Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  163  of  163  ( 19464 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55380404--55380443
21
1.9
21
89
0
62
65
5
7
22
1.38
55380492--55380527
12
3.0
12
91
0
63
55
0
11
33
1.35
55382769--55382806
18
2.1
18
90
0
58
42
18
15
23
1.89
55389431--55389506
37
2.1
37
90
5
118
36
5
14
43
1.68
55389504--55389541
18
2.1
18
90
0
58
34
5
26
34
1.79
55391744--55391816
26
2.8
26
79
6
67
60
17
2
19
1.48
55391855--55392014
28
5.8
28
73
11
125
53
17
9
19
1.70
55392145--55392219
28
2.7
27
75
4
87
57
16
2
24
1.52
55392244--55392324
29
2.8
27
83
10
99
50
11
14
23
1.75
55392244--55392324
28
2.8
28
83
10
101
50
11
14
23
1.75
55395606--55395657
23
2.3
23
90
3
79
40
23
5
30
1.78
55396101--55396147
24
2.0
24
84
8
62
36
0
2
61
1.08
55400656--55400728
26
2.8
26
82
0
83
36
8
21
32
1.83
55404675--55404713
12
3.2
12
85
0
51
51
5
23
20
1.67
55404676--55404719
20
2.2
20
87
0
61
52
4
25
18
1.64
55409969--55410023
24
2.3
24
87
0
74
20
27
14
38
1.91
55415522--55415567
9
5.0
9
83
2
56
34
0
0
65
0.93
55415522--55415561
10
4.1
10
90
6
64
30
0
0
70
0.88
55415522--55415561
19
2.1
19
90
0
62
30
0
0
70
0.88
55454376--55454569
97
2.0
97
97
0
370
24
16
13
45
1.83
55456893--55456961
31
2.2
32
94
2
122
14
21
31
31
1.93
55457371--55457412
21
2.0
22
90
4
68
14
14
23
47
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55457483--55457534
15
3.5
15
100
0
104
26
23
28
21
1.99
55457466--55457549
30
2.8
29
77
15
98
22
22
28
26
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163

The End!