genome.fa.s4.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  70  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23132874--23132935	29	2.1	29	85	11	83	38	0	1	59	1.07
23133026--23133059	15	2.3	15	90	5	52	26	0	5	67	1.13
23136602--23136883	126	2.2	125	87	6	392	31	21	16	29	1.95
23142487--23142550	32	2.0	32	93	0	110	26	26	3	43	1.69
23146874--23146976	39	2.6	41	89	7	135	32	13	17	36	1.89
23146888--23146976	39	2.3	39	94	1	153	31	15	15	37	1.90
23146998--23147061	32	2.0	32	93	0	110	26	26	3	43	1.69
23149945--23149997	28	1.9	27	88	3	79	32	22	24	20	1.98
23149949--23150009	28	2.2	28	84	0	77	39	22	19	18	1.92
23150167--23150231	27	2.4	27	92	2	105	33	23	23	20	1.97
23150434--23150485	27	1.9	27	92	0	86	26	19	19	34	1.95
23153887--23153966	36	2.2	36	84	4	108	26	5	21	47	1.71
23153893--23153961	18	3.9	17	81	7	75	26	4	23	46	1.71
23155303--23155341	20	2.0	20	100	0	78	41	5	15	38	1.69
23155905--23155938	15	2.3	15	95	5	61	26	32	8	32	1.87
23167107--23167136	15	2.0	15	93	0	51	30	26	6	36	1.82
23178995--23179074	39	2.1	39	85	0	106	40	22	8	28	1.84
23180307--23180357	22	2.3	22	83	6	59	47	11	13	27	1.78
23183022--23183089	34	2.0	34	100	0	136	17	23	14	44	1.86
23184992--23185042	24	2.1	24	100	0	102	11	43	11	33	1.78
23192075--23192145	27	2.6	27	77	4	81	33	22	16	26	1.96
23197370--23197425	19	3.2	19	65	19	57	19	26	10	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23197522--23197564	18	2.5	17	82	10	52	27	11	20	39	1.88
23197704--23197748	16	2.8	16	79	0	54	26	17	15	40	1.90
23197833--23197865	16	2.1	16	94	0	57	42	24	9	24	1.83
23199865--23199890	12	2.2	12	100	0	52	7	0	23	69	1.14
23208381--23208460	21	3.8	21	85	3	108	45	17	21	16	1.86
23210781--23210924	46	3.1	46	81	4	164	31	21	18	28	1.97
23214932--23214962	3	10.3	3	100	0	62	67	0	0	32	0.91
23218776--23218806	5	6.2	5	92	0	53	41	16	19	22	1.89
23218896--23218921	5	5.2	5	100	0	52	38	19	19	23	1.93
23219716--23219752	9	4.1	9	92	0	65	29	10	13	45	1.77
23219805--23219835	9	3.4	9	90	0	53	38	22	12	25	1.90
23221602--23221627	7	3.7	7	100	0	52	30	0	15	53	1.42
23221863--23221889	12	2.2	12	100	0	54	44	14	7	33	1.73
23224378--23224433	23	2.5	23	88	2	87	28	10	14	46	1.78
23225238--23225277	19	2.1	19	85	0	53	55	5	2	37	1.35
23232421--23232476	24	2.3	24	76	14	60	55	0	3	41	1.17
23232441--23232471	9	3.3	9	95	4	53	58	0	0	41	0.98
23232862--23232937	37	2.1	36	83	11	93	40	2	2	53	1.28
23232891--23233005	60	1.9	60	91	1	187	39	4	4	52	1.41
23235372--23235432	20	3.1	20	95	2	106	45	9	8	36	1.67
23237617--23237712	30	3.2	30	71	11	79	39	4	7	48	1.50
23237617--23237734	61	1.9	60	86	10	168	39	4	6	49	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23237847--23237897	25	2.0	26	84	3	68	39	7	7	45	1.62
23240116--23240198	32	2.6	32	86	1	114	15	38	25	20	1.92
23244408--23244539	45	3.0	44	79	9	142	37	27	13	21	1.91
23244757--23244817	20	3.2	20	69	21	67	40	18	0	40	1.50
23244744--23244819	37	2.0	38	97	2	145	40	18	0	40	1.50
23246328--23246399	36	2.0	36	100	0	144	33	22	8	36	1.84
23246555--23246592	20	1.9	20	89	10	60	34	10	5	50	1.59
23248946--23249029	36	2.3	36	81	4	98	29	7	27	35	1.83
23249213--23249293	26	3.1	26	75	5	74	27	8	20	43	1.81
23253300--23253336	18	2.1	18	100	0	74	32	0	24	43	1.55
23261055--23261109	26	2.1	27	86	3	76	25	16	10	47	1.79
23261258--23261299	12	3.5	12	78	12	50	21	21	0	57	1.41
23281620--23281644	5	5.0	5	100	0	50	80	0	20	0	0.72
23283500--23283690	91	2.1	88	81	4	213	35	17	19	27	1.95
23290196--23290265	26	2.8	25	89	8	106	44	8	0	47	1.34
23290334--23290427	27	3.5	27	86	0	125	30	26	24	18	1.97
23290469--23290602	4	33.0	4	73	20	86	69	0	30	0	0.89
23290477--23290531	18	2.9	18	79	15	67	65	0	34	0	0.93
23290516--23290621	18	5.3	18	70	24	79	68	0	31	0	0.89
23290496--23290640	43	3.5	43	80	16	187	68	0	31	0	0.89
23290469--23290635	74	2.3	70	81	12	176	68	0	31	0	0.89
23293902--23293963	3	20.7	3	100	0	124	67	32	0	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23293962--23294002	3	13.3	3	89	5	64	63	4	0	31	1.15
23294048--23294086	20	2.0	21	85	10	55	66	10	0	23	1.22
23294249--23294306	27	2.1	27	93	0	98	17	29	29	24	1.97
23294332--23294359	14	2.0	14	100	0	56	14	7	14	64	1.48
23294373--23294442	27	2.6	28	88	6	110	45	0	10	44	1.37
23296234--23296283	23	2.3	22	83	13	59	8	6	6	80	1.04
23296486--23296522	9	4.1	9	86	13	58	45	10	10	32	1.74
23296706--23296736	9	3.4	9	90	0	53	25	12	22	38	1.90
23296789--23296826	9	4.2	9	93	0	67	44	13	10	31	1.77
23296335--23296942	304	2.0	304	94	0	1065	32	22	11	34	1.89
23297040--23297099	30	2.0	31	86	3	86	20	40	0	40	1.52
23298375--23298401	5	5.4	5	100	0	54	22	18	18	40	1.91
23302247--23302277	16	1.9	16	93	0	53	61	0	3	35	1.12
23302790--23302832	22	2.0	22	85	0	59	13	18	25	41	1.88
23302964--23303145	86	2.1	86	87	4	260	31	29	17	20	1.96
23302967--23303125	43	3.7	43	90	1	239	30	28	18	22	1.97
23303810--23303928	23	5.2	23	70	9	75	39	22	6	31	1.80
23304076--23304795	72	10.2	68	82	7	668	40	22	5	31	1.77
23304076--23304795	144	5.1	138	91	4	859	40	22	5	31	1.77
23304076--23304798	49	15.4	46	75	10	500	40	22	5	31	1.77
23304076--23304798	23	30.8	23	75	9	566	40	22	5	31	1.77
23306404--23306479	38	2.0	38	100	0	152	39	26	0	34	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23307918--23308153	41	5.8	41	89	2	359	30	24	21	23	1.99
23307918--23308153	81	2.9	82	90	1	377	30	24	21	23	1.99
23307918--23308153	122	1.9	122	90	1	375	30	24	21	23	1.99
23308213--23308343	40	3.3	38	73	7	102	22	25	19	32	1.98
23311142--23311212	20	3.6	19	75	7	54	32	11	15	40	1.83
23313085--23313120	15	2.5	14	86	8	54	44	8	0	47	1.33
23314716--23314785	12	5.5	12	77	19	63	72	0	4	22	1.01
23314716--23314790	4	18.5	4	75	22	52	73	0	4	22	1.00
23314708--23314796	26	3.6	25	83	10	103	73	0	4	22	1.02
23321172--23321209	15	2.6	15	91	4	60	47	7	0	44	1.32
23332108--23332630	260	2.0	260	96	1	958	32	17	15	34	1.91
23340752--23340803	24	2.2	24	89	0	77	36	3	9	50	1.54
23345119--23345170	24	2.2	24	89	0	77	36	3	9	50	1.54
23350282--23350323	18	2.3	18	91	0	66	52	23	9	14	1.71
23353239--23353264	12	2.2	12	100	0	52	34	38	26	0	1.57
23360424--23360453	15	2.1	15	93	6	53	6	26	0	66	1.16
23361152--23361250	48	2.1	48	81	7	112	21	12	22	44	1.85
23362167--23362213	21	2.2	22	81	11	53	38	4	2	55	1.31
23363404--23363458	20	2.8	20	78	10	67	12	25	20	41	1.87
23381868--23381896	2	14.5	2	100	0	58	51	0	0	48	1.00
23382297--23382336	12	3.3	12	89	0	53	42	0	57	0	0.98
23382291--23382338	18	2.7	18	76	0	51	45	0	52	2	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23388271--23388396	67	1.9	67	86	3	182	42	14	6	36	1.71
23388794--23388836	14	3.0	13	83	16	50	27	2	9	60	1.40
23389357--23389411	26	2.1	27	93	3	94	21	30	21	25	1.98
23393339--23393538	43	4.7	41	75	7	177	35	25	16	22	1.95
23393313--23393535	43	5.3	41	73	13	168	35	25	15	23	1.94
23393313--23393538	85	2.7	84	85	4	278	35	25	15	23	1.94
23400066--23400295	75	3.1	75	87	3	311	54	10	8	26	1.63
23400509--23400649	33	4.3	33	85	0	165	24	9	47	18	1.78
23401240--23401267	13	2.2	13	100	0	56	71	0	14	14	1.15
23402422--23402483	24	2.6	24	77	10	72	16	25	22	35	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163