genome.fa.s4.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  30  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9414529--9414619	41	2.2	41	82	9	105	31	8	27	31	1.87
9416626--9416684	20	3.0	20	100	0	118	30	10	15	44	1.79
9418051--9418130	32	2.5	32	81	4	90	52	17	2	27	1.57
9421625--9421658	15	2.3	15	100	0	68	47	20	11	20	1.81
9428659--9428748	42	2.1	42	87	0	126	26	30	26	16	1.97
9446455--9446613	79	2.0	80	98	1	311	45	6	15	32	1.71
9459843--9459899	30	1.9	30	85	0	78	22	29	29	17	1.97
9463279--9463318	19	2.1	19	85	0	53	30	7	10	52	1.62
9467564--9467599	15	2.4	15	90	0	54	41	5	38	13	1.68
9471100--9471132	2	17.0	2	93	6	59	48	0	0	51	1.00
9471306--9471337	2	17.0	2	87	12	50	50	0	0	50	1.00
9471093--9471505	205	2.0	206	99	0	819	37	15	13	33	1.87
9472408--9472446	16	2.4	16	82	0	51	74	7	15	2	1.15
9477524--9477562	16	2.4	16	82	0	51	74	7	15	2	1.15
9487952--9488029	30	2.6	30	95	0	138	42	8	26	21	1.83
9488015--9488119	30	3.5	29	85	7	131	32	10	29	27	1.90
9487955--9488164	60	3.5	60	71	7	167	36	12	27	23	1.91
9494545--9494575	16	1.9	16	93	0	53	48	3	0	48	1.17
9504252--9504409	23	6.9	23	73	0	109	42	22	13	21	1.88
9504267--9504354	46	1.9	46	85	0	122	45	25	10	19	1.81
9504327--9504431	46	2.3	46	80	3	113	41	18	12	27	1.86
9519946--9519977	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9520153--9520185	17	1.9	17	88	11	50	54	0	3	42	1.15
9523979--9524164	90	2.1	90	85	0	246	29	19	13	37	1.90
9527289--9527341	26	2.1	25	82	10	63	18	0	20	60	1.36
9530670--9530737	30	2.3	30	82	5	84	39	10	11	38	1.76
9535108--9535133	3	8.7	3	100	0	52	69	30	0	0	0.89
9535749--9535805	30	1.9	30	89	7	89	24	5	10	59	1.51
9544030--9544072	22	2.0	22	81	9	52	27	11	4	55	1.55
9545578--9545627	20	2.6	19	75	15	57	48	10	24	18	1.78
9545683--9545761	40	2.0	40	89	0	122	36	15	22	25	1.93
9545704--9545768	20	3.2	20	71	0	58	33	20	24	21	1.97
9548210--9548343	68	2.0	68	83	2	171	45	5	4	44	1.46
9551232--9551365	68	2.0	68	83	2	171	45	5	4	44	1.46
9551768--9551806	17	2.3	17	100	0	78	53	0	5	41	1.23
9553350--9553401	26	2.0	26	100	0	104	30	34	15	19	1.93
9553888--9554028	63	2.3	63	79	6	162	30	30	19	19	1.96
9553888--9554051	62	2.6	63	78	4	181	26	30	20	21	1.98
9565441--9565474	17	2.1	17	88	5	52	44	5	0	50	1.26
9568206--9568239	15	2.4	14	90	5	50	20	0	2	76	0.92
9568968--9569004	19	1.9	19	88	0	56	40	2	10	45	1.53
9584079--9584244	51	3.3	51	80	3	226	30	13	27	28	1.94
9584062--9584250	102	1.9	102	95	0	342	29	13	26	30	1.94
9584594--9584666	37	1.9	38	83	2	94	43	2	21	31	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9592591--9592772	63	2.9	63	84	0	211	25	7	30	36	1.84
9592623--9592864	63	3.9	63	81	2	211	26	5	30	36	1.80
9592749--9592892	63	2.3	63	84	1	182	28	6	31	33	1.82
9594282--9594312	9	3.4	9	100	0	62	22	12	22	41	1.88
9594368--9594401	9	3.8	9	96	0	59	44	17	11	26	1.83
9595270--9595295	5	5.2	5	100	0	52	23	19	19	38	1.93
9595879--9595972	14	6.7	14	70	0	71	54	6	19	20	1.65
9595872--9595956	28	3.0	28	79	6	91	52	5	20	21	1.66
9595908--9595972	28	2.3	28	94	0	112	55	7	20	16	1.65
9599403--9599433	6	5.0	6	96	4	53	83	0	0	16	0.64
9599634--9599673	3	13.3	3	84	10	55	67	0	0	32	0.91
9599634--9599678	15	3.0	15	83	9	56	68	2	0	28	1.01
9600115--9600166	21	2.6	21	90	6	81	38	15	11	34	1.83
9600599--9600723	44	2.8	44	91	2	189	28	25	17	28	1.98
9600723--9601312	88	6.7	88	86	3	792	19	22	28	29	1.98
9600723--9601311	177	3.3	179	86	4	847	19	22	28	29	1.98
9600734--9601312	265	2.2	265	88	1	865	19	22	27	29	1.98
9602534--9602590	27	2.1	27	80	6	62	1	14	8	75	1.11
9608363--9608402	3	13.3	3	84	10	55	67	0	0	32	0.91
9608363--9608407	15	3.0	15	83	9	56	68	2	0	28	1.01
9608818--9608895	21	3.7	22	75	17	76	38	16	10	34	1.83
9608808--9608864	22	2.6	22	81	8	62	42	17	7	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9611914--9611973	29	2.1	29	81	6	68	30	6	15	48	1.70
9618473--9618518	20	2.3	20	92	0	74	28	4	15	52	1.61
9621235--9621276	18	2.3	18	88	8	59	38	47	4	9	1.57
9622965--9623010	20	2.3	20	85	7	58	28	6	13	52	1.65
9626285--9626310	11	2.4	11	100	0	52	38	7	0	53	1.30
9626317--9626351	18	2.0	18	88	5	54	34	0	0	65	0.93
9629060--9629223	86	1.9	85	82	6	206	30	26	18	24	1.98
9629059--9629233	43	4.0	43	78	10	162	32	26	17	24	1.97
9630221--9630247	13	2.1	13	100	0	54	48	22	0	29	1.51
9636513--9636557	4	11.2	4	100	0	90	24	0	24	51	1.49
9644324--9644382	21	2.8	21	76	0	73	30	13	23	32	1.93
9646992--9647050	21	2.8	21	76	0	73	30	13	22	33	1.92
9649931--9650122	42	4.6	42	82	5	201	47	16	18	17	1.83
9649926--9650121	21	9.4	21	68	7	121	46	16	18	17	1.84
9649931--9650121	83	2.3	83	84	2	240	47	16	18	17	1.83
9651557--9652012	232	2.0	232	89	1	700	35	18	17	28	1.94
9657855--9657916	19	3.1	21	88	8	87	41	9	12	35	1.76
9657901--9657946	23	2.1	23	88	8	69	39	4	13	43	1.63
9658136--9658180	23	2.0	23	81	0	54	22	0	15	62	1.33
9658588--9658614	3	9.0	3	100	0	54	33	0	0	66	0.92
9665127--9666391	632	2.0	632	99	0	2521	23	23	20	33	1.97
9686707--9686869	76	2.1	76	96	1	308	34	20	6	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9687328--9687360	16	2.1	16	94	0	57	36	6	33	24	1.80
9691669--9691712	23	2.0	22	82	13	54	31	20	4	43	1.72
9691786--9691872	37	2.3	37	83	13	108	32	21	1	44	1.60
9691942--9692034	45	2.1	44	89	2	141	30	23	19	26	1.98
9692029--9692221	51	3.9	48	79	8	181	28	27	19	24	1.99
9692036--9692223	100	1.9	101	84	4	245	29	28	19	22	1.98
9694467--9694517	17	2.7	19	79	17	61	25	15	17	41	1.89
9695268--9695311	19	2.5	19	85	10	58	65	9	2	22	1.32
9700044--9700078	18	2.0	17	88	5	52	45	0	0	54	0.99
9700308--9700377	16	4.4	16	96	0	113	25	35	2	35	1.71
9715958--9715998	13	3.4	13	77	19	52	48	12	0	39	1.41
9715958--9716009	23	2.3	23	89	0	77	51	11	0	36	1.38
9723121--9723183	26	2.4	26	82	10	67	71	3	4	20	1.18
9724045--9724087	13	3.5	13	75	18	56	51	11	0	37	1.39
9724046--9724090	23	2.0	23	100	0	90	51	8	0	40	1.33
9727300--9727333	12	2.7	13	81	9	52	44	2	0	52	1.16
9734759--9734846	40	2.2	41	81	4	106	27	4	10	57	1.51
9734893--9734958	34	1.9	34	93	0	114	18	9	9	63	1.49
9738398--9738437	20	2.0	21	90	5	64	37	0	0	62	0.95
9740242--9740993	375	2.0	376	99	0	1497	40	13	12	33	1.83
9741801--9741841	3	13.7	3	100	0	82	31	0	0	68	0.90
9750724--9750863	68	2.1	68	80	2	156	24	25	20	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9750818--9750885	22	3.0	22	66	19	59	27	20	19	32	1.97
9750768--9750902	23	6.0	23	66	16	75	23	22	20	32	1.98
9750779--9750921	45	3.2	45	85	1	207	21	20	23	34	1.97
9755173--9755316	42	3.4	42	86	0	198	27	15	25	31	1.96
9755180--9755338	84	1.9	84	82	6	189	27	16	24	32	1.96
9757969--9758068	20	5.1	20	77	2	112	8	26	23	43	1.81
9757969--9758068	40	2.5	39	85	1	128	8	26	23	43	1.81
9762305--9762340	18	1.9	19	88	5	56	66	5	0	27	1.13
9764509--9764613	45	2.4	44	78	15	103	26	22	7	42	1.80
9775497--9775540	22	2.0	23	86	13	65	13	4	13	68	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163