genome.fa.s4.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  115  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37070143--37070208	21	3.0	24	79	18	81	39	16	7	36	1.77
37070143--37070219	19	3.7	21	84	11	88	41	15	7	35	1.76
37075025--37075056	1	32.0	1	100	0	64	100	0	0	0	0.00
37091577--37091601	3	8.3	3	100	0	50	68	0	32	0	0.90
37099435--37099482	24	2.0	25	83	4	62	50	0	0	50	1.00
37116954--37117139	49	3.8	50	77	12	152	34	18	26	20	1.96
37116954--37117128	25	7.1	25	72	17	134	34	20	26	19	1.96
37131922--37131958	19	2.1	19	85	10	51	35	5	13	45	1.66
37133005--37133033	6	4.8	6	100	0	58	34	17	17	31	1.93
37138867--37138923	28	2.0	28	93	0	96	38	12	5	43	1.65
37139041--37139118	33	2.4	33	74	8	77	28	24	14	33	1.94
37139059--37139254	101	1.9	101	90	0	311	28	23	15	31	1.96
37146506--37146687	73	2.5	72	82	6	197	35	13	10	40	1.79
37150886--37150925	17	2.4	17	95	0	71	22	32	17	27	1.96
37151858--37152097	101	2.4	101	87	1	338	29	23	14	32	1.94
37152805--37152830	13	2.0	13	100	0	52	30	23	0	46	1.53
37158236--37158270	17	2.1	17	89	10	54	68	0	0	31	0.90
37158234--37158274	18	2.3	18	84	16	59	68	0	0	31	0.90
37162647--37162674	14	2.0	14	100	0	56	21	14	0	64	1.29
37164076--37164183	29	3.7	29	74	15	87	57	4	0	37	1.20
37164965--37165019	25	2.0	26	86	13	76	61	5	0	32	1.19
37165348--37165390	21	2.0	23	82	17	56	27	32	2	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37165511--37165544	13	2.5	13	90	4	50	2	11	2	82	0.89
37173561--37173586	1	26.0	1	100	0	52	0	100	0	0	0.00
37178275--37178497	103	2.2	103	88	1	322	43	11	3	42	1.57
37188847--37189144	88	3.4	85	74	8	251	27	23	19	28	1.98
37188985--37189096	44	2.5	44	81	5	129	32	21	17	28	1.96
37204153--37204239	32	3.0	26	76	20	68	26	3	18	51	1.62
37204176--37204246	32	2.2	32	94	0	124	28	2	19	49	1.62
37209010--37209148	49	2.8	49	91	0	215	34	29	12	23	1.92
37210318--37210462	23	6.3	23	85	0	200	30	24	22	22	1.99
37210914--37210972	30	2.0	30	82	0	73	28	25	3	42	1.71
37212046--37212087	18	2.3	18	88	8	59	50	2	0	47	1.14
37212438--37213517	539	2.0	540	99	0	2153	34	12	16	37	1.85
37213901--37213961	30	1.9	31	83	9	79	34	11	14	39	1.82
37214103--37214164	11	6.0	11	82	14	62	58	4	0	37	1.20
37214103--37214164	20	3.0	22	79	13	78	58	4	0	37	1.20
37214171--37214209	20	2.0	20	85	10	53	58	7	0	33	1.26
37214811--37214850	20	2.0	21	85	5	55	50	2	0	47	1.14
37215227--37215256	15	2.0	15	93	0	51	70	0	3	26	1.03
37218017--37218047	13	2.4	13	94	0	53	0	6	41	51	1.27
37218284--37218556	44	6.3	44	74	11	217	28	20	20	30	1.98
37218593--37219076	86	5.6	86	93	0	783	25	23	22	28	1.99
37220832--37221051	6	36.2	6	99	0	413	0	16	0	83	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37220829--37221049	1	221.0	1	68	0	127	0	15	0	84	0.63
37221056--37221099	22	2.1	21	87	8	63	9	2	9	79	1.02
37221064--37221096	8	4.4	8	85	14	52	9	0	9	81	0.87
37221056--37221110	28	2.0	28	85	7	76	10	1	9	78	1.05
37227058--37227088	13	2.4	13	94	0	53	0	6	41	51	1.27
37229037--37229072	3	12.0	3	100	0	72	66	0	0	33	0.92
37232933--37233037	51	2.1	50	90	1	165	27	9	20	42	1.82
37240258--37240287	11	2.7	11	89	0	51	13	0	3	83	0.77
37240875--37240934	23	2.6	22	82	15	68	35	0	1	63	1.05
37240875--37240936	26	2.7	23	85	12	74	35	0	1	62	1.05
37244177--37244246	11	6.6	11	73	20	60	62	0	2	34	1.10
37244166--37244257	41	2.3	40	90	9	152	70	0	2	27	0.98
37244166--37244257	40	2.3	41	92	3	161	70	0	2	27	0.98
37249251--37249316	34	1.9	34	96	0	123	24	15	13	46	1.81
37256854--37256900	19	2.5	19	89	0	76	38	4	0	57	1.18
37268364--37268419	21	2.6	21	83	8	60	44	1	7	46	1.41
37274334--37274358	12	2.1	12	100	0	50	24	36	24	16	1.94
37274519--37274555	9	4.1	9	96	0	56	40	27	10	21	1.86
37275437--37275477	22	1.9	21	90	5	64	63	4	0	31	1.15
37276227--37276273	19	2.4	21	79	17	64	27	0	4	68	1.08
37276204--37276270	29	2.4	28	82	7	73	26	2	2	67	1.20
37277848--37277880	7	4.7	7	96	0	57	9	0	3	87	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37278567--37278627	8	7.4	8	92	7	88	36	0	0	63	0.94
37278561--37278624	3	22.3	3	84	15	91	34	1	0	64	1.03
37278569--37278639	21	3.4	21	80	19	87	33	1	0	64	1.02
37279230--37279289	27	2.2	27	93	0	102	36	10	23	30	1.87
37279237--37279291	27	2.0	27	100	0	110	38	10	25	25	1.88
37280847--37280911	20	3.3	19	80	10	69	58	4	0	36	1.19
37280846--37280901	19	2.9	19	81	7	69	60	3	0	35	1.14
37282354--37282418	31	2.1	31	85	0	85	35	15	9	40	1.79
37283017--37283424	223	1.8	221	82	4	516	41	11	10	37	1.75
37289493--37289567	13	5.6	14	73	16	61	0	21	2	76	0.92
37289509--37289548	7	5.6	7	93	3	62	0	22	2	75	0.93
37289525--37289582	20	2.9	21	82	10	68	1	22	3	72	1.09
37290925--37290950	5	5.2	5	100	0	52	42	19	19	19	1.90
37291040--37291065	5	5.2	5	100	0	52	38	19	19	23	1.93
37291014--37291065	26	2.0	26	81	7	61	34	15	26	23	1.94
37292663--37292699	9	4.1	9	92	0	65	29	10	13	45	1.77
37292752--37292782	9	3.4	9	90	0	53	38	22	12	25	1.90
37293030--37293072	18	2.3	18	84	11	52	74	2	0	23	0.93
37293584--37293609	6	4.3	6	100	0	52	15	0	0	84	0.62
37294101--37294165	29	2.2	29	86	8	87	20	43	0	36	1.52
37295931--37295978	17	2.8	17	77	0	60	31	0	0	68	0.90
37297890--37297925	18	1.9	19	88	5	56	63	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37299661--37299727	34	2.0	34	100	0	134	41	29	0	28	1.56
37299722--37299751	13	2.3	13	94	0	51	46	26	0	26	1.53
37300009--37300074	25	2.6	25	80	4	71	28	21	19	30	1.98
37302352--37302433	23	3.4	23	83	8	67	31	20	25	21	1.98
37302375--37302433	23	2.6	23	88	0	82	33	22	25	18	1.96
37302375--37302443	23	3.0	22	81	12	77	34	21	24	18	1.96
37309330--37309361	7	4.6	7	100	0	64	56	12	0	31	1.37
37312263--37312483	106	2.1	107	84	2	284	34	14	23	27	1.94
37318386--37318411	7	3.7	7	100	0	52	42	30	0	26	1.56
37318378--37318412	14	2.5	15	86	13	56	40	28	0	31	1.57
37320946--37321071	28	4.5	28	89	0	180	30	12	25	30	1.93
37327844--37327875	15	2.0	17	88	11	50	68	3	21	6	1.26
37328778--37328875	28	3.5	28	88	0	142	29	13	27	29	1.94
37329601--37329730	23	5.6	23	75	8	129	25	16	15	42	1.88
37329586--37329732	70	2.1	70	91	2	233	25	15	14	44	1.84
37341764--37341792	15	1.9	15	100	0	58	34	34	6	24	1.82
37347381--37347416	18	2.0	18	89	10	56	13	11	2	72	1.23
37347650--37347700	25	2.0	25	100	0	102	39	15	7	37	1.77
37352151--37352465	162	1.9	163	90	1	499	26	22	24	26	2.00
37356897--37356930	15	2.3	15	90	5	52	67	5	0	26	1.13
37357126--37357167	22	1.9	22	90	0	66	33	0	33	33	1.58
37357139--37357197	30	2.0	30	93	0	100	33	0	33	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37357168--37357216	22	2.2	22	89	7	73	38	0	26	34	1.57
37364309--37364352	23	1.9	23	86	9	63	13	6	2	77	1.07
37380737--37380787	19	2.6	20	82	14	70	23	21	11	43	1.85
37381232--37381276	16	2.9	15	84	12	56	42	22	0	35	1.54
37382920--37382972	26	2.0	27	88	3	81	32	26	18	22	1.97
37386291--37386349	26	2.3	27	82	8	77	0	23	3	72	0.99
37388872--37388897	12	2.2	12	100	0	52	0	0	7	92	0.39
37389685--37389710	5	5.2	5	100	0	52	42	19	19	19	1.90
37396473--37396507	18	2.0	17	94	5	61	48	0	0	51	1.00
37397089--37397161	24	3.0	24	82	7	94	13	43	4	38	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163