genome.fa.s4.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  46  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14830438--14830511	4	17.5	4	81	15	55	21	4	0	74	0.98
14830445--14830504	5	12.2	5	81	11	54	20	5	0	75	0.99
14830435--14830519	36	2.4	36	75	19	90	22	4	0	72	1.02
14831520--14831584	24	2.8	24	73	19	64	75	1	1	21	0.97
14831535--14831583	20	2.5	20	83	6	55	77	2	2	18	0.96
14832587--14832623	9	4.1	9	85	0	56	48	13	10	27	1.75
14836301--14836351	22	2.3	22	82	0	66	19	29	13	37	1.90
14843157--14843233	40	2.0	40	82	12	97	40	3	23	32	1.73
14845735--14845836	39	2.6	40	81	6	109	15	24	31	28	1.96
14852203--14852235	16	2.0	17	88	5	50	45	0	0	54	0.99
14863212--14863244	16	2.0	16	94	5	57	75	6	0	18	1.00
14868219--14868267	22	2.2	22	85	7	64	20	24	34	20	1.96
14871959--14871997	18	2.2	18	85	0	51	12	10	5	71	1.28
14888595--14888630	18	2.1	18	89	5	56	38	27	16	16	1.90
14896138--14896192	19	2.9	19	76	13	60	36	5	3	54	1.41
14906564--14906601	6	6.2	6	90	3	58	0	60	0	39	0.97
14906566--14906601	18	2.0	18	100	0	72	0	61	0	38	0.96
14906661--14906710	25	2.0	25	92	0	82	4	36	4	56	1.37
14909413--14909467	21	2.7	20	83	8	74	29	34	9	27	1.87
14911877--14911905	9	3.2	9	100	0	58	79	0	20	0	0.74
14918944--14919032	44	2.0	43	89	2	133	37	8	3	50	1.51
14920853--14920902	17	3.0	16	91	8	82	80	6	14	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14921683--14921739	28	2.0	28	96	0	105	36	29	10	22	1.88
14927313--14927373	15	4.1	15	78	0	59	55	3	11	29	1.51
14927826--14927906	40	2.0	40	97	0	153	46	18	12	22	1.82
14931090--14931143	3	18.0	3	96	0	99	66	1	0	31	1.02
14935678--14935717	15	2.5	17	80	19	50	15	32	0	52	1.43
14938856--14938908	27	2.0	27	96	0	97	24	35	15	24	1.94
14938858--14938958	27	3.7	27	81	2	96	27	30	13	27	1.94
14938948--14939347	67	6.0	66	81	4	403	24	24	16	35	1.95
14938942--14939346	134	3.0	132	83	3	456	23	24	16	34	1.95
14938965--14939347	200	1.9	200	82	5	488	23	24	16	35	1.95
14944389--14944417	12	2.3	13	94	5	51	72	3	17	6	1.21
14950382--14950551	85	2.0	85	98	0	331	38	8	13	39	1.75
14951852--14951933	25	3.3	25	77	16	89	26	24	19	29	1.98
14956694--14956726	15	2.3	15	89	5	50	39	27	0	33	1.57
14961172--14961197	5	5.2	5	100	0	52	0	19	0	80	0.71
14964645--14964674	15	2.0	15	93	0	51	33	20	3	43	1.68
14967483--14967564	41	2.0	41	97	0	155	42	14	15	26	1.86
14973176--14973238	28	2.2	29	83	11	76	46	1	3	49	1.27
14976852--14976895	2	22.0	2	95	0	79	47	2	0	50	1.13
14979444--14979477	17	1.9	17	88	5	50	64	0	0	35	0.94
14979599--14979662	3	21.3	3	78	0	65	57	3	1	37	1.24
14980290--14980336	3	15.7	3	81	0	58	59	4	0	36	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14987335--14987377	17	2.5	16	82	14	50	41	0	2	55	1.12
14992765--14992854	39	2.3	39	84	3	108	37	1	5	55	1.31
14995373--14995412	20	2.0	20	90	0	62	30	10	10	50	1.69
14997837--14997867	8	3.9	8	100	0	62	38	0	0	61	0.96
14998095--14998465	123	3.0	126	85	7	549	30	15	21	32	1.94
15000309--15000525	116	1.9	115	93	0	371	42	9	9	39	1.69
15000538--15001019	29	19.2	24	72	22	116	29	0	23	46	1.58
15000528--15000591	31	2.1	31	85	5	85	26	0	26	46	1.53
15000565--15000668	18	5.9	18	64	27	53	29	0	23	46	1.59
15000611--15000698	23	4.3	18	67	27	59	30	2	21	45	1.64
15000650--15000911	29	8.9	29	70	16	150	29	1	24	45	1.61
15000579--15001138	153	3.6	153	79	12	560	29	0	23	46	1.58
15000734--15000851	23	6.3	18	67	27	50	28	1	22	46	1.62
15000907--15001066	29	5.6	29	73	24	142	26	0	24	48	1.51
15000934--15000973	21	1.9	21	100	0	80	25	0	22	52	1.47
15000858--15001096	50	4.5	50	77	18	218	27	0	24	48	1.52
15001020--15001204	23	7.6	23	72	16	124	25	1	24	48	1.61
15001118--15001184	30	2.2	30	81	0	80	20	2	25	50	1.62
15001210--15001295	44	1.9	45	90	2	138	48	12	0	38	1.41
15001720--15001754	18	1.9	18	94	0	61	34	8	31	25	1.86
15003477--15003532	22	2.5	22	94	2	94	39	0	30	30	1.57
15003489--15003549	10	5.6	11	75	21	58	42	0	34	22	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15009229--15009257	14	2.0	15	93	6	51	62	6	0	31	1.22
15018624--15018666	18	2.4	18	80	0	50	32	32	6	27	1.84
15020319--15020572	138	1.9	135	81	4	312	24	29	14	31	1.95
15021458--15021490	16	2.0	17	94	5	59	30	0	0	69	0.88
15021720--15021772	22	2.4	23	84	6	74	67	0	0	32	0.91
15021919--15021965	19	2.6	18	77	12	51	29	0	6	63	1.19
15022983--15023024	7	6.0	7	94	0	75	28	30	0	40	1.57
15033653--15033731	11	7.0	11	75	15	72	24	2	0	73	0.96
15033653--15033730	5	15.0	5	80	11	70	24	2	0	73	0.96
15033654--15033731	6	13.7	6	78	15	51	23	2	0	74	0.94
15033653--15033730	16	4.7	16	75	17	70	24	2	0	73	0.96
15036265--15037514	625	2.0	625	99	0	2482	32	12	18	36	1.88
15039294--15039378	23	3.5	23	75	17	75	43	10	18	27	1.83
15039312--15039375	13	5.0	13	79	12	71	45	10	20	23	1.82
15039294--15039378	12	7.0	11	75	18	64	43	10	18	27	1.83
15051246--15051273	5	5.6	5	100	0	56	17	0	0	82	0.68
15059733--15059760	13	2.2	13	100	0	56	39	0	14	46	1.44
15061024--15061123	19	5.4	19	89	2	141	38	7	18	37	1.78
15061024--15061122	38	2.7	38	93	3	166	37	7	18	37	1.78
15061245--15061366	59	2.0	60	95	1	219	54	4	23	17	1.59
15066487--15066602	58	2.0	58	98	0	223	53	5	25	16	1.63
15082847--15082981	66	2.0	66	80	8	150	19	27	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15093775--15094049	111	2.5	111	82	6	306	27	34	16	22	1.95
15099273--15099726	226	2.0	227	99	0	901	31	17	7	43	1.77
15099703--15099748	20	2.2	21	84	3	58	26	0	2	71	0.97
15101925--15101955	16	1.9	16	93	0	53	48	0	9	41	1.36
15105842--15105927	41	2.1	41	91	0	136	22	26	20	30	1.98
15107631--15107655	13	1.9	13	100	0	50	40	24	4	32	1.73
15109363--15109446	25	3.3	24	74	22	66	32	19	25	23	1.97
15109536--15109595	26	2.3	26	85	5	77	33	25	25	16	1.96
15112868--15112897	16	1.9	16	93	6	53	50	20	0	30	1.49
15114003--15114153	33	4.5	33	89	1	203	38	36	8	16	1.80
15115914--15116011	28	3.5	28	87	0	133	30	11	26	31	1.91
15122287--15122384	40	2.5	40	81	0	106	37	19	20	22	1.94
15122459--15122741	40	7.0	40	79	7	268	25	18	25	30	1.98
15122458--15122773	40	7.8	41	81	2	264	25	18	25	30	1.98
15122462--15122742	81	3.5	81	77	10	270	24	18	25	30	1.98
15123225--15123253	15	2.0	15	93	6	51	20	0	41	37	1.53
15123002--15123700	281	2.4	290	85	7	911	30	2	23	43	1.68
15123474--15123522	7	6.9	7	86	4	71	26	0	32	40	1.56
15123466--15123522	22	2.6	22	86	2	71	26	0	31	42	1.56
15123776--15124000	112	2.0	113	99	0	443	38	5	12	44	1.65
15124379--15124533	83	1.9	83	80	8	181	30	14	18	36	1.90
15128299--15128523	43	5.3	43	84	2	240	28	17	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15132075--15132137	30	2.1	30	100	0	126	19	6	12	61	1.51
15132356--15132394	19	2.1	19	100	0	78	58	10	25	5	1.51
15138375--15138438	31	2.1	31	96	0	119	20	23	21	34	1.97
15138550--15138613	32	2.0	32	96	0	119	37	14	9	39	1.78
15143843--15144047	42	4.9	42	80	1	214	40	18	18	23	1.91
15146214--15146341	41	3.0	41	81	5	141	32	28	17	21	1.96
15146183--15146341	84	1.9	84	82	10	200	30	27	18	23	1.97
15146183--15146338	43	3.7	43	75	13	153	29	28	18	23	1.98
15149294--15149403	55	2.0	55	96	0	202	39	10	20	30	1.86
15156820--15156932	56	2.0	56	89	3	174	53	12	6	28	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163