genome.fa.s4.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  41  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13326521--13326674	7	21.7	7	67	12	64	20	1	36	42	1.60
13327117--13327281	35	4.8	35	76	8	158	40	18	23	18	1.91
13327155--13327294	69	2.0	68	83	5	174	42	17	22	17	1.89
13327536--13327590	21	2.6	21	94	0	101	38	12	5	43	1.66
13340101--13340149	26	1.9	25	87	4	71	42	0	2	55	1.11
13340148--13340178	16	1.9	16	93	0	53	35	6	3	54	1.42
13340344--13340374	16	1.9	16	93	0	53	38	6	3	51	1.44
13340363--13340410	20	2.4	20	75	10	53	41	12	0	45	1.42
13340369--13340406	19	2.0	20	84	5	51	44	15	0	39	1.47
13352235--13352274	18	2.2	18	86	8	55	20	0	12	67	1.22
13352276--13352308	11	2.9	12	86	13	52	66	0	0	33	0.92
13368426--13368495	36	1.9	37	97	2	133	37	17	22	22	1.94
13369794--13369832	20	2.0	20	85	9	55	33	15	7	43	1.75
13378528--13378600	36	2.0	36	100	0	146	30	17	27	24	1.97
13379533--13379563	16	1.9	16	93	0	53	35	0	9	54	1.33
13381422--13381451	8	3.8	8	100	0	60	33	0	0	66	0.92
13381422--13381465	16	2.6	17	83	13	56	34	0	0	65	0.93
13381424--13381474	24	2.1	25	85	10	70	31	1	0	66	1.03
13382523--13382580	30	1.9	30	89	0	89	41	3	24	31	1.71
13382851--13382913	14	4.6	14	70	18	60	39	6	15	38	1.73
13389540--13389583	18	2.4	18	85	7	54	11	4	2	81	0.92
13389556--13389583	6	4.7	6	100	0	56	14	0	0	85	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13395273--13395307	16	2.2	16	89	0	52	20	5	17	57	1.60
13395280--13395332	23	2.3	24	80	9	65	20	5	11	62	1.49
13395547--13395603	20	2.8	21	77	17	57	19	5	5	70	1.26
13406677--13406704	2	14.0	2	100	0	56	50	0	50	0	1.00
13408418--13408451	16	2.1	17	88	5	52	44	0	2	52	1.16
13408418--13408460	17	2.6	16	85	3	59	41	0	2	55	1.12
13410463--13410515	21	2.6	21	80	14	67	16	15	0	67	1.23
13410463--13410504	21	2.0	22	90	4	68	21	14	0	64	1.29
13424191--13424259	29	2.3	31	82	7	90	28	7	20	43	1.78
13432901--13432944	18	2.2	21	88	11	67	40	0	4	54	1.21
13432992--13433190	104	1.9	104	100	0	398	35	14	13	37	1.85
13459734--13460387	88	7.4	88	88	0	824	27	26	24	21	1.99
13459979--13460118	45	3.2	45	68	8	133	30	22	23	23	1.99
13460196--13460337	44	3.3	43	67	7	133	25	29	27	17	1.97
13460398--13460574	44	4.0	44	88	0	228	28	18	24	28	1.98
13467067--13467127	30	2.0	30	96	0	113	21	21	6	50	1.70
13467472--13467620	73	2.0	73	98	0	289	49	10	20	19	1.77
13481842--13481893	27	2.0	26	85	11	70	40	9	5	44	1.61
13491155--13491187	6	5.5	6	96	0	57	0	63	0	36	0.95
13490994--13491280	157	1.8	157	99	0	565	19	36	11	32	1.88
13492739--13492785	18	2.7	18	86	3	60	29	0	0	70	0.88
13493676--13493856	87	2.1	88	98	1	355	44	6	8	40	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13497116--13497143	5	5.6	5	100	0	56	57	0	0	42	0.99
13499532--13499562	15	2.1	15	100	0	62	45	38	0	16	1.47
13503117--13503163	21	2.2	21	88	0	67	17	27	36	19	1.93
13518042--13518078	16	2.3	16	95	0	65	51	13	0	35	1.41
13524171--13524491	95	3.5	91	79	6	305	37	15	9	38	1.79
13524627--13524692	29	2.3	29	84	5	89	60	1	1	36	1.15
13527577--13527636	30	2.0	30	100	0	120	23	16	10	50	1.75
13527579--13527643	30	2.2	30	94	0	112	26	13	7	52	1.67
13527893--13527948	21	2.9	18	69	23	51	60	3	3	32	1.31
13527905--13527959	21	2.6	21	77	5	58	65	1	1	30	1.13
13528144--13528168	13	1.9	13	100	0	50	36	0	0	64	0.94
13528242--13528277	11	3.2	11	88	7	54	19	5	0	75	1.00
13528250--13528277	12	2.3	12	100	0	56	14	7	0	78	0.95
13528253--13528306	21	2.6	20	80	13	56	20	3	0	75	0.95
13528214--13528306	41	2.3	40	81	7	109	23	3	1	72	1.06
13528214--13528306	39	2.3	40	75	14	102	23	3	1	72	1.06
13528214--13528309	20	4.8	20	70	17	74	23	3	1	71	1.06
13528275--13528318	20	2.2	20	84	4	54	22	2	2	72	1.07
13528639--13528666	13	2.2	13	100	0	56	0	0	7	92	0.37
13544180--13544205	11	2.4	11	100	0	52	38	0	0	61	0.96
13555921--13555962	21	2.0	21	85	4	57	33	4	0	61	1.17
13556734--13556762	14	2.0	15	93	6	51	55	6	6	31	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13557510--13557609	51	1.9	52	93	2	175	54	16	1	29	1.49
13559837--13559898	30	2.1	30	100	0	124	25	22	19	32	1.97
13562894--13562956	31	2.0	31	87	6	92	25	17	20	36	1.94
13563405--13563510	55	1.9	55	98	0	203	22	11	21	44	1.84
13565372--13565437	22	2.9	22	73	8	60	34	12	16	36	1.86
13565933--13566025	46	2.0	46	93	0	159	40	13	24	20	1.89
13586675--13587019	50	6.9	50	73	0	285	23	20	24	32	1.98
13586648--13587014	100	3.7	100	88	0	529	22	19	23	33	1.97
13588498--13588549	7	7.6	7	76	20	56	13	15	1	69	1.28
13589434--13589482	18	2.7	18	77	0	53	6	8	10	75	1.18
13591035--13591064	15	2.0	15	93	0	51	50	6	20	23	1.71
13596505--13596628	65	1.9	65	88	6	189	33	7	16	43	1.75
13596796--13596936	41	3.4	41	91	0	228	25	16	24	33	1.96
13596792--13596966	82	2.1	82	84	3	228	25	18	24	32	1.97
13599015--13599042	5	5.6	5	100	0	56	39	21	0	39	1.54
13603320--13603363	14	3.1	14	96	0	79	29	25	15	29	1.96
13603345--13603574	102	2.3	102	89	1	354	30	24	14	30	1.95
13603341--13603578	51	4.7	51	79	2	264	30	24	14	30	1.95
13604049--13604113	30	2.1	31	80	11	80	29	23	6	41	1.78
13614388--13615046	109	6.1	109	94	0	1090	31	16	17	34	1.93
13615955--13615989	16	2.2	16	89	0	52	20	17	17	45	1.85
13622388--13622499	44	2.5	44	84	5	138	27	20	22	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13624195--13624229	3	11.7	3	93	0	61	34	2	0	62	1.10
13627645--13627741	28	3.5	28	66	14	74	58	15	7	18	1.59
13627649--13627764	55	2.1	55	95	1	205	57	18	6	17	1.61
13630151--13630194	22	2.0	21	86	4	61	13	18	25	43	1.86
13630265--13630548	43	6.7	43	82	2	295	26	32	17	24	1.97
13630265--13630552	86	3.4	85	80	1	335	26	31	17	24	1.97
13630265--13630548	129	2.2	128	81	3	329	26	32	17	24	1.97
13634510--13634636	67	1.9	67	93	3	218	45	25	1	27	1.62
13635166--13635316	41	3.7	41	91	1	232	27	29	20	22	1.99
13635356--13635490	40	3.4	40	87	2	193	21	24	19	34	1.96
13648517--13648561	6	7.5	6	97	0	72	4	17	60	17	1.53
13660573--13660673	29	3.5	29	83	0	112	39	17	9	32	1.83
13661956--13662012	25	2.2	26	78	3	62	61	3	3	31	1.30
13662026--13662105	37	2.2	37	84	10	110	60	6	0	33	1.22
13664880--13664926	20	2.3	20	96	0	85	55	8	10	25	1.62
13667521--13667569	20	2.5	19	83	3	53	28	2	6	63	1.30
13667793--13667999	43	4.8	43	77	5	179	27	29	17	24	1.98
13667793--13668011	86	2.6	85	82	7	225	27	29	17	25	1.97
13669466--13669508	13	3.3	13	80	0	50	37	2	4	55	1.33
13672925--13672983	7	8.4	7	86	0	82	30	49	1	18	1.58
13673196--13673267	35	2.1	35	100	0	144	31	5	2	59	1.35
13673399--13673593	41	4.7	41	88	0	264	30	26	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13673652--13673735	40	2.1	39	82	6	98	21	25	21	32	1.98
13674738--13675684	500	1.9	500	100	0	1894	26	17	20	35	1.94
13678810--13678857	7	6.7	7	88	4	69	85	0	10	4	0.73
13678810--13678857	15	3.3	14	85	5	60	85	0	10	4	0.73
13681007--13681706	88	8.0	88	88	0	990	26	22	26	24	2.00
13681693--13681965	128	2.1	128	89	2	415	32	20	24	23	1.98
13683421--13683469	20	2.5	19	83	3	53	28	2	6	63	1.30
13686305--13686339	19	1.9	19	88	11	56	48	5	0	45	1.26
13688763--13688923	44	3.8	44	84	9	226	26	22	21	30	1.99
13688790--13688910	38	3.0	38	89	7	161	23	23	19	32	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163