genome.fa.s4.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  117  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37763188--37763254	27	2.5	27	82	0	80	31	17	26	23	1.97
37779332--37779408	41	1.9	39	86	5	109	59	3	1	35	1.24
37779334--37779409	19	3.8	19	70	10	71	61	3	1	32	1.22
37779579--37779624	20	2.2	20	84	7	56	28	4	8	58	1.47
37779591--37779658	19	3.5	20	84	6	95	30	5	2	60	1.35
37779593--37779674	39	2.1	39	86	4	112	28	4	3	63	1.32
37779843--37779917	29	2.7	28	84	8	91	34	0	1	64	1.02
37783010--37783298	147	2.0	147	96	0	533	38	24	11	26	1.89
37784286--37784333	22	2.2	22	88	0	69	12	6	18	62	1.50
37799733--37799762	13	2.3	13	94	0	51	23	10	16	50	1.75
37815414--37815451	18	2.1	18	95	0	67	47	7	15	28	1.74
37824058--37824101	11	3.8	11	80	11	52	31	0	4	63	1.14
37824506--37824580	39	1.9	39	97	0	141	41	0	33	25	1.56
37825567--37826198	44	14.7	44	77	12	532	27	18	25	28	1.98
37825740--37825804	34	1.9	34	93	0	112	23	23	24	29	1.99
37826152--37826420	88	3.1	88	68	11	219	30	18	25	25	1.98
37825859--37826364	220	2.3	220	92	3	842	29	19	24	26	1.99
37825777--37826374	44	13.7	44	72	12	199	28	19	25	26	1.98
37826296--37826395	44	2.3	44	84	3	130	25	21	25	29	1.99
37826209--37826497	88	3.3	86	70	9	260	28	20	26	25	1.99
37826473--37826634	44	3.7	45	76	4	143	29	17	22	30	1.97
37826123--37826541	176	2.4	176	86	3	549	28	18	25	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37826453--37826634	87	2.1	88	80	5	199	30	18	22	29	1.97
37826123--37826590	176	2.7	175	83	5	509	28	19	25	26	1.99
37827186--37827250	21	3.1	21	100	0	130	38	9	13	38	1.77
37829815--37829959	49	3.0	48	84	2	173	28	26	20	24	1.99
37830393--37830447	28	2.0	28	81	0	65	18	20	16	45	1.86
37831271--37831337	34	1.9	35	84	3	91	32	8	13	44	1.75
37833140--37833187	23	2.0	24	84	4	62	66	6	6	20	1.36
37842329--37842380	2	26.0	2	100	0	104	50	0	0	50	1.00
37842573--37842615	11	3.9	11	75	0	50	16	13	11	58	1.64
37849428--37849580	76	2.0	77	98	1	299	41	3	5	49	1.43
37853584--37853629	7	6.6	7	84	0	56	36	23	4	34	1.75
37853686--37853736	7	7.4	7	78	10	52	29	29	11	29	1.92
37853790--37853846	29	2.0	29	89	0	87	31	7	22	38	1.81
37853794--37853865	29	2.5	28	78	10	74	31	9	22	36	1.87
37853839--37853879	21	2.0	21	90	0	64	26	12	26	34	1.92
37858856--37858920	32	2.0	32	100	0	130	24	15	9	50	1.73
37864923--37864948	13	2.0	13	100	0	52	7	7	7	76	1.15
37865133--37865182	21	2.4	21	83	12	59	30	8	0	62	1.24
37875324--37875366	20	2.2	20	86	0	59	48	0	6	44	1.29
37875831--37875859	14	2.0	15	93	6	51	0	0	10	89	0.48
37876073--37876115	22	2.0	22	81	9	52	6	44	0	48	1.29
37879365--37879399	3	11.7	3	93	0	52	28	0	5	65	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37885690--37885905	108	2.0	108	95	1	389	41	24	4	29	1.75
37896476--37896522	24	2.0	24	83	8	60	63	10	2	23	1.37
37896554--37896623	27	2.6	27	88	0	104	27	11	24	37	1.89
37896554--37896627	9	8.2	9	82	5	87	28	10	22	37	1.88
37903892--37903924	17	1.9	17	93	0	57	45	0	3	51	1.16
37907845--37907877	17	1.9	17	93	0	57	45	0	3	51	1.16
37910211--37910296	24	3.7	24	76	6	95	34	15	20	29	1.93
37910188--37910307	46	2.6	47	86	2	161	36	13	20	30	1.90
37910232--37910307	24	3.3	22	76	5	71	38	11	19	30	1.88
37911131--37911260	43	3.0	43	80	14	160	30	28	20	20	1.98
37919338--37919380	21	2.0	21	86	0	59	55	18	11	13	1.68
37919345--37919499	21	7.4	21	76	0	112	47	13	21	17	1.82
37919369--37919499	42	3.1	42	87	0	172	45	12	23	17	1.83
37920974--37921056	25	3.3	25	76	3	69	36	19	22	21	1.95
37921051--37921188	72	1.9	73	82	4	172	31	23	26	18	1.98
37921082--37921214	25	5.4	25	75	8	105	30	24	26	18	1.98
37921167--37921222	26	2.2	26	90	6	87	39	21	21	17	1.93
37927790--37927846	23	2.5	23	79	0	60	61	3	8	26	1.42
37929409--37929538	44	3.0	43	82	8	147	30	20	16	33	1.94
37929535--37930672	88	13.2	88	74	10	634	30	24	14	29	1.95
37929940--37930275	134	2.6	126	83	6	372	30	24	15	28	1.96
37929525--37930672	44	26.6	43	75	11	561	31	24	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37930083--37930653	82	6.8	83	72	13	436	31	25	15	27	1.96
37929975--37930420	171	2.6	171	88	2	619	30	24	15	29	1.96
37930189--37930779	126	4.7	123	89	6	729	30	26	15	27	1.96
37929887--37930572	297	2.3	301	85	3	916	30	25	15	28	1.96
37930190--37930698	252	2.0	253	93	0	867	30	26	15	27	1.96
37936954--37937010	23	2.5	23	79	0	60	61	3	8	26	1.42
37940270--37940385	25	4.7	25	72	3	92	31	20	25	21	1.98
37940460--37940517	26	2.2	26	80	14	66	43	18	17	20	1.89
37949554--37949614	32	1.9	32	86	6	88	36	16	16	31	1.91
37949764--37949816	16	3.2	16	81	2	61	39	16	7	35	1.78
37952920--37952991	30	2.4	30	100	0	144	13	11	26	48	1.76
37952920--37953009	30	3.0	29	88	6	92	13	16	23	46	1.82
37956167--37956203	16	2.3	16	100	0	74	27	10	29	32	1.90
37957142--37957182	21	2.0	21	85	9	57	21	7	9	60	1.52
37959017--37959176	47	3.4	47	90	0	257	35	21	13	29	1.92
37959222--37959260	20	2.0	20	89	0	60	38	15	0	46	1.46
37962290--37963111	30	27.4	30	100	0	1644	13	13	26	46	1.79
37966287--37966323	16	2.3	16	100	0	74	27	10	29	32	1.90
37967262--37967302	21	2.0	21	85	9	57	21	7	9	60	1.52
37969137--37969296	47	3.4	47	90	0	257	35	21	13	29	1.92
37969342--37969380	20	2.0	20	89	0	60	38	15	0	46	1.46
37970487--37970761	135	2.0	135	97	0	523	44	8	28	19	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37971204--37971259	28	2.0	28	96	0	103	41	14	23	21	1.89
37979063--37979130	30	2.3	30	84	5	84	30	16	5	47	1.70
37985263--37985305	21	2.0	21	95	0	77	13	30	20	34	1.92
37987679--37987713	16	2.2	16	90	10	54	51	2	17	28	1.59
37990809--37991128	75	4.2	76	88	2	398	34	19	23	23	1.97
37990820--37990943	35	3.4	35	66	18	99	33	24	22	20	1.97
37990878--37991073	40	5.2	40	67	17	148	35	18	21	23	1.96
37992801--37992835	17	2.0	18	88	5	54	37	0	8	54	1.31
37999690--37999735	15	3.1	15	81	9	51	47	2	6	43	1.41
38005929--38005974	15	3.1	15	81	9	51	47	2	6	43	1.41
38009504--38009566	33	1.9	33	96	0	117	22	26	15	34	1.94
38014211--38014243	3	11.0	3	100	0	66	66	0	0	33	0.92
38016934--38016983	21	2.4	21	82	0	64	22	28	32	18	1.97
38018407--38018439	14	2.2	16	89	10	52	45	36	0	18	1.49
38019673--38019783	54	2.1	54	94	0	195	41	17	21	19	1.90
38020803--38021113	66	4.7	66	87	2	437	28	18	24	28	1.98
38022177--38022243	31	2.1	32	91	2	109	40	22	8	28	1.84
38022913--38022985	25	2.9	25	87	0	92	38	16	13	31	1.88
38030502--38030568	32	2.0	32	91	5	107	47	11	26	13	1.77
38034402--38034432	1	31.0	1	100	0	62	0	0	0	100	0.00
38040994--38041132	61	2.3	61	81	2	172	28	12	9	49	1.72
38041583--38041657	31	2.4	30	80	10	89	48	12	14	25	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38042691--38042747	23	2.5	23	75	16	64	50	0	3	45	1.18
38045068--38045124	23	2.5	23	75	16	64	50	0	3	45	1.18
38049696--38049735	2	20.0	2	94	0	71	47	0	0	52	1.00
38054056--38054114	26	2.3	26	93	0	100	23	15	25	35	1.94
38064571--38064615	23	2.0	23	86	4	65	46	17	2	33	1.61
38064597--38064649	19	3.0	17	73	10	52	33	20	9	35	1.85
38064568--38064625	22	2.6	22	84	7	73	43	18	1	36	1.61
38085710--38085785	12	6.8	11	72	19	52	40	1	2	55	1.22
38087017--38087077	26	2.5	26	80	15	76	24	24	19	31	1.98
38105390--38105509	35	3.3	35	74	13	116	33	18	20	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163