genome.fa.s4.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  129  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41486885--41486926	19	2.1	21	91	8	70	9	9	28	52	1.65
41489132--41489168	2	17.5	2	89	10	56	48	5	0	45	1.25
41490687--41490788	40	2.5	40	80	3	125	36	17	26	19	1.94
41491504--41491551	21	2.3	21	81	0	51	33	6	14	45	1.70
41496352--41496419	31	2.2	31	83	0	82	44	7	10	38	1.67
41504199--41504230	7	4.6	7	96	0	55	59	0	0	40	0.97
41506430--41506483	10	5.1	11	88	6	60	1	1	5	90	0.57
41506430--41506473	1	44.0	1	90	0	70	0	0	4	95	0.27
41517274--41517325	27	1.9	27	88	0	77	25	15	7	51	1.69
41519039--41519089	23	2.2	23	89	10	77	78	5	7	7	1.09
41520052--41520157	4	26.8	4	71	9	65	24	9	0	65	1.29
41520119--41520203	23	3.7	23	73	11	75	25	10	1	62	1.35
41530135--41530172	20	1.9	20	94	0	67	34	2	0	63	1.09
41530134--41530179	20	2.3	20	84	0	65	34	2	0	63	1.07
41530945--41530998	28	1.9	28	88	0	81	40	16	0	42	1.48
41531055--41531097	15	2.9	15	78	0	50	27	23	0	48	1.51
41535252--41535307	25	2.2	25	96	0	103	23	23	19	33	1.97
41535301--41535368	27	2.6	25	75	8	73	20	27	20	30	1.98
41536422--41536455	15	2.3	15	94	0	59	8	23	35	32	1.86
41538138--41538180	15	2.9	15	82	10	61	2	23	0	74	0.93
41538140--41538179	14	2.8	13	85	14	53	2	22	0	75	0.93
41540249--41540569	125	2.6	125	97	0	606	36	11	12	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41543387--41543429	22	2.0	22	90	0	68	41	18	20	18	1.90
41544247--41544289	22	2.0	22	90	0	68	41	18	20	18	1.90
41566778--41566807	3	10.0	3	100	0	60	33	0	33	33	1.58
41572504--41572599	44	2.2	44	88	5	140	30	5	27	37	1.78
41574249--41574351	49	2.1	49	89	3	154	49	8	9	32	1.66
41578421--41578463	5	8.4	5	97	2	77	20	0	0	79	0.74
41579802--41579873	37	1.9	37	97	0	135	41	15	4	38	1.66
41580466--41580510	9	5.0	9	83	0	54	15	37	13	33	1.86
41582445--41582471	2	13.5	2	100	0	54	51	0	0	48	1.00
41585517--41585929	206	2.0	207	99	0	819	30	23	16	29	1.96
41596969--41596999	13	2.4	13	94	0	53	9	16	25	48	1.76
41601082--41601115	16	2.2	15	89	5	50	76	0	8	14	1.01
41601402--41601442	18	2.3	18	83	12	57	63	4	7	24	1.40
41601418--41601503	27	3.0	29	77	14	81	65	3	3	27	1.25
41601450--41601492	18	2.3	19	88	4	61	65	2	4	27	1.25
41601431--41601539	10	10.5	10	69	14	60	68	2	1	26	1.13
41601495--41601537	16	2.9	15	80	10	52	72	2	0	25	0.97
41607167--41607602	146	3.0	147	91	2	689	38	11	18	30	1.87
41612567--41612795	50	4.7	49	82	9	249	26	20	31	21	1.98
41612571--41612753	97	1.9	98	89	5	289	26	21	32	19	1.97
41613221--41613344	45	2.8	43	83	10	151	27	16	24	32	1.96
41631907--41631993	23	4.1	21	76	12	88	39	22	19	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41631947--41631992	23	2.0	23	100	0	92	39	21	21	17	1.93
41631907--41631993	44	2.0	41	80	10	95	39	22	19	18	1.93
41633274--41633316	14	3.3	13	87	9	61	51	0	0	48	1.00
41633274--41633319	8	6.5	8	72	27	50	52	0	0	47	1.00
41636519--41636980	231	2.0	231	96	0	852	16	19	28	35	1.93
41637155--41638196	44	23.3	44	72	8	744	27	23	17	31	1.97
41637193--41638196	89	11.2	88	87	2	1312	27	23	17	31	1.97
41646254--41646293	20	2.0	20	90	0	62	32	17	22	27	1.96
41650024--41650086	27	2.4	26	76	12	65	49	3	9	38	1.51
41658638--41658679	21	2.0	21	100	0	84	38	9	19	33	1.84
41661911--41661944	3	11.3	3	100	0	68	67	0	32	0	0.91
41667953--41668099	62	2.4	62	96	0	267	19	26	15	38	1.91
41669030--41669093	20	3.2	20	78	10	67	37	0	3	59	1.13
41669037--41669093	5	11.6	5	75	17	57	40	0	1	57	1.09
41675747--41675810	32	2.0	32	96	0	119	26	12	20	40	1.88
41677115--41677151	9	4.1	9	92	0	65	45	13	10	29	1.77
41678362--41678394	17	2.0	17	88	5	50	12	6	12	69	1.35
41678860--41678903	18	2.4	19	81	11	65	36	6	4	52	1.49
41682738--41682795	24	2.4	24	97	0	107	39	20	22	17	1.92
41686230--41686293	26	2.4	26	82	7	67	17	14	9	59	1.60
41702301--41702472	88	2.0	87	88	3	256	27	20	26	25	1.99
41703672--41703801	25	5.2	25	73	10	97	36	16	25	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41703711--41703799	25	3.6	24	82	11	101	32	16	28	22	1.96
41722394--41722449	23	2.3	23	79	11	60	62	0	1	35	1.06
41722442--41722497	23	2.6	21	88	8	78	66	0	5	28	1.14
41722408--41722526	10	11.6	10	68	15	57	61	1	3	33	1.22
41722713--41722768	19	2.8	20	86	5	78	26	7	0	66	1.18
41722820--41722867	9	5.3	9	80	7	53	27	6	0	66	1.15
41723799--41723840	19	2.3	18	88	12	59	33	19	0	47	1.49
41724272--41724338	35	1.9	35	87	3	100	31	10	13	44	1.77
41724287--41724326	20	2.0	20	85	0	53	27	12	12	47	1.77
41731470--41731539	29	2.3	29	85	4	86	22	14	15	47	1.82
41761810--41761880	21	3.8	17	73	17	52	35	1	4	59	1.26
41762815--41762848	18	1.9	18	88	5	52	35	2	2	58	1.28
41767045--41767269	67	3.3	67	72	14	242	32	4	3	59	1.34
41767123--41767166	19	2.2	20	84	11	56	25	4	4	65	1.30
41767000--41767276	138	2.0	139	99	0	547	31	5	3	58	1.39
41770291--41770465	95	1.8	95	91	0	287	24	19	9	47	1.78
41788414--41788480	28	2.4	28	97	0	125	46	4	2	46	1.38
41788867--41788901	3	11.7	3	100	0	70	65	0	0	34	0.93
41789662--41789698	3	12.3	3	94	0	65	32	0	35	32	1.58
41794003--41794320	51	6.3	51	88	0	449	29	23	15	31	1.96
41794003--41794320	102	3.1	102	93	0	521	29	23	15	31	1.96
41797488--41797536	16	3.1	16	78	0	62	38	4	30	26	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41797515--41797605	45	2.0	44	85	10	123	32	5	26	35	1.80
41797735--41797769	18	2.0	17	88	5	52	54	0	0	45	0.99
41797830--41797902	16	4.6	16	73	19	55	53	1	0	45	1.09
41797661--41797919	120	2.2	120	94	0	448	47	5	2	44	1.39
41797855--41797902	18	2.8	18	74	22	50	56	0	0	43	0.99
41800543--41800684	71	2.0	71	87	0	203	28	12	16	42	1.85
41806953--41806982	13	2.3	13	94	0	51	60	0	3	36	1.14
41812731--41812828	47	2.1	47	88	3	144	40	17	23	18	1.91
41812709--41812828	22	5.2	24	74	10	90	40	17	23	18	1.91
41813928--41813988	8	7.0	9	78	17	67	54	1	0	44	1.10
41813929--41813988	18	3.1	19	83	11	77	55	1	0	43	1.10
41815322--41815361	13	3.2	13	78	7	55	42	0	17	40	1.49
41816436--41816531	46	2.1	45	86	1	129	39	2	11	46	1.52
41817009--41818608	800	2.0	800	100	0	3200	27	17	24	30	1.97
41819765--41819807	14	3.0	14	82	3	59	48	0	0	51	1.00
41821670--41821726	29	1.9	30	82	13	73	45	0	3	50	1.18
41832776--41832815	13	3.2	13	78	7	55	42	0	17	40	1.49
41833890--41833985	46	2.1	45	86	1	129	39	2	11	46	1.52
41836419--41836461	14	3.0	14	82	3	59	48	0	0	51	1.00
41838324--41838380	29	1.9	30	82	13	73	45	0	3	50	1.18
41841116--41841147	7	4.6	7	92	0	55	31	56	9	3	1.47
41841229--41841301	36	2.0	36	89	0	110	21	9	35	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41841294--41841345	14	3.7	14	82	5	52	11	1	40	46	1.51
41845724--41845750	7	3.9	7	100	0	54	25	0	0	74	0.83
41845721--41845785	33	2.0	32	82	8	78	29	0	3	67	1.05
41848201--41848273	26	2.9	26	71	17	73	53	1	2	42	1.23
41852913--41852937	13	1.9	13	100	0	50	68	24	0	8	1.16
41861894--41862051	46	3.4	46	92	1	246	25	17	22	34	1.96
41876465--41876607	43	3.3	43	87	3	182	29	20	21	28	1.98
41882264--41883602	113	11.8	113	98	0	2563	25	26	15	31	1.96
41885598--41885795	43	4.6	43	80	6	215	34	20	22	22	1.96
41885610--41885795	85	2.2	85	85	3	250	35	19	22	22	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163