genome.fa.s4.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  138  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45034165--45034212	9	5.3	9	92	0	78	41	20	10	27	1.85
45035937--45036049	26	4.5	26	70	17	78	37	23	21	18	1.94
45039789--45039959	77	2.2	77	85	3	229	47	21	9	21	1.79
45043196--45043235	17	2.5	15	88	8	53	55	0	0	45	0.99
45045386--45045454	23	3.0	23	93	0	111	55	20	2	21	1.57
45045975--45046035	30	2.0	30	81	9	70	22	9	18	49	1.77
45055290--45055347	3	19.3	3	100	0	116	32	0	0	67	0.91
45056709--45056757	26	1.9	26	84	12	66	38	0	4	57	1.18
45065302--45065326	12	2.1	12	100	0	50	36	0	32	32	1.58
45066490--45066532	13	3.3	13	84	9	52	34	4	27	32	1.78
45071116--45071140	13	1.9	13	100	0	50	88	0	0	12	0.53
45077423--45077517	32	3.0	32	95	0	163	22	15	15	46	1.84
45078385--45079243	301	2.9	292	80	8	899	41	10	14	34	1.79
45084727--45084805	22	3.4	23	80	15	92	36	20	26	16	1.93
45084771--45084824	25	2.2	25	82	0	63	38	24	22	14	1.91
45124202--45124379	50	3.2	56	83	11	233	33	12	25	28	1.93
45128551--45128665	60	1.9	60	85	3	160	42	3	9	44	1.54
45146423--45146602	81	2.2	81	87	7	283	41	5	13	40	1.66
45148253--45148277	2	12.5	2	100	0	50	48	0	0	52	1.00
45151846--45151897	4	13.0	4	100	0	104	50	25	0	25	1.50
45153924--45154017	45	2.1	45	89	0	143	30	22	19	27	1.98
45161729--45161878	42	3.5	42	80	9	171	30	26	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45161720--45161878	43	3.7	42	80	7	178	31	27	18	23	1.97
45162953--45162977	13	1.9	13	100	0	50	40	24	4	32	1.73
45163429--45163480	20	2.8	18	78	21	63	51	3	1	42	1.31
45163396--45163540	68	2.1	71	82	7	172	50	4	3	42	1.38
45165516--45165605	25	3.6	25	87	0	126	30	20	30	20	1.97
45168092--45168436	25	14.6	25	73	15	272	44	17	13	24	1.84
45168096--45168271	47	3.7	46	84	5	210	43	18	13	24	1.86
45168096--45168443	72	4.9	70	80	11	333	44	17	12	24	1.84
45168116--45168443	47	7.0	47	82	7	309	45	17	12	24	1.83
45179158--45179296	33	4.2	32	68	14	93	30	15	23	30	1.95
45179316--45179366	24	2.1	24	89	7	77	52	5	19	21	1.66
45183135--45183168	6	5.7	6	96	0	59	14	2	0	82	0.79
45195165--45195211	17	2.5	20	83	13	55	38	2	2	57	1.23
45202411--45202580	73	2.3	71	82	7	191	22	22	17	37	1.94
45202411--45202580	37	4.7	37	71	17	117	22	22	17	37	1.94
45204022--45204071	23	2.2	23	81	0	55	28	16	14	42	1.86
45204219--45204252	11	3.0	11	95	4	59	52	2	17	26	1.58
45216871--45216909	17	2.4	16	86	4	51	17	5	2	74	1.12
45242272--45242308	19	1.9	19	100	0	74	32	2	0	64	1.07
45242271--45242315	19	2.3	19	88	3	72	33	2	0	64	1.06
45243737--45243950	46	4.9	46	81	11	259	29	21	14	34	1.93
45243842--45243914	36	2.0	36	91	0	119	28	20	15	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45243796--45243950	82	1.9	82	91	0	256	29	21	13	34	1.92
45279336--45279382	22	2.2	21	77	7	51	31	10	4	53	1.55
45283864--45283926	11	6.1	10	74	9	56	63	1	3	31	1.19
45283870--45283936	31	2.2	31	84	7	84	65	1	1	31	1.10
45284075--45284146	19	3.7	18	74	20	65	62	0	1	36	1.04
45284077--45284146	20	3.5	20	74	18	67	61	0	1	37	1.05
45284079--45284151	21	3.7	20	73	14	62	60	1	1	36	1.14
45284183--45284418	109	2.2	110	96	3	433	39	11	6	42	1.68
45288443--45288470	1	28.0	1	100	0	56	100	0	0	0	0.00
45297563--45297841	125	2.2	124	89	1	441	29	17	23	30	1.97
45302415--45302504	45	2.0	45	95	0	162	20	31	8	40	1.83
45303390--45303426	1	37.0	1	88	0	56	0	2	94	0	0.22
45305583--45305649	34	1.9	35	87	3	100	44	13	8	32	1.75
45308504--45308544	21	2.0	21	85	9	57	46	24	14	14	1.82
45312187--45312227	22	1.9	21	90	5	64	48	4	0	46	1.23
45318245--45318277	12	3.0	11	91	8	50	36	0	3	60	1.12
45320085--45320247	49	3.4	49	89	1	240	22	14	39	23	1.91
45320583--45320635	18	3.2	18	66	33	55	32	7	18	41	1.79
45320582--45320645	31	2.1	31	100	0	128	32	6	18	42	1.76
45320589--45320642	18	3.3	18	67	32	57	31	7	20	40	1.80
45325534--45325559	5	5.2	5	100	0	52	42	19	19	19	1.90
45326252--45326288	9	4.1	9	92	0	65	29	10	13	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45326342--45326372	9	3.4	9	90	0	53	38	22	12	25	1.90
45327080--45327128	25	2.0	25	84	8	64	24	22	18	34	1.96
45341720--45341784	27	2.5	27	92	5	107	46	4	0	49	1.22
45342496--45342533	18	2.1	18	90	0	58	47	0	13	39	1.42
45345497--45345535	18	2.2	18	85	0	51	53	2	10	33	1.48
45345782--45345821	13	3.0	14	82	17	50	72	0	5	22	1.04
45346006--45346058	27	2.0	27	88	3	81	60	9	11	18	1.57
45347220--45347350	53	2.6	52	81	6	142	35	16	19	27	1.94
45347713--45347915	90	2.3	90	81	9	243	28	6	13	51	1.65
45349851--45349882	17	2.0	17	88	11	50	40	0	0	59	0.97
45349966--45350010	14	3.2	14	84	6	56	31	6	0	62	1.21
45350214--45350249	19	2.0	18	89	10	56	47	11	8	33	1.69
45352307--45352346	16	2.5	16	91	0	62	47	2	7	42	1.45
45352419--45352462	9	5.1	9	83	10	65	34	0	9	56	1.31
45352416--45352453	16	2.4	16	90	0	67	36	0	7	55	1.29
45353538--45353578	18	2.4	17	87	4	55	60	4	7	26	1.43
45353520--45353582	17	3.5	17	80	10	72	53	7	7	30	1.58
45356933--45357475	126	4.3	126	92	1	865	26	21	19	32	1.97
45357504--45357711	96	2.2	97	82	4	260	39	20	2	37	1.68
45358616--45358764	77	1.9	76	94	4	264	28	18	17	35	1.93
45366780--45366878	10	10.0	10	74	18	73	51	1	4	43	1.27
45366756--45366871	10	12.0	9	71	19	58	54	0	2	42	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45367138--45367187	20	2.5	20	87	12	68	34	0	2	64	1.05
45369363--45369409	24	1.9	25	86	4	69	12	17	27	42	1.85
45369468--45369527	25	2.4	25	80	2	66	20	13	26	40	1.89
45376927--45376964	18	2.1	19	85	5	51	36	5	21	36	1.76
45386860--45386891	12	2.7	12	100	0	64	43	0	0	56	0.99
45388952--45389498	108	5.1	107	87	3	766	34	18	17	30	1.94
45388952--45389498	215	2.6	215	91	3	874	34	18	17	30	1.94
45389694--45389743	4	12.5	4	76	23	52	76	0	0	24	0.80
45389694--45389745	12	4.3	11	86	13	59	75	0	0	25	0.81
45390031--45390081	3	17.0	3	95	0	93	64	0	1	33	1.05
45390035--45390123	6	15.0	6	95	1	63	49	0	16	33	1.46
45390074--45390118	3	15.0	3	95	0	81	35	0	31	33	1.58
45391416--45391495	37	2.1	38	88	2	117	25	17	22	35	1.95
45393803--45393903	40	2.5	40	81	10	116	43	22	16	16	1.87
45398683--45398843	87	1.9	87	82	2	207	28	16	22	32	1.96
45398711--45398883	87	2.0	88	80	3	197	30	13	23	32	1.94
45401435--45401614	93	1.9	93	95	0	324	38	11	13	36	1.81
45403136--45403167	2	16.0	2	93	0	55	53	0	46	0	1.00
45404367--45404422	21	2.7	21	82	0	67	26	8	35	28	1.87
45409173--45409230	9	6.4	9	86	7	82	43	18	10	27	1.83
45409333--45409392	18	3.4	18	83	4	68	16	3	38	41	1.65
45410761--45410798	2	19.0	2	94	0	67	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45411612--45411649	18	2.2	18	90	4	60	76	5	7	10	1.15
45415209--45416472	423	3.0	419	92	1	2140	35	16	18	29	1.93
45422372--45422462	7	12.9	7	69	11	51	18	1	34	46	1.57
45422421--45422462	20	2.0	21	90	4	68	16	2	33	47	1.60
45422479--45422511	16	2.1	16	88	11	50	42	0	0	57	0.98
45422733--45422790	28	2.1	28	83	6	73	43	0	3	53	1.17
45422743--45422796	27	2.0	27	85	7	74	37	1	3	57	1.27
45422743--45422796	28	2.0	27	88	3	81	37	1	3	57	1.27
45426795--45426952	43	3.7	43	87	0	208	22	15	27	34	1.95
45427086--45427198	43	2.6	43	81	0	136	22	16	25	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163