genome.fa.s4.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  38  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12435602--12436671	468	2.3	468	85	3	1451	31	19	20	29	1.96
12438069--12438108	19	2.0	20	85	14	55	22	12	2	62	1.42
12441473--12441498	7	3.7	7	100	0	52	38	15	15	30	1.88
12446155--12446251	30	3.2	30	86	0	131	28	24	23	22	1.99
12449116--12449336	111	2.0	112	84	6	297	29	19	19	31	1.97
12450062--12450110	18	2.7	17	84	6	62	40	18	0	40	1.50
12452711--12453018	90	3.4	90	86	0	438	26	7	14	51	1.69
12453283--12453409	63	2.0	65	87	6	188	36	15	20	27	1.93
12453955--12454010	20	2.6	22	77	8	71	32	3	0	64	1.11
12454138--12454202	23	2.9	23	86	13	84	56	1	0	41	1.08
12454767--12454803	18	2.2	17	86	13	51	48	0	0	51	1.00
12455205--12455237	16	2.1	16	100	0	66	48	6	0	45	1.27
12457881--12457913	18	1.9	18	88	11	52	39	0	0	60	0.97
12458482--12458525	22	2.0	22	86	0	61	15	22	25	36	1.94
12458567--12458597	15	2.1	15	100	0	62	32	38	22	6	1.80
12458624--12458766	43	3.3	43	85	6	184	33	21	21	23	1.97
12458605--12458791	86	2.2	86	81	7	211	29	21	22	25	1.99
12458624--12458790	43	3.9	40	83	9	165	30	21	22	25	1.99
12459239--12459283	21	2.1	21	83	0	54	2	42	24	31	1.67
12462612--12462858	115	2.1	117	81	3	284	36	19	17	26	1.94
12463602--12463655	25	2.2	25	96	0	99	46	20	9	24	1.79
12464347--12464476	41	3.2	42	81	10	128	34	25	20	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12464363--12464498	41	3.3	41	85	4	159	32	25	22	20	1.98
12464381--12464517	41	3.3	41	84	4	116	36	24	21	17	1.94
12464781--12464824	3	14.3	3	95	4	79	0	34	0	65	0.93
12469187--12469215	14	2.0	15	93	6	51	20	20	20	37	1.94
12471618--12471646	14	2.0	15	93	6	51	20	20	20	37	1.94
12477221--12477284	20	3.4	19	75	14	62	48	0	39	12	1.41
12477622--12478115	242	2.0	243	99	0	981	37	10	10	41	1.73
12480138--12480186	11	4.4	11	97	2	89	40	2	0	57	1.10
12480168--12480227	22	2.7	22	80	12	61	40	1	3	55	1.27
12482823--12482939	58	2.0	58	93	0	198	57	1	17	23	1.49
12485058--12485119	25	2.5	24	81	2	79	33	24	19	22	1.97
12486477--12486506	6	5.0	6	91	0	51	63	3	0	33	1.11
12486958--12486990	17	1.9	17	93	0	57	39	15	12	33	1.84
12489458--12489483	5	5.2	5	100	0	52	42	19	19	19	1.90
12490315--12490351	9	4.1	9	92	0	56	27	10	16	45	1.80
12490405--12490435	9	3.4	9	90	0	53	38	22	12	25	1.90
12491762--12491790	15	1.9	15	100	0	58	41	6	6	44	1.58
12492690--12492720	9	3.4	9	90	0	53	38	22	12	25	1.90
12494723--12495024	107	2.7	112	82	8	336	31	23	13	30	1.93
12496155--12496210	8	7.2	8	95	4	98	75	0	0	25	0.81
12496142--12496211	22	3.3	20	81	14	79	74	1	0	24	0.90
12496129--12496217	27	3.5	25	79	15	94	75	1	1	22	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12496132--12496229	38	2.6	36	77	20	110	75	1	2	21	0.96
12501061--12501106	20	2.3	20	80	0	56	50	0	0	50	1.00
12502075--12502104	6	5.0	6	100	0	60	33	0	0	66	0.92
12507809--12507843	17	2.1	17	100	0	70	17	5	20	57	1.60
12525603--12525644	18	2.3	18	80	8	50	33	2	42	21	1.66
12526538--12526580	13	3.1	14	84	12	54	60	0	0	39	0.97
12526917--12526941	11	2.3	11	100	0	50	60	12	0	28	1.32
12528911--12528950	20	2.0	20	85	5	53	57	2	5	35	1.34
12533743--12535204	731	2.0	731	100	0	2924	34	19	17	27	1.95
12536994--12537107	25	4.6	25	77	6	97	31	19	25	23	1.98
12544681--12544779	6	15.8	6	71	6	72	7	18	2	72	1.17
12544750--12544779	10	3.1	10	90	9	53	0	16	0	83	0.65
12545758--12545813	13	4.7	11	82	12	67	14	3	7	75	1.16
12545758--12545813	24	2.3	24	87	6	78	14	3	7	75	1.16
12545772--12545813	13	3.4	13	93	6	70	14	0	7	78	0.95
12554111--12554169	26	2.3	26	93	0	100	37	15	11	35	1.84
12563926--12563958	6	5.5	6	92	0	57	33	18	33	15	1.92
12563924--12563965	18	2.3	18	83	0	57	35	19	30	14	1.91
12565307--12565356	25	2.0	25	84	7	66	38	6	26	30	1.80
12566871--12566896	2	13.0	2	100	0	52	50	50	0	0	1.00
12570633--12570691	28	2.1	28	81	9	66	50	11	1	35	1.49
12575272--12575301	3	10.0	3	100	0	60	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12575361--12575399	19	2.0	21	90	10	64	61	7	5	25	1.44
12577599--12577729	66	2.0	66	93	1	228	53	13	13	19	1.73
12579326--12579370	16	2.9	16	81	15	58	26	20	6	46	1.75
12582120--12582144	12	2.1	12	100	0	50	44	16	16	24	1.86
12589191--12589234	18	2.3	19	84	11	54	59	4	0	36	1.18
12595321--12595366	21	2.1	22	88	4	67	56	2	2	39	1.24
12596852--12597236	44	8.8	44	74	9	274	27	23	20	29	1.99
12596777--12597321	216	2.5	216	88	0	804	27	22	20	29	1.98
12609356--12609392	20	1.9	18	89	10	56	70	5	8	16	1.30
12609604--12609643	18	2.3	17	91	4	62	57	2	2	37	1.26
12611941--12612122	43	4.2	43	77	8	197	31	23	17	27	1.97
12614876--12615116	124	1.9	125	89	2	378	37	15	14	31	1.88
12615397--12615465	28	2.4	29	85	2	86	46	36	1	15	1.56
12615420--12615468	15	3.3	15	72	16	57	44	38	2	14	1.56
12615559--12615613	21	2.6	21	80	11	67	36	38	0	25	1.56
12615661--12615886	7	31.7	7	67	15	70	42	35	0	21	1.57
12615663--12615782	21	5.7	20	69	18	82	36	40	0	23	1.55
12615653--12615829	85	2.1	85	81	5	205	41	34	0	23	1.59
12615704--12615858	50	3.1	49	75	8	143	43	34	0	21	1.58
12615690--12615871	57	3.2	57	74	11	185	42	35	0	21	1.57
12615853--12615886	15	2.3	15	95	5	61	47	32	0	20	1.51
12617685--12617760	33	2.3	33	97	0	143	25	5	21	48	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12618065--12618100	18	1.9	18	88	5	54	58	2	0	38	1.13
12624429--12624656	127	1.8	124	83	6	298	28	36	0	34	1.58
12635396--12635455	28	2.1	28	87	6	86	23	20	15	41	1.89
12635922--12635985	19	3.1	21	75	20	71	46	23	14	15	1.82
12635930--12636043	22	5.3	21	75	18	85	44	22	16	15	1.86
12641853--12641877	2	12.5	2	100	0	50	52	0	48	0	1.00
12642489--12642593	41	2.5	42	87	6	151	31	33	20	15	1.93
12646591--12646701	54	2.1	54	91	0	177	38	11	2	46	1.55
12651196--12651230	9	3.9	9	88	0	52	57	2	0	40	1.14
12657628--12657774	75	1.9	76	98	1	287	16	17	13	53	1.74
12657653--12657772	38	3.2	38	65	23	108	16	16	13	53	1.73
12658766--12658793	1	28.0	1	100	0	56	100	0	0	0	0.00
12661231--12661262	2	16.0	2	100	0	64	50	0	0	50	1.00
12662075--12662114	20	2.0	20	90	0	62	27	10	12	50	1.72
12662060--12662126	34	1.9	35	90	3	109	31	8	13	46	1.74
12662054--12662130	14	5.0	15	71	20	52	33	9	14	42	1.77
12662107--12662191	32	2.6	31	76	9	89	25	10	18	44	1.82
12665713--12665745	15	2.1	16	94	5	59	60	6	18	15	1.54
12668539--12668605	25	2.5	27	76	13	77	40	11	26	20	1.88
12672223--12672251	1	29.0	1	100	0	58	0	0	0	100	0.00
12685982--12686018	17	2.2	16	90	4	56	21	21	8	48	1.76
12686094--12686275	93	2.0	93	93	2	312	25	14	11	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12686270--12686315	19	2.6	17	87	12	74	60	10	0	28	1.30
12686276--12686314	19	2.1	19	100	0	78	58	10	0	30	1.31
12698885--12698936	24	2.2	24	86	6	70	42	0	0	57	0.98
12708119--12708167	25	2.0	25	88	8	73	38	16	20	24	1.92
12708316--12708439	64	1.9	64	83	3	160	37	22	16	22	1.93
12715389--12715414	3	8.7	3	100	0	52	30	0	0	69	0.89
12718236--12718405	81	2.1	81	96	0	313	21	21	14	41	1.89
12722200--12722236	9	4.1	9	92	0	65	29	10	13	45	1.77
12722290--12722320	9	3.4	9	90	0	53	38	22	12	25	1.90
12722924--12722957	16	2.2	16	89	5	52	76	17	2	2	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163