29	1.96
47803557--47804005	102	4.4	101	85	3	503	29	15	25	29	1.96
47804902--47804949	5	9.6	5	77	8	53	39	2	33	25	1.67
47804908--47804950	15	2.9	15	83	13	61	39	2	32	25	1.69
47807177--47807235	21	2.8	21	89	0	91	25	35	10	28	1.89
47825425--47825487	29	2.1	30	88	2	92	14	14	1	69	1.26
47827696--47827748	27	2.0	25	82	7	61	35	9	0	54	1.33
47829611--47829638	13	2.2	13	100	0	56	32	0	0	67	0.91
47841943--47841990	21	2.2	23	85	7	64	43	10	14	31	1.79
47841973--47842003	9	3.4	9	90	0	53	25	12	22	38	1.90
47842059--47842095	9	4.1	9	85	0	56	48	13	8	29	1.71
47842863--47842893	5	6.2	5	100	0	62	19	19	19	41	1.90
47853688--47853714	4	6.8	4	100	0	54	51	22	0	25	1.48
47855901--47855953	21	2.7	19	86	11	79	33	13	15	37	1.86
47855901--47855979	19	3.7	22	77	14	60	34	10	17	37	1.84
47871987--47872023	19	2.0	18	89	5	56	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47872703--47872760	24	2.4	24	82	0	71	44	24	5	25	1.74
47874009--47874048	19	2.2	18	86	8	55	47	0	2	50	1.14
47874504--47874545	21	2.0	21	85	0	57	38	7	9	45	1.64
47875159--47875191	18	1.9	17	88	11	50	48	0	15	36	1.45
47876683--47876783	45	2.2	45	91	3	159	20	15	19	43	1.88
47893597--47893669	36	2.0	36	100	0	146	21	24	28	24	1.99
47898716--47898780	3	21.7	3	100	0	130	67	0	0	32	0.91
47905414--47905512	49	2.0	49	84	3	128	28	13	28	30	1.94
47909901--47909943	21	2.0	21	95	0	77	27	51	16	4	1.64
47911780--47911832	24	2.2	25	80	12	67	54	16	0	28	1.43
47923543--47923928	44	9.0	44	66	10	145	25	24	20	30	1.99
47923293--47923845	130	4.3	130	91	0	910	25	25	19	28	1.99
47923813--47923927	40	2.7	42	85	9	146	22	21	23	32	1.98
47923934--47924731	134	6.0	134	94	0	1357	29	22	19	28	1.98
47924690--47924872	86	2.1	87	87	1	260	28	23	19	28	1.98
47937101--47937140	21	1.9	21	84	0	53	57	0	5	37	1.21
47937889--47937926	20	1.9	20	84	10	51	71	0	13	15	1.16
47938336--47938368	17	1.9	17	93	0	57	0	3	27	69	1.03
47946106--47946180	37	2.0	37	92	0	123	18	16	12	53	1.73
47948505--47948549	23	2.0	23	83	12	58	60	8	11	20	1.57
47951571--47951607	14	2.6	14	86	0	56	35	2	13	48	1.57
47966782--47966812	16	1.9	16	93	0	53	41	3	6	48	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47973510--47973536	12	2.2	12	100	0	54	25	7	14	51	1.68
47977869--47977911	13	3.2	13	84	12	52	58	4	2	34	1.32
47978157--47978225	18	3.7	18	77	21	70	28	0	4	66	1.10
47978146--47978210	9	6.8	9	78	15	60	27	0	3	69	1.03
47979389--47979508	59	2.0	59	91	0	195	28	9	21	40	1.84
47991124--47991149	9	2.9	9	100	0	52	23	0	11	65	1.25
47991918--47991997	32	2.5	33	79	8	83	41	8	2	47	1.48
47996988--47997023	18	1.9	18	88	5	54	61	0	0	38	0.96
47997582--47997625	17	2.4	18	88	7	63	61	2	2	34	1.21
48000790--48000937	3	48.7	3	71	10	95	27	6	3	62	1.34
48000797--48000934	62	2.2	61	81	11	147	28	6	3	61	1.38
48001050--48001100	8	6.6	8	74	17	54	23	1	1	72	1.05
48001036--48001136	30	3.4	31	74	13	86	17	6	3	71	1.24
48002554--48002579	2	13.0	2	100	0	52	50	0	0	50	1.00
48011212--48011295	44	1.9	43	80	7	98	26	15	22	35	1.94
48011402--48011545	44	3.3	43	91	3	207	29	25	18	26	1.98
48020861--48020903	22	2.0	22	85	0	59	74	6	4	13	1.19
48021808--48021848	13	2.9	14	82	10	57	14	7	41	36	1.74
48023938--48024012	37	2.0	37	94	0	132	32	20	0	48	1.50
48024558--48024582	13	1.9	13	100	0	50	88	0	0	12	0.53
48024970--48025015	16	3.0	15	90	9	67	84	0	13	2	0.71
48024973--48025015	22	2.0	21	90	4	68	83	0	13	2	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48026005--48026989	44	21.7	44	67	16	286	31	19	20	28	1.97
48025946--48026356	96	4.5	94	72	11	336	32	17	19	30	1.95
48025946--48026396	181	2.5	181	91	0	722	32	18	19	29	1.96
48026687--48026984	89	3.3	88	71	10	280	31	20	19	28	1.97
48026369--48026816	227	2.0	227	84	4	591	31	20	20	27	1.97
48034743--48034794	26	2.0	26	96	0	95	21	7	28	42	1.80
48053050--48053112	17	3.6	17	81	14	60	66	3	4	25	1.26
48053084--48053126	3	14.7	3	90	4	70	69	2	0	27	1.00
48053084--48053157	6	13.4	5	77	20	53	71	2	2	22	1.11
48054472--48054499	6	4.7	6	100	0	56	14	0	0	85	0.59
48058658--48058985	43	7.6	43	87	2	417	29	29	17	23	1.97
48062854--48062900	22	2.1	21	84	7	58	10	14	17	57	1.65
48062745--48063254	130	4.0	130	82	10	568	27	14	11	46	1.79
48062959--48062997	21	1.9	20	94	5	69	23	2	0	74	0.94
48062959--48063004	21	2.2	21	88	7	67	28	4	2	65	1.23
48062980--48063233	117	2.2	116	79	6	264	25	14	12	46	1.81
48064470--48064498	15	1.9	15	100	0	58	34	51	0	13	1.42
48064518--48064544	14	1.9	14	100	0	54	37	37	0	25	1.57
48064757--48064843	15	5.9	15	74	12	56	35	43	0	20	1.52
48064757--48064790	8	4.6	7	86	13	50	32	50	0	17	1.47
48065187--48065386	41	4.9	41	80	6	192	31	31	16	20	1.95
48065187--48065387	82	2.4	82	81	5	228	31	31	16	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48069333--48069400	31	2.2	30	86	2	91	22	19	8	50	1.75
48070888--48070938	23	2.2	24	85	3	68	47	1	9	41	1.48
48082039--48082195	26	6.1	25	75	10	129	33	28	18	20	1.96
48082044--48082195	52	2.9	52	84	0	171	34	27	18	19	1.95
48085919--48085975	18	2.8	20	71	15	55	35	0	3	61	1.13
48092085--48092124	21	1.9	21	90	10	64	27	17	25	30	1.97
48092247--48092359	40	2.7	39	75	19	104	36	7	24	31	1.83
48097927--48097956	3	10.0	3	92	0	51	0	63	0	36	0.95
48100402--48100440	19	2.0	20	85	14	55	23	5	0	71	1.05
48100416--48100513	29	3.4	29	72	18	80	33	4	4	58	1.36
48102425--48102466	17	2.5	17	84	0	57	59	0	0	40	0.97
48103291--48103349	3	19.7	3	75	6	57	28	3	5	62	1.32
48103298--48103349	15	3.5	15	80	15	63	30	3	3	61	1.32
48103827--48103858	4	8.0	4	92	0	55	25	3	0	71	1.00
48107858--48107921	25	2.5	25	68	14	58	76	7	7	7	1.16
48108723--48108769	17	2.7	18	87	12	80	74	0	10	14	1.07
48109954--48110640	46	14.9	46	96	1	1171	26	16	26	30	1.97
48110666--48110857	44	4.5	44	71	13	139	29	21	22	26	1.99
48110709--48110821	41	2.6	44	86	4	142	27	20	23	29	1.99
48112273--48112339	31	2.2	31	83	0	80	14	10	8	65	1.46
48112328--48112392	30	2.2	28	84	7	85	20	16	4	58	1.56
48112926--48112957	4	8.0	4	92	0	55	25	3	0	71	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48116568--48116710	69	2.1	70	82	2	182	29	9	3	58	1.46
48119909--48119960	24	2.2	24	85	0	68	50	7	3	38	1.50
48129186--48129212	14	1.9	14	100	0	54	29	48	7	14	1.71
48141537--48141606	16	4.4	16	92	0	95	32	34	0	32	1.58
48142757--48142796	20	2.1	20	86	9	57	52	2	0	45	1.14
48143730--48143773	17	2.4	18	88	7	63	61	2	0	36	1.09
48144485--48144583	43	2.3	43	84	3	119	29	21	20	29	1.98
48144519--48144601	43	1.9	43	87	4	123	25	20	20	33	1.97
48144736--48144987	126	2.0	126	99	0	495	41	8	13	36	1.75
48150364--48150424	29	2.1	29	96	0	113	34	8	8	49	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163