genome.fa.s4.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  150  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49639843--49639986	19	7.7	18	71	15	89	65	0	31	2	1.04
49640486--49640562	27	2.9	27	94	0	127	25	28	31	14	1.95
49640607--49640657	18	2.8	18	87	3	66	25	0	7	66	1.18
49640664--49640689	13	2.0	13	100	0	52	76	0	0	23	0.78
49640695--49640763	27	2.5	28	93	6	115	40	10	0	49	1.37
49640766--49640805	16	2.4	16	88	12	55	85	5	5	5	0.85
49641022--49641048	11	2.5	11	100	0	54	22	14	0	62	1.31
49642132--49642168	17	2.2	17	100	0	74	29	16	8	45	1.76
49643133--49643161	14	2.1	14	100	0	58	37	6	0	55	1.27
49644738--49644927	94	2.0	93	96	1	353	23	33	17	24	1.96
49650038--49650107	26	2.7	26	86	8	106	47	0	7	45	1.30
49650038--49650103	27	2.5	26	83	13	91	46	0	6	46	1.27
49650217--49650260	13	3.4	13	78	12	54	54	9	2	34	1.44
49650209--49650260	26	2.0	26	88	0	77	51	7	3	36	1.49
49650524--49650574	22	2.2	25	86	10	72	31	0	1	66	1.03
49653243--49653359	9	13.4	9	86	5	134	27	10	21	41	1.85
49653268--49653314	14	3.0	15	84	15	60	27	8	23	40	1.83
49654099--49654210	24	4.7	24	86	0	161	20	27	4	47	1.69
49674307--49674358	27	2.0	27	96	3	97	30	17	11	40	1.85
49678524--49678586	30	2.1	30	96	0	117	57	15	3	23	1.53
49680595--49680692	46	2.1	47	96	3	182	30	4	22	42	1.72
49683956--49684054	49	2.0	50	96	2	182	23	8	42	26	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49697713--49697759	25	2.0	24	87	8	69	42	10	21	25	1.85
49699553--49699602	3	17.0	3	95	4	93	0	32	0	68	0.90
49704253--49704308	24	2.3	25	85	11	73	58	1	5	33	1.31
49712278--49712349	34	2.0	37	82	15	89	54	4	1	40	1.28
49718885--49718923	21	1.9	21	89	5	62	46	7	25	20	1.77
49720914--49720959	11	4.5	10	81	13	58	82	8	8	0	0.84
49720910--49720960	19	2.7	18	81	6	57	80	9	9	0	0.91
49720914--49720959	20	2.2	21	85	11	60	82	8	8	0	0.84
49721430--49721491	28	2.3	26	76	15	63	70	0	14	14	1.16
49722744--49722918	88	2.0	88	91	0	287	28	21	24	25	1.99
49723095--49723417	100	3.2	100	89	0	486	29	19	23	27	1.98
49723100--49723417	50	6.4	50	74	7	268	29	19	23	27	1.98
49724892--49724936	19	2.3	20	81	7	58	33	8	0	57	1.30
49724888--49724937	21	2.5	20	78	9	59	32	8	0	60	1.26
49725166--49725232	29	2.4	28	82	5	80	32	7	1	58	1.35
49725202--49725274	18	3.9	19	76	15	64	35	1	1	61	1.13
49727254--49727292	21	1.9	21	89	5	62	46	7	25	20	1.77
49729283--49729328	11	4.5	10	81	13	58	82	8	8	0	0.84
49729279--49729329	19	2.7	18	81	6	57	80	9	9	0	0.91
49729283--49729328	20	2.2	21	85	11	60	82	8	8	0	0.84
49729799--49729860	28	2.3	26	76	15	63	70	0	14	14	1.16
49729782--49730084	150	2.0	151	98	0	590	51	10	21	16	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49729949--49730010	28	2.3	26	76	15	63	70	0	14	14	1.16
49734096--49734162	29	2.4	28	82	5	80	32	7	1	58	1.35
49734132--49734204	18	3.9	19	76	15	64	35	1	1	61	1.13
49750919--49750949	15	2.0	15	93	6	53	22	19	0	58	1.40
49763139--49763186	22	2.2	22	88	3	71	39	0	0	60	0.97
49763145--49763198	22	2.4	22	75	6	54	46	0	1	51	1.11
49763275--49763333	31	1.9	30	86	6	82	57	3	5	33	1.37
49763924--49763955	6	4.9	7	92	7	50	53	0	0	46	1.00
49772105--49772178	29	2.5	31	72	14	75	35	6	12	45	1.68
49773218--49775000	891	2.0	891	100	0	3566	40	7	8	43	1.63
49775211--49775235	9	2.8	9	100	0	50	68	0	0	32	0.90
49775214--49775263	20	2.5	20	79	20	61	66	2	4	28	1.21
49776676--49776741	28	2.4	28	85	14	100	42	6	0	51	1.26
49777431--49777492	18	3.8	16	76	20	65	45	1	1	51	1.20
49777432--49777492	32	1.9	32	93	0	104	45	1	1	50	1.21
49777432--49777479	14	3.1	14	77	16	51	45	2	2	50	1.25
49777914--49777987	27	2.7	27	87	0	103	20	33	20	25	1.97
49777914--49777996	27	3.1	27	85	0	94	19	31	22	26	1.98
49789241--49789279	3	13.3	3	89	5	62	0	30	0	69	0.89
49789242--49789286	15	2.9	16	80	12	58	0	31	0	68	0.89
49789812--49790018	101	2.0	102	99	0	407	44	7	7	40	1.62
49799569--49799631	30	2.1	30	93	0	108	57	11	4	26	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49803537--49803569	13	2.4	14	90	5	50	66	0	3	30	1.06
49812230--49812269	9	4.3	9	90	3	53	67	5	0	27	1.11
49812230--49812262	3	11.0	3	93	0	57	66	3	0	30	1.06
49824077--49824124	24	2.0	25	87	4	71	20	6	6	66	1.36
49824390--49824437	24	2.0	25	83	4	62	68	6	6	18	1.32
49826768--49826819	24	2.2	24	85	0	68	44	3	1	50	1.31
49827230--49827344	57	2.0	57	98	0	221	32	13	13	40	1.83
49827422--49827455	17	2.0	17	88	11	52	44	2	0	52	1.16
49831237--49831261	11	2.3	11	100	0	50	40	0	0	60	0.97
49836854--49836915	30	2.1	30	84	6	81	43	3	37	16	1.64
49836957--49836984	9	3.1	9	100	0	56	32	10	10	46	1.73
49837038--49837068	9	3.4	9	90	0	53	38	22	12	25	1.90
49838989--49839040	10	4.9	11	85	4	72	55	0	0	44	0.99
49838989--49839078	30	3.0	30	87	8	112	58	0	2	38	1.10
49838994--49839095	30	3.4	31	78	9	95	61	0	1	36	1.07
49839758--49839788	1	31.0	1	100	0	62	0	0	0	100	0.00
49845981--49846022	21	2.0	22	85	4	59	23	4	14	57	1.56
49846658--49846742	39	2.2	39	97	0	161	31	16	16	35	1.91
49848787--49848811	7	3.6	7	100	0	50	24	0	0	76	0.80
49849117--49849160	22	2.0	23	81	4	54	50	2	4	43	1.35
49849829--49849867	17	2.2	18	86	13	55	46	0	5	48	1.24
49851006--49851048	21	2.0	21	86	8	61	55	4	0	39	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49851131--49851389	129	2.0	130	99	0	511	39	10	8	41	1.71
49853511--49853547	19	1.9	19	89	10	58	64	0	29	5	1.15
49867963--49867996	17	1.9	18	94	5	61	41	0	2	55	1.15
49870560--49870604	15	2.9	15	80	6	54	68	0	4	26	1.08
49872183--49872239	6	9.8	6	92	3	64	89	0	10	0	0.49
49872183--49872233	11	4.4	12	92	5	79	92	0	7	0	0.40
49872185--49872229	1	45.0	1	90	0	72	95	0	4	0	0.26
49873002--49873062	27	2.3	27	88	0	95	16	0	68	14	1.21
49873010--49873071	15	4.3	15	74	12	58	16	0	72	11	1.12
49873043--49873085	15	2.8	15	85	3	59	23	0	72	4	1.04
49873093--49873715	316	2.0	316	99	0	1237	33	15	22	29	1.95
49884423--49884516	19	4.8	19	83	5	125	37	10	14	37	1.81
49884423--49884516	40	2.4	38	84	6	125	37	10	14	37	1.81
49884423--49884543	21	6.0	21	78	17	96	37	9	15	38	1.80
49892815--49892907	41	2.2	42	84	1	116	29	16	23	31	1.96
49892994--49893029	3	12.0	3	93	0	63	63	0	2	33	1.08
49895722--49895828	46	2.3	46	93	0	178	37	8	26	28	1.85
49895804--49895853	25	2.0	25	96	0	91	38	8	26	28	1.84
49895838--49895913	40	1.9	40	94	0	134	34	3	28	32	1.76
49895722--49895927	111	1.8	114	85	8	294	35	7	26	30	1.85
49902208--49902287	42	1.9	42	87	2	117	27	2	25	45	1.66
49902333--49902444	33	3.4	32	84	6	152	41	0	14	44	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49902503--49902770	125	2.1	126	90	0	412	36	18	14	29	1.91
49905826--49905882	25	2.3	23	81	18	71	50	3	1	43	1.29
49906283--49906320	18	2.1	18	95	0	67	39	10	26	23	1.87
49908070--49908133	30	2.1	30	97	0	119	39	3	29	28	1.72
49911610--49911729	63	2.0	60	85	8	161	42	4	4	49	1.41
49911596--49911689	21	4.4	20	69	14	64	41	2	3	53	1.29
49911705--49911756	17	3.1	17	72	10	52	42	3	0	53	1.19
49915373--49915407	18	1.9	18	88	0	52	25	14	28	31	1.95
49920776--49920851	22	3.4	23	83	10	95	26	30	1	42	1.64
49920775--49920851	33	2.3	34	82	10	104	25	29	1	42	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163