genome.fa.s4.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  140  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45864170--45864212	3	14.3	3	100	0	86	0	0	32	67	0.91
45869879--45869904	6	4.3	6	100	0	52	15	0	53	30	1.42
45878311--45878449	68	2.0	69	90	1	217	46	10	17	24	1.80
45880599--45880627	15	1.9	15	100	0	58	48	6	3	41	1.47
45883754--45883787	2	17.5	2	93	6	61	47	0	0	52	1.00
45887266--45887305	18	2.2	18	86	8	55	12	10	2	75	1.15
45900450--45900526	9	8.4	9	81	8	75	42	24	9	23	1.83
45900611--45900639	6	4.8	6	100	0	58	17	0	13	68	1.20
45907867--45907930	31	2.1	31	90	0	101	43	14	10	31	1.79
45908813--45908845	7	4.7	7	96	0	57	81	15	3	0	0.80
45915462--45915503	16	2.8	16	82	7	52	85	0	14	0	0.59
45920832--45920910	39	2.0	40	95	2	142	31	1	10	56	1.40
45921088--45921166	39	2.0	40	95	2	142	31	1	10	56	1.40
45920740--45921252	256	2.0	257	99	0	1019	32	3	12	51	1.58
45929532--45929627	46	2.1	47	96	2	176	31	13	27	28	1.94
45929983--45930013	12	2.6	12	89	0	53	16	6	32	45	1.72
45939749--45939801	23	2.4	21	79	14	61	62	0	0	37	0.96
45939752--45939799	16	2.8	16	79	14	51	66	0	0	33	0.92
45940596--45940657	29	2.2	28	91	2	97	43	3	8	45	1.49
45944038--45944071	12	2.7	13	90	9	61	61	0	0	38	0.96
45944052--45944104	27	2.0	27	89	7	83	49	3	3	43	1.38
45944154--45944214	29	2.1	28	81	3	68	24	14	19	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45955504--45955549	24	2.0	24	83	12	60	6	17	21	54	1.65
45956804--45956871	35	1.9	35	96	0	127	52	10	20	16	1.72
45957529--45957580	21	2.5	21	90	0	77	30	34	9	25	1.88
45964356--45964380	2	12.5	2	100	0	50	52	48	0	0	1.00
45972316--45972350	16	2.2	16	90	5	54	42	0	0	57	0.99
45972471--45972505	16	2.2	16	90	5	54	42	0	0	57	0.99
45972315--45973849	155	9.9	155	99	0	3052	47	4	3	44	1.39
45972626--45972660	16	2.2	16	90	5	54	42	0	0	57	0.99
45972781--45972815	16	2.2	16	90	5	54	42	0	0	57	0.99
45972936--45972970	16	2.2	16	90	5	54	42	0	0	57	0.99
45973091--45973125	16	2.2	16	90	5	54	42	0	0	57	0.99
45973246--45973280	16	2.2	16	90	5	54	42	0	0	57	0.99
45973401--45973435	16	2.2	16	90	5	54	42	0	0	57	0.99
45973556--45973590	16	2.2	16	90	5	54	42	0	0	57	0.99
45973711--45973745	16	2.2	16	90	5	54	42	0	0	57	0.99
45973889--45973998	45	2.6	43	81	8	129	31	28	5	34	1.80
45973979--45974030	16	3.2	16	94	0	86	34	36	0	28	1.58
45982977--45983023	24	2.0	24	91	0	76	63	6	2	27	1.30
45983169--45983294	40	3.2	39	75	15	116	40	5	7	46	1.54
45993847--45993911	21	3.1	21	82	12	89	58	1	0	40	1.07
45995341--45995373	6	5.5	6	100	0	66	54	15	0	30	1.41
46007500--46007895	200	2.0	200	100	0	792	24	28	25	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46007949--46007999	25	2.0	25	96	0	93	31	27	9	31	1.89
46011714--46011764	18	2.7	19	78	3	59	35	0	0	64	0.94
46011718--46011768	25	2.1	24	81	3	57	41	0	0	58	0.98
46012062--46012091	3	10.0	3	92	0	51	63	0	3	33	1.11
46013114--46013681	127	4.5	127	100	0	1136	42	9	5	42	1.61
46015872--46015924	21	2.5	21	72	22	56	28	0	7	64	1.21
46018270--46018322	21	2.5	21	72	22	56	28	0	7	64	1.21
46045363--46045423	26	2.4	25	81	13	70	34	3	3	59	1.30
46054512--46054720	92	2.3	91	86	5	278	45	3	3	46	1.39
46054648--46054695	26	1.9	25	84	16	64	45	0	2	52	1.12
46054870--46054911	15	2.7	16	82	14	52	45	0	2	52	1.13
46054861--46054902	15	2.9	15	82	10	52	47	0	0	52	1.00
46054846--46055084	79	3.1	75	63	16	189	46	2	3	47	1.34
46055014--46055048	18	2.0	17	88	5	52	45	0	0	54	0.99
46054845--46055161	157	2.0	157	95	1	573	47	4	3	44	1.38
46055209--46055301	45	2.1	44	87	2	132	33	26	6	33	1.82
46055282--46055351	16	4.4	16	85	7	88	32	34	0	32	1.58
46055530--46055744	115	1.9	114	82	2	270	30	6	12	51	1.64
46057741--46057771	15	2.1	15	94	5	55	61	0	0	38	0.96
46067750--46067802	24	2.2	24	82	0	61	56	9	3	30	1.49
46069593--46069619	3	9.0	3	100	0	54	0	33	0	66	0.92
46070206--46070288	25	3.3	25	98	1	157	14	12	22	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46070534--46070628	49	2.0	47	89	4	145	23	12	6	57	1.57
46079570--46079595	12	2.2	12	100	0	52	42	0	50	7	1.31
46091084--46091126	4	10.8	4	100	0	86	25	0	25	48	1.51
46099148--46099185	17	2.2	18	86	9	53	60	0	10	28	1.30
46099288--46099326	19	2.1	19	95	4	71	30	0	0	69	0.89
46102356--46102417	22	2.7	22	80	5	61	37	3	1	58	1.24
46110484--46110518	3	11.7	3	93	0	61	0	34	0	65	0.93
46111186--46111214	2	15.0	2	92	7	51	51	0	0	48	1.00
46112215--46112250	16	2.2	16	95	0	63	30	25	22	22	1.99
46117061--46117136	23	3.3	23	82	12	102	31	25	19	23	1.98
46120868--46120911	21	2.1	21	83	8	54	22	9	25	43	1.82
46123409--46123463	23	2.4	24	81	9	69	7	20	30	41	1.79
46127273--46127303	12	2.6	12	94	0	53	22	41	29	6	1.78
46128981--46129102	23	5.3	23	86	2	174	23	19	26	30	1.98
46131732--46131810	25	3.2	25	87	1	97	22	27	18	30	1.98
46132947--46132979	12	2.8	12	95	0	57	21	45	27	6	1.75
46134309--46134361	17	3.1	17	88	2	79	18	22	26	32	1.97
46135265--46135289	2	12.5	2	100	0	50	52	0	0	48	1.00
46135757--46135894	45	3.1	46	72	9	124	31	18	22	28	1.97
46136886--46136910	2	12.5	2	100	0	50	52	0	0	48	1.00
46138407--46138461	25	2.3	24	81	12	60	56	16	5	21	1.60
46142352--46142442	22	4.0	22	72	25	66	50	1	4	43	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46147942--46148032	22	4.0	22	72	25	66	50	1	4	43	1.29
46149680--46149735	31	1.9	29	82	13	71	35	7	3	53	1.46
46158610--46158676	11	6.4	11	72	20	54	35	2	0	61	1.12
46158619--46158731	31	3.4	30	69	26	93	35	2	0	61	1.10
46158641--46158731	31	3.0	30	86	3	128	35	2	0	62	1.07
46158609--46158706	40	2.4	40	96	3	178	35	3	0	61	1.12
46158609--46158725	40	2.9	39	91	5	164	34	2	0	63	1.08
46169015--46169106	10	9.0	10	69	20	57	54	3	2	40	1.29
46169060--46169099	21	1.9	21	85	10	55	45	2	0	52	1.14
46178381--46178471	42	2.2	42	85	0	128	23	27	24	25	2.00
46178446--46178584	29	4.8	29	95	0	242	17	32	33	16	1.93
46178880--46178910	14	2.2	14	94	0	53	48	12	0	38	1.42
46181122--46181301	43	4.3	43	79	2	186	32	23	15	29	1.95
46185216--46185929	355	2.0	354	96	0	1322	29	23	13	33	1.93
46192997--46193051	29	2.0	28	82	13	69	30	20	1	47	1.60
46195403--46195473	30	2.4	30	90	9	110	16	16	56	9	1.66
46195403--46195453	18	3.2	18	69	30	60	17	19	54	7	1.67
46195511--46195575	27	2.4	27	100	0	130	7	24	46	21	1.77
46201774--46202155	190	2.0	191	99	0	757	47	12	5	35	1.63
46209339--46209595	51	5.4	51	75	13	233	31	13	24	30	1.93
46209396--46209481	37	2.3	37	91	0	145	29	12	23	34	1.92
46209346--46209518	88	2.0	86	93	2	292	30	12	23	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46209571--46209596	7	3.7	7	100	0	52	42	11	30	15	1.82
46209334--46209593	138	1.9	138	86	1	367	31	13	24	30	1.93
46211231--46211365	41	3.3	40	83	11	175	28	22	27	22	1.99
46214279--46214347	24	2.8	24	76	10	77	39	18	23	18	1.93
46229862--46229901	20	2.0	20	90	0	62	45	12	10	32	1.75
46229849--46229914	34	1.9	35	90	3	107	43	13	9	33	1.76
46229884--46229923	14	2.9	14	84	0	53	42	17	7	32	1.77
46237575--46237706	27	4.9	27	70	7	79	34	15	24	25	1.95
46237688--46237767	27	3.0	27	86	0	106	31	12	31	25	1.92
46242177--46242211	1	35.0	1	100	0	70	0	0	0	100	0.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163