genome.fa.s4.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  20  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6733682--6733737	16	3.6	16	76	9	53	26	0	17	55	1.43
6733797--6733914	21	5.5	21	77	15	109	25	0	28	45	1.54
6733885--6733995	33	3.3	34	84	5	127	29	0	27	43	1.55
6733977--6734040	22	2.9	23	79	6	78	18	0	23	57	1.40
6734037--6734083	22	2.0	24	88	8	71	17	0	23	59	1.37
6734006--6734076	36	1.9	37	85	2	99	18	0	25	56	1.42
6734081--6734114	15	2.3	15	95	5	61	41	0	14	44	1.45
6734183--6734266	22	3.8	21	77	19	91	17	0	26	55	1.42
6734204--6734266	15	4.2	15	71	17	51	17	0	26	55	1.42
6734205--6734350	14	10.3	14	73	10	82	20	0	28	50	1.54
6734227--6734350	7	17.7	7	67	9	65	20	0	29	48	1.56
6734205--6734267	30	2.1	30	85	2	83	19	0	26	53	1.45
6734184--6734357	21	8.1	21	71	12	88	20	0	27	51	1.51
6734424--6734472	14	3.4	14	80	5	53	24	0	26	48	1.51
6734368--6734472	22	4.9	21	70	15	72	28	0	22	47	1.58
6734417--6734497	36	2.2	37	82	10	96	27	0	25	46	1.53
6734614--6734697	22	3.8	22	82	6	98	22	0	21	55	1.43
6734595--6734690	15	6.6	14	67	11	59	22	0	21	55	1.44
6734688--6734750	33	1.9	33	96	0	117	25	0	30	44	1.54
6734742--6734792	7	7.3	7	80	8	59	15	0	33	50	1.44
6734742--6734792	14	3.6	14	84	10	68	15	0	33	50	1.44
6734742--6734792	21	2.5	20	84	9	66	15	0	33	50	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6734748--6734794	21	2.2	22	88	3	69	17	0	29	53	1.44
6734760--6734854	23	4.4	22	79	11	81	25	1	30	43	1.62
6734754--6734831	7	10.7	7	74	10	50	24	1	28	46	1.61
6734754--6734857	21	4.8	22	77	15	83	25	0	29	44	1.61
6734782--6734857	22	3.5	22	82	12	77	28	1	27	42	1.64
6734822--6734918	33	2.9	34	84	4	117	28	0	28	42	1.56
6734883--6734950	21	3.2	20	77	6	55	23	0	26	50	1.50
6735013--6735282	22	12.7	21	68	16	76	24	0	25	49	1.50
6735017--6735063	15	3.2	15	81	3	51	23	0	25	51	1.49
6735120--6735174	7	7.9	7	82	8	67	23	0	30	45	1.53
6734511--6735698	592	2.0	586	93	3	2048	25	0	26	47	1.55
6735187--6735282	15	6.6	14	67	11	59	22	0	21	55	1.44
6735215--6735283	22	3.2	22	80	10	79	23	0	21	55	1.44
6735280--6735342	33	1.9	33	96	0	117	25	0	30	44	1.54
6735334--6735384	7	7.3	7	80	8	59	15	0	33	50	1.44
6735334--6735384	14	3.6	14	84	10	68	15	0	33	50	1.44
6735334--6735384	21	2.5	20	84	9	66	15	0	33	50	1.44
6735340--6735386	21	2.2	22	88	3	69	17	0	29	53	1.44
6735352--6735446	23	4.4	22	79	11	81	25	1	30	43	1.62
6735346--6735423	7	10.7	7	74	10	50	24	1	28	46	1.61
6735346--6735449	21	4.8	22	77	15	83	25	0	29	44	1.61
6735374--6735449	22	3.5	22	82	12	77	28	1	27	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6735414--6735499	33	2.6	34	85	5	104	29	0	27	43	1.56
6734626--6734939	147	2.1	146	81	7	334	25	0	28	46	1.56
6735641--6735887	33	7.4	33	94	1	395	26	0	30	42	1.56
6735866--6735950	22	3.8	22	73	17	86	18	0	24	56	1.42
6735905--6736113	7	29.4	7	70	17	83	22	0	27	49	1.50
6735905--6736386	14	33.7	14	66	16	98	22	0	27	49	1.52
6735912--6735957	22	2.0	21	84	12	56	17	0	30	52	1.45
6735911--6736511	21	28.6	21	67	18	116	22	0	28	47	1.54
6735954--6736041	35	2.5	34	83	12	108	22	0	27	50	1.50
6736120--6736181	31	2.0	31	87	0	88	24	0	35	40	1.55
6736250--6736345	23	4.4	22	76	10	90	23	0	22	53	1.47
6736169--6736358	94	2.0	95	85	3	258	22	0	25	52	1.51
6736218--6736366	65	2.3	66	81	5	169	22	0	25	51	1.53
6736240--6736328	43	2.1	44	89	4	137	21	0	24	53	1.45
6736329--6736386	7	8.4	7	90	1	91	24	0	29	46	1.53
6736439--6736511	14	5.1	14	70	15	60	19	0	32	47	1.49
6736439--6736569	29	4.6	29	70	12	90	22	0	28	48	1.56
6736608--6736660	22	2.5	22	87	3	72	20	0	26	52	1.46
6736647--6736701	7	7.9	7	82	8	67	23	0	30	45	1.53
6736733--6736811	22	3.5	22	75	13	72	18	0	25	55	1.43
6736733--6736816	44	1.9	44	82	4	107	20	0	25	54	1.44
6736807--6736869	33	1.9	33	96	0	117	25	0	30	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6736861--6736911	7	7.3	7	80	8	59	15	0	33	50	1.44
6736861--6736911	14	3.6	14	84	10	68	15	0	33	50	1.44
6736861--6736911	21	2.5	20	84	9	66	15	0	33	50	1.44
6736867--6736913	21	2.2	22	88	3	69	17	0	29	53	1.44
6736879--6736973	23	4.4	22	79	11	81	25	1	30	43	1.62
6736726--6737012	147	2.0	147	84	2	380	24	0	29	45	1.56
6736873--6736950	7	10.7	7	74	10	50	24	1	28	46	1.61
6736873--6736976	21	4.8	22	77	15	83	25	0	29	44	1.61
6736901--6736976	22	3.5	22	82	12	77	28	1	27	42	1.64
6736941--6737037	33	2.9	34	83	4	117	28	0	28	42	1.56
6736726--6737058	147	2.3	146	82	4	366	23	0	29	46	1.55
6737008--6737069	21	2.9	21	76	11	63	20	0	25	53	1.46
6737136--6737177	15	2.9	15	82	3	50	19	0	30	50	1.48
6737168--6737290	33	3.7	32	91	4	183	28	0	29	42	1.56
6737168--6737315	66	2.2	68	86	6	203	26	0	29	44	1.54
6737294--6737399	22	4.8	22	74	16	78	19	0	25	54	1.44
6737333--6737436	7	14.7	7	73	16	63	22	0	27	50	1.50
6737346--6737541	14	13.8	14	68	17	84	23	0	28	48	1.51
6737333--6737487	21	7.6	21	69	20	71	23	0	27	49	1.50
6737447--6737541	7	13.4	7	74	9	59	25	0	27	47	1.52
6737447--6737541	43	2.2	43	83	5	113	25	0	27	47	1.52
6737549--6737634	31	2.7	32	81	5	93	22	0	33	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6737592--6737692	22	4.8	22	75	14	88	20	0	27	50	1.55
6737679--6737774	23	4.4	22	74	10	81	23	0	23	52	1.48
6737669--6737757	43	2.1	43	87	4	126	21	0	25	52	1.47
6737598--6737781	94	1.9	95	83	5	239	22	0	26	51	1.52
6737763--6737801	14	2.8	14	88	0	60	17	0	33	48	1.48
6737675--6737808	66	2.0	65	84	7	173	21	0	26	52	1.47
6737854--6738125	14	19.6	14	66	16	86	22	0	29	48	1.56
6737854--6737923	7	9.7	7	76	11	70	17	0	35	47	1.48
6738046--6738125	7	11.4	7	79	9	65	20	0	30	50	1.49
6738157--6738233	22	3.5	22	80	8	86	19	0	24	55	1.43
6738210--6738240	7	4.4	7	100	0	62	12	0	25	61	1.32
6738238--6738300	33	1.9	33	93	0	108	26	0	28	44	1.55
6738222--6738451	74	3.0	73	69	9	190	26	0	29	44	1.54
6738296--6738390	22	4.3	22	80	4	93	25	0	28	46	1.53
6738335--6738389	14	3.8	14	83	7	65	32	0	21	45	1.52
6738151--6738451	155	2.0	147	85	7	399	24	0	27	47	1.52
6738356--6738476	33	3.6	33	82	5	127	28	0	27	44	1.55
6738453--6738508	21	2.6	22	74	2	60	19	0	26	53	1.45
6738312--6738721	225	1.8	224	86	4	594	25	0	27	47	1.55
6738571--6738614	22	2.0	21	91	4	70	31	0	25	43	1.55
6738575--6738621	15	3.2	15	81	3	51	23	0	25	51	1.49
6738612--6738700	32	2.8	32	84	1	115	26	0	30	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6738612--6738694	33	2.5	33	86	1	114	27	0	28	43	1.55
6738681--6738720	21	1.9	21	89	0	62	17	0	32	50	1.47
6738704--6738784	22	3.6	22	76	12	85	19	0	25	54	1.45
6738743--6738964	7	31.4	7	67	16	57	22	0	26	50	1.53
6738750--6738829	21	3.8	21	80	9	65	21	0	28	50	1.49
6738912--6738957	15	3.1	15	81	6	58	19	0	26	54	1.44
6738691--6738964	14	19.1	14	65	17	57	21	0	27	50	1.52
6738956--6739017	27	2.3	27	94	0	106	19	0	37	43	1.51
6738977--6739039	33	1.9	33	90	0	99	22	0	34	42	1.54
6738956--6739044	27	3.1	27	81	15	90	20	0	34	44	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163