genome.fa.s4.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  119  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38344567--38344609	16	2.8	16	89	10	63	41	6	16	34	1.75
38346702--38346737	16	2.2	16	90	0	54	52	11	0	36	1.37
38347075--38347538	47	9.9	47	98	0	874	38	14	12	34	1.84
38347791--38347825	15	2.3	15	90	9	54	51	22	0	25	1.48
38355455--38355517	31	2.0	31	81	0	72	28	20	25	25	1.99
38355399--38355710	111	2.8	110	79	4	335	28	18	25	27	1.98
38360758--38360801	23	1.9	23	95	0	79	59	11	6	22	1.55
38360827--38360881	24	2.3	23	84	9	67	67	21	3	7	1.31
38365833--38365858	5	5.2	5	100	0	52	42	19	19	19	1.90
38372461--38372489	6	4.8	6	100	0	58	48	0	51	0	1.00
38373133--38373164	16	2.0	16	100	0	64	37	12	18	31	1.88
38379815--38379847	12	2.8	12	90	4	50	75	0	9	15	1.03
38380908--38381051	75	1.9	75	91	2	236	42	11	16	29	1.83
38381138--38381212	37	2.0	37	92	5	125	41	8	5	45	1.56
38381034--38381351	175	1.8	176	89	2	505	39	8	6	45	1.61
38395491--38395538	22	2.1	23	84	7	62	27	14	0	58	1.37
38397800--38397904	3	35.3	3	98	1	203	0	34	0	65	0.93
38400156--38400196	3	13.3	3	94	5	73	65	0	34	0	0.93
38401330--38402175	3	282.0	3	99	0	1683	0	0	33	66	0.93
38402526--38402565	15	2.7	15	96	0	71	27	2	32	37	1.70
38402798--38402847	5	10.0	5	100	0	100	40	0	0	60	0.97
38403928--38403967	3	13.3	3	100	0	80	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38404365--38404407	22	2.0	22	90	0	68	20	11	9	58	1.61
38409561--38409590	4	7.8	4	92	7	53	76	0	0	23	0.78
38415662--38415854	89	2.2	90	97	0	361	41	6	7	44	1.58
38418821--38418860	13	3.0	13	85	3	53	20	2	25	52	1.59
38418810--38418906	45	2.2	45	88	0	140	20	5	25	48	1.70
38425883--38426124	50	4.8	50	89	3	344	21	31	21	24	1.98
38429073--38429168	35	2.8	35	81	10	117	27	23	17	31	1.97
38431000--38431086	26	3.4	26	79	1	86	39	29	13	17	1.88
38434104--38434146	19	2.3	18	84	11	52	32	0	0	67	0.91
38446730--38446814	17	4.7	18	73	15	59	64	2	2	30	1.18
38446729--38446835	55	1.9	56	85	9	148	65	1	1	30	1.14
38446731--38446839	28	3.9	29	70	11	75	64	1	1	32	1.15
38453880--38453928	21	2.3	22	75	10	57	26	30	12	30	1.92
38456964--38457003	21	1.9	21	94	0	71	35	10	15	40	1.80
38457000--38457075	18	4.3	17	73	9	55	44	9	13	32	1.75
38457068--38457118	22	2.4	21	90	6	84	41	7	7	43	1.63
38457095--38457218	42	3.0	42	75	15	141	41	8	8	40	1.67
38457559--38457611	1	53.0	1	76	0	52	0	11	0	88	0.51
38457552--38457611	9	6.7	9	88	5	86	0	13	0	86	0.57
38457559--38457610	19	2.8	18	85	5	77	0	11	0	88	0.52
38457970--38457996	3	9.0	3	100	0	54	0	33	0	66	0.92
38458328--38458471	30	4.9	28	80	7	162	41	6	19	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38458328--38458471	59	2.5	58	84	5	175	41	6	19	32	1.76
38458306--38458471	89	1.9	89	85	2	235	40	7	20	31	1.79
38458507--38458550	22	2.0	22	90	0	70	34	20	6	38	1.79
38460840--38460893	25	2.1	27	89	6	85	24	14	27	33	1.94
38473252--38473298	21	2.2	21	84	3	58	40	14	10	34	1.81
38473262--38473306	21	2.1	21	95	0	81	37	13	13	35	1.84
38473574--38473718	25	5.7	25	72	9	89	31	22	25	20	1.98
38473794--38473876	26	3.3	26	77	9	91	36	20	25	18	1.95
38476271--38476436	17	9.6	17	66	21	69	47	2	2	47	1.28
38476333--38476496	20	8.1	20	63	25	60	47	2	2	47	1.28
38476278--38476429	69	2.3	69	80	6	163	47	2	2	47	1.30
38476222--38476546	122	2.7	122	100	0	650	47	3	3	46	1.33
38476376--38476485	53	2.0	56	82	5	136	46	3	2	47	1.34
38476400--38476543	69	2.1	68	81	5	159	47	2	2	46	1.31
38480171--38480219	20	2.4	21	83	10	57	59	12	2	26	1.44
38486527--38486561	17	2.1	17	94	0	61	31	17	14	37	1.89
38489227--38489279	18	3.0	17	77	5	52	37	3	0	58	1.16
38489237--38489446	103	2.0	104	98	0	404	31	10	4	53	1.55
38493437--38493688	87	2.8	88	83	6	285	38	20	10	30	1.86
38493821--38493869	19	2.5	20	80	6	64	55	0	0	44	0.99
38493872--38493934	19	3.4	18	78	6	63	61	3	4	30	1.32
38494105--38494179	19	3.7	21	77	10	75	29	8	2	60	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38494108--38494179	20	3.6	20	76	12	67	27	8	2	61	1.39
38494103--38494189	39	2.3	38	78	11	97	29	6	2	60	1.35
38494211--38494354	76	1.9	78	86	4	213	31	6	1	61	1.29
38494470--38494742	89	3.1	89	83	5	326	28	11	22	37	1.89
38515097--38515146	20	2.4	21	93	6	84	48	0	0	52	1.00
38515097--38515147	10	4.9	10	80	4	57	47	0	0	52	1.00
38525881--38525977	49	2.0	49	81	0	113	45	13	17	23	1.84
38526169--38526203	2	17.5	2	93	0	61	48	0	0	51	1.00
38529286--38529349	24	2.6	25	73	11	69	17	28	14	40	1.88
38529329--38529459	25	5.3	25	69	10	90	19	25	18	35	1.95
38529292--38529459	73	2.3	74	80	10	193	19	26	17	36	1.94
38529414--38529471	25	2.3	25	82	5	73	22	25	20	31	1.98
38531410--38531467	26	2.2	26	84	6	73	17	22	22	37	1.93
38531543--38531662	25	4.9	25	68	7	75	20	27	20	31	1.97
38535990--38536093	24	4.2	25	71	12	90	16	27	18	37	1.92
38535951--38536072	49	2.4	50	82	9	133	14	28	18	37	1.91
38536109--38536169	25	2.4	25	86	5	79	21	27	21	29	1.98
38536109--38536189	25	3.2	25	82	6	76	20	24	22	32	1.98
38538155--38538211	28	2.0	28	93	0	96	56	10	7	26	1.59
38540227--38540264	3	13.0	3	94	5	69	34	0	31	34	1.58
38542405--38542450	23	2.0	22	84	12	58	63	8	2	26	1.35
38546956--38546990	17	2.0	17	88	5	52	71	0	17	11	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38547214--38547243	2	15.0	2	100	0	60	50	0	0	50	1.00
38561680--38561904	44	5.1	44	66	14	131	27	26	24	22	2.00
38561666--38561916	89	2.8	89	89	0	369	26	25	24	23	2.00
38563832--38563872	21	2.0	21	95	0	73	36	2	4	56	1.34
38575194--38575224	6	5.2	6	100	0	62	16	16	51	16	1.77
38579415--38579459	18	2.6	18	76	16	58	24	33	0	42	1.55
38583631--38583742	32	3.5	32	82	9	147	42	10	10	35	1.74
38583849--38583917	33	2.1	33	94	0	120	8	20	33	37	1.83
38585888--38586009	23	5.3	23	85	3	156	28	24	21	25	1.99
38585888--38586008	46	2.6	46	88	0	179	28	24	21	24	1.99
38586233--38586271	18	2.2	17	86	13	53	46	20	0	33	1.51
38588687--38588720	12	2.7	13	81	9	52	64	0	5	29	1.17
38589005--38589062	31	1.9	31	85	3	82	44	8	8	37	1.66
38592840--38592874	18	1.9	18	88	0	52	37	0	22	40	1.55
38593133--38593164	1	32.0	1	100	0	64	0	100	0	0	0.00
38604765--38604907	37	3.9	37	74	10	123	51	11	18	18	1.76
38604765--38604892	37	3.5	37	76	6	134	52	9	20	17	1.72
38610763--38610840	35	2.2	35	81	4	93	50	14	15	20	1.78
38610723--38610840	37	3.2	37	77	4	98	48	14	15	22	1.80
38613688--38613816	43	3.0	44	79	16	160	22	17	27	31	1.97
38613921--38613966	23	2.0	23	100	0	92	34	13	13	39	1.83
38616451--38616569	37	3.2	36	80	10	116	52	10	19	17	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38623570--38623599	15	2.0	15	93	0	51	23	26	3	46	1.68
38631212--38631267	29	1.9	29	89	7	87	35	8	0	55	1.31
38632846--38632900	27	2.0	27	89	0	83	18	12	10	58	1.63
38636849--38636874	2	13.0	2	100	0	52	50	0	0	50	1.00
38639354--38639404	21	2.4	21	76	0	57	64	5	5	23	1.38
38640165--38640207	19	2.4	17	81	14	50	48	6	6	37	1.57
38646273--38646307	15	2.3	15	95	0	61	62	14	0	22	1.31
38646294--38646667	182	2.0	184	97	2	711	62	10	8	18	1.50
38653037--38653086	1	50.0	1	93	0	64	4	0	4	92	0.48
38654951--38655019	23	3.0	23	77	22	74	56	2	1	39	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163