genome.fa.s4.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  102  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33003870--33003913	22	2.0	21	83	12	54	40	0	0	59	0.98
33007999--33008057	25	2.4	24	82	5	64	33	20	27	18	1.96
33016890--33016975	6	14.7	6	95	4	158	16	0	0	83	0.64
33018324--33018354	3	10.3	3	92	0	53	67	0	32	0	0.91
33018328--33018360	15	2.1	16	94	5	59	72	0	27	0	0.85
33022352--33022381	8	3.8	8	90	0	51	40	0	0	60	0.97
33022346--33022386	16	2.6	16	92	0	73	39	0	0	60	0.96
33023265--33023399	25	5.6	24	81	10	118	17	24	20	38	1.93
33023303--33023393	22	4.0	22	82	4	92	15	24	20	39	1.91
33029463--33029488	11	2.4	11	100	0	52	50	7	42	0	1.31
33029662--33029693	12	2.6	13	85	14	50	34	0	25	40	1.56
33033316--33033403	17	5.1	16	75	10	68	17	17	29	36	1.92
33033350--33033398	18	2.7	18	84	6	64	14	14	30	40	1.85
33033774--33033810	3	12.3	3	100	0	74	32	0	0	67	0.91
33038517--33038546	11	2.7	11	89	0	51	56	6	10	26	1.57
33041776--33041835	30	2.1	29	87	9	88	51	10	16	21	1.73
33049452--33049496	12	3.8	12	77	16	58	15	15	15	53	1.74
33049450--33049496	23	2.0	24	91	4	78	17	14	17	51	1.77
33049631--33049655	4	6.2	4	100	0	50	24	0	24	52	1.48
33049694--33049761	23	2.9	23	82	2	82	29	11	17	41	1.85
33052202--33052239	20	1.9	20	88	0	58	31	5	15	47	1.68
33053218--33053287	33	2.1	33	84	10	90	35	1	1	61	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33053216--33053282	11	6.0	11	75	19	59	34	1	1	62	1.13
33053828--33053968	70	2.0	70	90	0	219	32	2	9	55	1.46
33058655--33058679	13	1.9	13	100	0	50	48	0	0	52	1.00
33059806--33059853	21	2.3	21	77	0	60	39	2	4	54	1.32
33060584--33060626	19	2.3	19	100	0	86	53	13	9	23	1.69
33061876--33061914	20	2.0	20	85	10	53	23	5	10	61	1.48
33062119--33062152	16	2.1	16	100	0	68	11	11	0	76	1.02
33062094--33062155	24	2.5	24	84	7	72	9	12	0	77	0.99
33063026--33063073	20	2.4	21	75	10	55	64	0	25	10	1.25
33066572--33066610	12	3.2	12	85	0	51	28	7	38	25	1.83
33067339--33067367	13	2.2	13	100	0	58	31	48	13	6	1.69
33070684--33070734	23	2.2	23	92	0	84	27	9	21	41	1.84
33080556--33080731	89	2.0	89	96	0	325	31	17	13	37	1.89
33080785--33080817	17	1.9	17	88	11	50	45	3	0	51	1.16
33085353--33085403	9	5.7	9	95	0	93	9	21	0	68	1.18
33092828--33093191	182	2.0	182	100	0	728	24	24	16	34	1.95
33101992--33102048	26	2.2	26	93	6	98	38	29	22	8	1.85
33103339--33103368	15	2.0	15	100	0	60	26	0	0	73	0.84
33109605--33109630	3	8.7	3	100	0	52	30	0	34	34	1.58
33115084--33115153	19	3.6	19	82	5	88	57	5	1	35	1.32
33115124--33115189	27	2.4	27	77	7	71	57	3	0	39	1.14
33115124--33115190	18	3.7	18	67	16	50	58	2	0	38	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33115083--33115201	20	6.2	20	74	9	79	57	5	0	36	1.27
33143405--33143446	18	2.6	16	79	17	50	35	0	2	61	1.09
33143405--33143445	17	2.4	18	84	11	52	34	0	2	63	1.08
33145643--33145723	21	3.9	21	69	6	65	41	16	25	16	1.88
33145637--33145739	42	2.5	42	87	3	145	42	17	24	15	1.88
33153963--33154011	18	2.7	19	75	12	50	67	0	6	26	1.14
33161329--33161744	204	2.0	205	94	1	726	18	32	13	35	1.90
33164455--33164513	30	2.0	30	93	0	100	52	13	5	28	1.61
33166871--33166914	19	2.2	20	84	11	56	52	13	0	34	1.41
33171920--33172807	88	9.8	88	86	10	1133	29	0	23	46	1.57
33172279--33172748	30	17.4	24	78	18	165	28	0	25	46	1.53
33172460--33172809	30	11.7	34	81	16	260	27	0	26	46	1.53
33171920--33172809	29	29.6	29	83	12	1052	29	0	24	46	1.57
33174008--33174039	14	2.3	14	94	0	55	59	15	0	25	1.36
33175129--33175171	11	3.9	11	93	0	68	44	0	30	25	1.55
33178325--33178356	15	2.1	15	100	0	64	31	25	6	37	1.81
33180463--33180538	36	2.1	36	80	11	84	51	1	7	39	1.39
33182182--33182222	19	2.1	20	86	4	57	63	7	0	29	1.21
33182397--33182429	9	3.7	9	91	0	57	39	12	18	30	1.87
33182397--33182431	18	1.9	18	100	0	70	40	11	17	31	1.85
33186976--33187176	5	40.2	5	100	0	402	19	19	19	40	1.92
33198198--33198327	41	3.2	40	79	10	136	28	15	25	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33206334--33206408	32	2.3	32	75	6	80	25	4	4	66	1.26
33206468--33206501	18	1.9	18	88	5	52	44	0	5	50	1.26
33208295--33208322	14	2.0	14	100	0	56	42	7	7	42	1.59
33208309--33208656	126	2.8	126	95	0	624	30	15	22	31	1.95
33211701--33211977	116	2.4	116	94	0	482	42	9	10	37	1.72
33211974--33212037	23	2.8	22	86	9	83	28	1	20	50	1.58
33212006--33212144	29	4.6	29	82	13	172	30	1	23	43	1.63
33212118--33212155	19	2.0	20	89	5	60	23	0	28	47	1.52
33212006--33212184	29	6.1	27	75	20	116	29	1	25	43	1.64
33212210--33212618	25	16.4	25	100	0	818	40	15	0	43	1.47
33213051--33213085	18	1.9	18	94	0	61	34	8	31	25	1.86
33213507--33213538	7	4.6	7	100	0	64	59	12	0	28	1.34
33216224--33217148	461	2.0	461	100	0	1850	34	11	16	38	1.84
33218163--33218197	3	11.7	3	93	0	61	28	71	0	0	0.86
33220223--33220455	116	2.0	117	99	0	459	46	7	6	40	1.56
33226457--33226490	3	11.3	3	100	0	68	0	32	0	67	0.91
33231573--33231624	22	2.4	22	78	15	54	48	1	5	44	1.38
33272675--33272700	2	13.0	2	100	0	52	50	0	0	50	1.00
33276539--33276584	23	2.0	23	82	4	56	54	6	4	34	1.46
33276754--33277118	185	2.0	185	100	0	730	32	9	16	40	1.82
33277323--33277355	14	2.3	15	89	5	50	39	15	0	45	1.46
33277512--33277546	18	1.9	18	94	0	61	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33282231--33282292	32	1.9	32	83	6	81	41	14	14	29	1.85
33286867--33286891	3	8.3	3	100	0	50	32	32	0	36	1.58
33287756--33287786	16	1.9	16	93	0	53	9	9	9	70	1.33
33290206--33290987	397	2.0	397	97	0	1465	42	16	9	30	1.80
33291137--33291386	41	6.1	41	100	0	500	34	24	17	24	1.96
33291365--33291408	22	2.0	22	90	0	70	38	25	11	25	1.89
33295477--33295532	17	3.1	17	73	14	58	39	0	5	55	1.23
33296786--33297439	335	2.0	334	93	2	1134	25	11	25	37	1.90
33302480--33302586	25	4.3	25	84	2	108	32	23	24	19	1.97
33302457--33302586	50	2.6	50	83	6	140	33	22	23	20	1.97
33302516--33302594	25	3.2	24	82	10	88	32	21	29	16	1.95
33309425--33309472	24	2.0	24	84	8	62	72	2	0	25	0.95
33309717--33309777	24	2.6	24	75	12	65	52	0	6	40	1.27
33312638--33312666	13	2.2	13	100	0	58	37	24	6	31	1.82
33313078--33313196	42	2.9	41	81	2	123	45	17	22	14	1.85
33313149--33313249	21	4.8	21	71	0	76	45	15	22	15	1.85
33313098--33313249	42	3.6	42	78	0	133	44	15	23	15	1.85
33313098--33313249	63	2.4	63	76	0	160	44	15	23	15	1.85
33321046--33321230	46	4.0	46	89	0	280	28	25	10	35	1.89
33336725--33337377	44	14.5	44	70	11	254	29	18	19	32	1.96
33336663--33336970	139	2.2	139	98	0	598	29	20	19	30	1.97
33337216--33337375	41	3.7	42	76	9	128	27	19	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33349003--33349086	39	2.1	40	86	2	125	34	15	23	26	1.95
33349015--33349099	39	2.2	39	80	6	100	37	15	21	25	1.92
33349133--33349413	41	6.9	41	92	0	438	17	18	34	29	1.94
33349719--33349753	15	2.4	14	86	9	52	22	0	37	40	1.55
33349769--33349803	8	4.5	8	89	7	54	14	0	48	37	1.44
33350050--33350084	15	2.4	14	86	9	52	22	0	37	40	1.55
33349532--33350159	331	1.9	330	98	0	1211	34	2	21	42	1.66
33350100--33350134	8	4.5	8	89	7	54	14	0	48	37	1.44
33352314--33352344	10	3.1	10	95	0	53	16	19	12	51	1.76
33353838--33353920	43	2.0	42	87	2	121	37	8	10	43	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163