genome.fa.s4.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  54  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17381773--17381814	17	2.5	17	92	0	66	52	23	4	19	1.65
17382319--17382394	23	3.3	22	80	7	89	32	23	18	25	1.97
17383432--17383553	60	2.0	60	85	3	165	22	26	16	34	1.95
17383492--17383662	40	4.3	40	84	4	193	19	26	17	36	1.94
17385498--17385570	25	2.9	24	76	13	67	23	26	19	31	1.98
17393088--17393255	73	2.3	73	86	2	239	20	25	18	35	1.95
17393307--17393443	25	5.5	24	72	13	82	21	24	18	36	1.95
17393307--17393443	50	2.7	50	78	8	138	21	24	18	36	1.95
17393398--17393458	25	2.5	24	79	12	61	24	22	21	31	1.98
17398892--17399011	27	4.5	27	71	5	82	33	23	26	16	1.96
17400939--17401091	51	3.4	43	69	20	132	22	17	29	30	1.97
17400980--17401056	26	3.0	27	77	9	88	15	22	33	28	1.94
17401075--17401157	33	2.5	33	94	0	139	18	15	28	37	1.91
17419979--17420081	54	1.9	54	83	0	134	26	26	28	19	1.99
17435320--17435354	18	2.0	17	88	5	52	34	20	14	31	1.92
17450534--17450570	15	2.5	15	100	0	74	24	29	16	29	1.96
17452014--17452190	49	3.6	49	83	1	203	26	15	19	38	1.91
17452014--17452190	97	1.8	98	82	1	230	26	15	19	38	1.91
17463740--17463776	14	2.6	14	86	0	56	29	8	27	35	1.85
17465456--17465498	18	2.2	20	84	15	56	20	20	11	46	1.82
17467249--17467304	14	3.8	15	86	11	80	33	0	46	19	1.50
17468251--17468821	286	2.0	286	97	0	1088	28	9	35	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17469687--17470167	27	17.9	26	78	11	404	42	21	18	17	1.89
17469687--17470167	54	9.0	53	80	7	449	42	21	18	17	1.89
17470329--17470383	26	2.1	26	89	0	83	20	20	25	34	1.96
17470500--17470617	28	4.3	28	88	2	168	22	22	22	33	1.98
17481918--17482579	320	2.1	307	85	4	858	37	21	12	29	1.90
17484410--17484554	54	2.7	54	89	4	195	20	27	25	26	1.99
17484410--17484591	54	3.4	54	87	4	190	19	26	25	27	1.99
17486847--17486889	21	2.0	21	100	0	86	27	13	30	27	1.95
17505735--17505797	18	3.5	18	73	0	63	44	17	7	30	1.77
17505737--17505815	36	2.2	36	86	4	106	44	18	7	29	1.78
17506540--17506804	133	2.0	133	96	0	494	42	21	7	28	1.79
17507626--17507669	23	2.0	21	83	16	54	40	6	0	52	1.28
17507599--17507669	31	2.3	31	83	13	85	40	5	0	53	1.24
17518578--17518648	16	4.6	16	72	10	58	38	0	0	61	0.96
17518591--17518646	6	9.5	6	76	16	55	33	0	0	66	0.92
17518605--17518650	24	2.0	23	86	4	65	34	0	0	65	0.93
17518776--17519403	86	7.3	87	76	9	398	33	12	10	43	1.77
17518776--17519445	85	7.8	86	78	7	535	33	12	10	43	1.77
17518966--17519485	255	2.0	254	89	1	810	33	12	11	42	1.79
17519068--17519497	85	5.1	85	76	10	357	33	12	11	42	1.78
17519461--17519572	59	1.9	59	83	3	145	29	11	10	48	1.73
17520173--17520197	13	1.9	13	100	0	50	32	0	28	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17524827--17524881	15	3.7	15	72	13	51	72	0	20	7	1.07
17524833--17524891	12	4.7	12	72	12	55	69	0	20	10	1.17
17533111--17533189	32	2.6	31	76	11	83	36	3	2	56	1.31
17534158--17534187	13	2.3	13	100	0	60	40	43	0	16	1.48
17534326--17534384	9	6.4	9	81	11	75	22	8	28	40	1.83
17535608--17535645	19	2.1	17	90	9	58	73	2	7	15	1.17
17537150--17537348	99	2.0	100	99	1	391	37	15	7	40	1.74
17543170--17543460	50	5.7	50	84	4	359	24	29	20	25	1.99
17547195--17547393	50	3.9	50	80	8	181	27	20	27	24	1.99
17547199--17547393	49	3.8	50	80	4	176	27	20	27	24	1.99
17551134--17551197	32	2.0	32	100	0	128	34	21	15	28	1.94
17561456--17561522	32	2.1	32	94	0	116	47	19	4	28	1.68
17562921--17562953	2	16.5	2	100	0	66	48	0	0	51	1.00
17563560--17563670	41	2.7	41	87	0	123	25	21	21	31	1.98
17563575--17563677	41	2.5	41	90	0	152	26	21	22	30	1.99
17564385--17564411	14	1.9	14	100	0	54	37	7	14	40	1.74
17573365--17573475	41	2.7	41	76	5	125	35	18	26	19	1.95
17576681--17576715	18	1.9	18	94	0	61	28	14	11	45	1.79
17579619--17579644	13	2.0	13	100	0	52	53	0	0	46	1.00
17584228--17584300	23	3.1	24	70	5	60	38	2	1	57	1.22
17589203--17589360	48	3.3	47	78	7	147	24	29	19	27	1.98
17589324--17589394	34	2.1	34	94	0	124	25	23	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17589907--17591002	548	2.0	548	99	0	2174	34	18	11	34	1.87
17593811--17593947	30	4.6	30	70	8	100	33	19	8	38	1.81
17594579--17594632	20	2.6	19	80	13	54	75	7	14	1	1.09
17594599--17594652	24	2.4	23	87	9	76	79	3	14	1	0.95
17594745--17594834	4	22.5	4	75	20	57	72	0	27	0	0.85
17594756--17594832	23	3.2	26	71	23	71	71	0	28	0	0.86
17594747--17594820	33	2.3	33	80	15	84	70	0	29	0	0.88
17594748--17594798	19	2.7	19	84	3	68	72	0	27	0	0.85
17594748--17594834	43	2.2	37	82	12	93	72	0	27	0	0.85
17594985--17595048	20	3.6	17	87	8	76	32	37	26	3	1.72
17594977--17595025	20	2.5	20	100	0	98	34	36	24	4	1.75
17595652--17595739	18	4.9	17	76	14	79	30	13	11	44	1.79
17595655--17595722	35	1.9	35	90	0	109	29	14	11	44	1.81
17606734--17606765	8	3.9	8	95	4	55	87	12	0	0	0.54
17606732--17606774	19	2.3	19	88	8	61	88	9	2	0	0.60
17607637--17608594	77	12.3	78	89	4	1352	28	17	20	34	1.95
17607655--17608594	236	4.0	237	91	2	1427	28	17	20	33	1.95
17607637--17608594	159	6.1	155	89	4	1355	28	17	20	34	1.95
17608943--17609043	30	3.4	30	78	6	98	32	16	3	46	1.66
17609034--17609103	29	2.4	29	85	4	88	32	18	8	40	1.81
17609720--17609758	16	2.4	17	95	4	71	76	5	12	5	1.11
17609715--17609783	21	3.5	20	74	23	58	78	4	14	2	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17609876--17609946	4	17.5	4	76	16	58	73	0	25	1	0.92
17609875--17609946	22	3.3	22	80	16	71	72	0	26	1	0.93
17610228--17610260	13	2.6	13	90	4	50	84	0	15	0	0.61
17610783--17610881	18	5.6	18	75	4	103	28	14	10	47	1.76
17610760--17610841	35	2.3	35	80	4	83	32	10	10	45	1.75
17610781--17610881	35	2.9	34	82	2	112	27	13	10	47	1.77
17613997--17615561	782	2.0	782	100	0	3130	38	13	10	37	1.80
17615442--17617050	809	2.0	800	97	1	3002	38	18	9	33	1.84
17620183--17620232	3	16.7	3	95	0	91	68	2	0	30	1.01
17620307--17621596	645	2.0	645	100	0	2580	46	15	8	30	1.76
17623127--17623302	44	4.0	44	100	0	352	38	27	11	22	1.88
17630873--17630908	2	18.0	2	100	0	72	50	0	50	0	1.00
17632370--17632446	30	2.6	29	80	12	84	57	0	1	41	1.07
17652195--17652243	21	2.3	22	75	3	55	34	8	0	57	1.29
17662673--17662721	21	2.3	22	75	3	55	34	8	0	57	1.29
17683460--17683518	25	2.4	24	80	11	57	38	3	1	55	1.26
17697015--17697154	32	4.4	32	76	6	133	38	20	20	21	1.94
17697156--17697206	26	2.0	26	88	0	75	37	29	21	11	1.89
17697197--17697259	27	2.4	26	80	15	76	34	22	23	19	1.96
17697474--17697568	27	3.6	26	80	4	109	26	20	16	36	1.93
17703890--17703932	21	2.0	21	100	0	86	41	4	4	48	1.44
17725928--17725977	26	1.9	26	84	8	66	20	28	6	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17733630--17733670	20	2.0	20	95	0	73	51	0	26	21	1.48
17739557--17739591	17	2.1	17	100	0	70	31	34	5	28	1.81
17742932--17742989	30	1.9	30	89	0	89	27	12	24	36	1.91
17759540--17759848	27	11.3	27	81	5	309	20	18	21	39	1.93
17759540--17759848	54	5.7	53	83	7	361	20	18	21	39	1.93
17762955--17763805	27	31.3	27	79	7	717	39	18	18	23	1.92
17763341--17763504	90	1.8	90	86	5	242	40	19	17	23	1.91
17763997--17764094	26	3.8	26	83	0	115	16	22	23	37	1.93
17764203--17764281	30	2.6	30	89	0	122	20	26	24	29	1.99
17771808--17771856	20	2.5	20	78	15	57	14	24	6	55	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163