genome.fa.s4.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  71  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23404870--23404933	27	2.4	27	97	0	119	40	10	0	48	1.38
23404983--23405061	27	2.9	27	88	0	104	30	22	30	16	1.96
23405105--23405164	4	15.0	4	76	13	52	68	0	30	1	0.99
23405105--23405248	13	10.3	13	66	22	53	67	0	30	2	1.02
23405181--23405270	17	5.8	14	70	20	63	73	0	25	1	0.90
23405194--23405276	18	4.6	18	76	10	71	69	0	28	1	0.96
23405216--23405298	26	3.4	25	75	19	70	72	0	26	1	0.92
23405171--23405290	41	3.0	41	71	10	106	66	0	32	0	0.97
23405180--23405270	46	2.0	46	85	8	123	72	0	26	1	0.91
23405304--23405340	18	2.1	19	90	10	60	35	0	0	64	0.94
23405815--23405870	27	2.1	27	93	0	94	44	14	32	8	1.76
23406326--23406381	27	2.1	27	93	0	94	44	14	32	8	1.76
23405488--23406449	511	1.9	510	97	0	1816	45	10	14	29	1.77
23408608--23408634	11	2.5	11	100	0	54	37	7	14	40	1.74
23410880--23410914	18	1.9	18	100	0	70	11	45	5	37	1.64
23410881--23410922	18	2.3	18	91	0	66	16	50	2	30	1.58
23416221--23416259	19	2.0	21	85	10	55	69	12	0	17	1.19
23416333--23416387	3	18.3	3	96	0	101	0	30	0	69	0.89
23416435--23416509	27	2.8	27	81	0	96	18	32	25	24	1.97
23416559--23416648	28	3.3	28	96	3	166	51	0	10	38	1.36
23417695--23418120	101	4.1	101	84	9	535	55	15	0	28	1.43
23417695--23418120	206	2.1	201	85	10	569	55	15	0	28	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23418097--23418260	72	2.3	72	96	1	303	53	15	0	29	1.47
23418146--23418266	41	3.2	41	62	22	100	56	14	0	28	1.39
23418097--23418203	34	3.1	33	65	17	81	52	17	0	28	1.51
23418127--23418241	38	3.1	38	67	14	114	54	12	0	32	1.43
23418521--23418556	3	12.3	3	94	5	65	0	30	0	69	0.89
23418739--23418822	27	3.1	27	91	0	123	17	34	29	17	1.94
23419110--23419145	6	6.0	6	96	0	63	16	13	0	69	1.19
23419552--23419577	6	4.3	6	100	0	52	84	0	15	0	0.62
23421124--23421162	20	2.0	19	95	5	69	25	0	23	51	1.49
23429159--23429446	144	2.0	145	95	1	515	36	13	17	32	1.89
23431316--23431423	53	2.0	53	98	0	207	31	18	15	34	1.92
23434372--23434594	84	2.7	83	78	12	242	46	10	9	33	1.72
23434433--23434599	84	2.0	86	88	7	252	47	10	8	34	1.68
23434580--23434772	85	2.2	84	87	5	251	41	9	13	35	1.78
23434609--23434772	85	1.9	86	91	3	269	43	10	15	29	1.80
23434611--23434795	85	2.2	86	87	4	259	44	11	14	29	1.80
23435938--23435983	24	2.0	24	83	12	60	65	2	0	32	1.05
23436864--23436907	16	2.7	16	80	13	54	54	0	0	45	0.99
23438189--23439632	113	12.8	113	99	0	2861	26	21	23	29	1.99
23440951--23441015	32	2.0	33	96	3	123	12	18	13	55	1.69
23441928--23442015	36	2.4	36	92	1	140	48	18	1	31	1.55
23441928--23442014	9	9.6	9	81	2	102	49	17	1	32	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23446814--23446859	21	2.2	21	96	0	83	30	19	50	0	1.48
23447178--23447288	42	2.6	42	73	1	105	31	18	19	29	1.96
23447275--23447320	24	1.9	24	95	0	83	13	17	19	50	1.78
23447299--23447405	42	2.5	43	93	1	180	19	20	22	37	1.94
23450873--23450903	9	3.4	9	90	0	53	25	12	22	38	1.90
23450956--23450992	9	4.1	9	89	0	56	48	13	8	29	1.71
23451376--23451406	16	1.9	16	93	0	53	29	29	0	41	1.56
23453058--23453107	17	2.7	19	82	14	61	36	12	0	52	1.39
23463434--23463554	25	4.8	26	76	16	130	29	14	20	35	1.92
23463408--23463604	50	3.9	50	86	0	250	29	13	20	36	1.91
23467603--23467648	23	2.0	23	100	0	92	13	4	17	65	1.42
23472789--23472909	57	2.1	55	80	13	138	48	10	15	24	1.77
23488366--23488396	9	3.4	9	90	0	53	38	22	12	25	1.90
23497251--23497375	6	21.7	6	71	12	59	24	6	1	68	1.22
23498948--23498977	15	1.9	16	93	6	53	16	23	26	33	1.96
23499093--23499150	6	9.7	6	85	7	82	13	3	1	81	0.91
23499086--23499150	12	5.5	11	83	8	76	15	3	3	78	1.00
23499087--23499152	18	3.7	17	84	9	78	13	3	3	80	0.95
23502295--23502464	27	6.3	27	81	8	204	42	18	17	21	1.89
23502295--23502464	80	2.1	79	84	5	216	42	18	17	21	1.89
23509880--23509916	18	2.1	18	89	0	56	29	29	21	18	1.97
23526050--23526101	26	1.9	28	84	7	72	55	9	11	23	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23528969--23528993	11	2.3	11	100	0	50	52	0	24	24	1.48
23529094--23529128	11	3.0	12	91	8	63	57	0	0	42	0.99
23533541--23533590	24	2.2	22	82	13	57	36	22	4	38	1.73
23539943--23540070	44	3.0	42	88	4	193	28	32	17	21	1.96
23539929--23540068	42	3.3	42	86	7	192	29	33	17	20	1.95
23539927--23540068	44	3.3	43	85	5	189	30	33	16	19	1.95
23540442--23540481	21	1.9	21	89	0	62	2	45	15	37	1.59
23548929--23548998	9	8.0	9	76	9	56	37	0	15	47	1.46
23551893--23551981	41	2.2	41	83	2	108	21	23	17	37	1.94
23552025--23552136	41	2.7	41	81	2	127	17	27	14	40	1.89
23554020--23554046	6	4.5	6	100	0	54	0	70	0	29	0.88
23558382--23558433	20	2.7	19	85	5	77	55	5	0	38	1.24
23558381--23558443	20	3.3	19	80	6	74	57	4	0	38	1.20
23559815--23559850	2	18.0	2	100	0	72	50	0	0	50	1.00
23564268--23564318	22	2.4	22	80	12	61	35	9	0	54	1.33
23569036--23569099	32	2.0	32	100	0	128	50	18	12	18	1.78
23570907--23570934	13	2.2	13	100	0	56	28	0	21	50	1.49
23578303--23578327	13	1.9	13	100	0	50	32	4	24	40	1.73
23579599--23579718	37	3.2	37	68	17	102	36	5	20	38	1.74
23579940--23580042	41	2.5	42	87	6	140	29	21	23	26	1.99
23582174--23582210	19	1.9	19	94	0	65	40	45	8	5	1.56
23583370--23583412	16	2.6	16	81	3	59	44	0	2	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23584850--23584887	19	2.0	19	85	10	51	42	0	15	42	1.47
23586396--23586452	21	2.8	21	83	2	80	15	22	26	35	1.94
23586696--23586733	19	2.0	19	85	10	51	47	5	10	36	1.61
23591747--23591787	20	2.1	21	86	13	61	2	2	26	68	1.15
23593937--23593963	12	2.2	12	100	0	54	92	7	0	0	0.38
23601871--23601965	44	2.1	45	84	5	122	32	4	28	34	1.77
23602111--23602152	15	2.9	15	82	10	52	52	0	0	47	1.00
23602370--23602536	26	5.8	28	69	22	87	49	3	1	45	1.30
23602270--23602551	91	3.0	93	83	7	306	48	2	2	45	1.31
23602345--23602551	91	2.3	90	90	5	310	46	3	2	46	1.34
23602412--23602551	47	3.0	47	70	17	148	46	4	2	46	1.37
23602326--23602512	44	4.1	43	70	16	128	48	2	2	46	1.30
23607884--23607919	18	2.0	18	100	0	72	61	27	5	5	1.41
23608811--23608875	12	6.3	11	73	22	52	60	0	3	36	1.13
23608821--23608854	17	2.0	17	88	0	50	64	0	0	35	0.94
23608818--23608875	10	5.8	10	73	20	50	58	0	1	39	1.08
23611401--23611459	29	2.0	29	96	0	109	54	0	8	37	1.31
23630092--23630179	44	2.0	44	82	8	108	32	21	17	28	1.96
23630134--23630414	147	1.9	147	80	5	327	35	26	13	24	1.93
23630908--23630963	21	2.7	20	75	8	58	50	41	0	8	1.34
23630921--23630969	14	3.4	14	91	2	80	46	46	0	6	1.27
23630921--23630969	7	6.9	7	76	4	53	46	46	0	6	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23630921--23630975	29	1.9	28	92	3	92	49	41	1	7	1.41
23630921--23630976	14	3.9	15	88	2	71	50	41	1	7	1.40
23631792--23631827	18	2.0	18	89	10	56	69	5	0	25	1.10
23631796--23631835	18	2.2	19	86	4	55	70	5	0	25	1.08
23631987--23632474	114	4.3	114	76	9	318	27	22	18	31	1.97
23632504--23632617	40	2.9	40	79	8	117	15	19	24	40	1.90
23633415--23633460	20	2.3	20	96	0	83	19	28	19	32	1.96
23633415--23633468	20	2.7	20	83	11	74	22	27	18	31	1.97
23641066--23641126	31	2.0	31	90	0	95	44	14	11	29	1.81
23643056--23643292	53	4.5	52	81	7	273	16	21	20	41	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163